Diff of the two buildlogs: -- --- b1/build.log 2021-07-17 11:31:57.001008012 +0000 +++ b2/build.log 2021-07-17 11:54:08.574901505 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Jul 16 23:18:29 -12 2021 -I: pbuilder-time-stamp: 1626520709 +I: Current time: Sat Aug 20 07:55:00 +14 2022 +I: pbuilder-time-stamp: 1660931700 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Jun 14 00:30:05 2018 -12 +gpgv: Signature made Fri Jun 15 02:30:05 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -34,136 +34,170 @@ dpkg-source: info: applying 0006-correct-copy-overflow.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/41603/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/18637/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/18637/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/18637/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='17f2d80d13b84f89a7fbb9bdce2a2af1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='41603' - PS1='# ' - PS2='> ' + INVOCATION_ID=83eaa5c6de92428680bf6bacfe815321 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=18637 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.OJXuGa0gcO/pbuilderrc_zM9P --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.OJXuGa0gcO/b1 --logfile b1/build.log relion_1.4+dfsg-4.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.OJXuGa0gcO/pbuilderrc_qqBT --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.OJXuGa0gcO/b2 --logfile b2/build.log relion_1.4+dfsg-4.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos11-amd64 4.19.0-17-amd64 #1 SMP Debian 4.19.194-2 (2021-06-21) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-0.bpo.7-amd64 #1 SMP Debian 5.10.40-1~bpo10+1 (2021-06-04) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 6 20:24 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/41603/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 20 07:55 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 10 04:47 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/18637/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -347,7 +381,7 @@ Get: 138 http://deb.debian.org/debian buster/main amd64 openmpi-common all 3.1.3-11 [165 kB] Get: 139 http://deb.debian.org/debian buster/main amd64 openmpi-bin amd64 3.1.3-11 [200 kB] Get: 140 http://deb.debian.org/debian buster/main amd64 libopenmpi-dev amd64 3.1.3-11 [974 kB] -Fetched 67.0 MB in 2s (41.4 MB/s) +Fetched 67.0 MB in 2s (40.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -935,7 +969,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/relion-1.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/relion-1.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package relion dpkg-buildpackage: info: source version 1.4+dfsg-4 dpkg-buildpackage: info: source distribution unstable @@ -1079,7 +1113,7 @@ config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode -make -j15; make install prefix=/build/relion-1.4+dfsg/debian/tmp/simple/usr +make -j16; make install prefix=/build/relion-1.4+dfsg/debian/tmp/simple/usr make[2]: Entering directory '/build/relion-1.4+dfsg' make all-am make[3]: Entering directory '/build/relion-1.4+dfsg' @@ -1098,146 +1132,146 @@ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/stack_create.o src/apps/stack_create.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/image_handler.o src/apps/image_handler.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/project.o src/apps/project.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp +src/args.cpp: In member function 'IOParser& IOParser::operator=(const IOParser&)': +src/args.cpp:104:1: warning: no return statement in function returning non-void [-Wreturn-type] + } + ^ +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c 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g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/reconstruct src/apps/reconstruct.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/preprocess src/apps/preprocess.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/postprocess src/apps/postprocess.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/autopick src/apps/autopick.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/project src/apps/project.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/preprocess src/apps/preprocess.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/refine src/apps/refine.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/autopick src/apps/autopick.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_polish src/apps/particle_polish.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/postprocess src/apps/postprocess.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/find_tiltpairs src/apps/find_tiltpairs.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_sort src/apps/particle_sort.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/mask_create src/apps/mask_create.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/star_compare src/apps/star_compare.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_polish src/apps/particle_polish.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/tiltpair_plot src/apps/tiltpair_plot.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/find_tiltpairs src/apps/find_tiltpairs.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run_ctffind src/apps/run_ctffind.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/stack_create src/apps/stack_create.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/image_handler src/apps/image_handler.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/mask_create src/apps/mask_create.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 make[3]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Entering directory '/build/relion-1.4+dfsg' make[3]: Entering directory '/build/relion-1.4+dfsg' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu' - /bin/bash ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu' + /bin/sh ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/librelion-1.4.so.1.0.4 /build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so.1 || { rm -f librelion-1.4.so.1 && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so.1; }; }) libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so || { rm -f librelion-1.4.so && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so; }; }) @@ -1290,55 +1324,55 @@ libtool: install: ranlib /build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin' - /bin/bash ./libtool --mode=install /usr/bin/install -c project '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_project' + /bin/sh ./libtool --mode=install /usr/bin/install -c project '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_project' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/project /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_project - /bin/bash ./libtool --mode=install /usr/bin/install -c reconstruct '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_reconstruct' + /bin/sh ./libtool --mode=install /usr/bin/install -c reconstruct '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_reconstruct' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/reconstruct /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_reconstruct - /bin/bash ./libtool --mode=install /usr/bin/install -c refine '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_refine' + /bin/sh ./libtool --mode=install /usr/bin/install -c refine '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_refine' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_refine - /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_preprocess' + /bin/sh ./libtool --mode=install /usr/bin/install -c preprocess '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_preprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_preprocess - /bin/bash ./libtool --mode=install /usr/bin/install -c postprocess '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_postprocess' + /bin/sh ./libtool --mode=install /usr/bin/install -c postprocess '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_postprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/postprocess /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_postprocess - /bin/bash ./libtool --mode=install /usr/bin/install -c autopick '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_autopick' + /bin/sh ./libtool --mode=install /usr/bin/install -c autopick '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_autopick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_autopick - /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_particle_polish' + /bin/sh ./libtool --mode=install /usr/bin/install -c particle_polish '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_particle_polish' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_particle_polish - /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_particle_sort' + /bin/sh ./libtool --mode=install /usr/bin/install -c particle_sort '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_particle_sort' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_particle_sort - /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_run_ctffind' + /bin/sh ./libtool --mode=install /usr/bin/install -c run_ctffind '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_run_ctffind' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_run_ctffind - /bin/bash ./libtool --mode=install /usr/bin/install -c star_compare '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_compare' + /bin/sh ./libtool --mode=install /usr/bin/install -c star_compare '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_compare' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/star_compare /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_compare - /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_find_tiltpairs' + /bin/sh ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_find_tiltpairs - /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_tiltpair_plot' + /bin/sh ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_tiltpair_plot - /bin/bash ./libtool --mode=install /usr/bin/install -c mask_create '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_mask_create' + /bin/sh ./libtool --mode=install /usr/bin/install -c mask_create '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_mask_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/mask_create /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_mask_create - /bin/bash ./libtool --mode=install /usr/bin/install -c stack_create '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_stack_create' + /bin/sh ./libtool --mode=install /usr/bin/install -c stack_create '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_stack_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/stack_create /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_stack_create - /bin/bash ./libtool --mode=install /usr/bin/install -c image_handler '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_image_handler' + /bin/sh ./libtool --mode=install /usr/bin/install -c image_handler '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_image_handler' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/image_handler /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_image_handler - /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_find_tiltpairs' + /bin/sh ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_find_tiltpairs - /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_tiltpair_plot' + /bin/sh ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_tiltpair_plot /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin' @@ -1485,39 +1519,43 @@ config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode -make -j15; make install prefix=/build/relion-1.4+dfsg/debian/tmp/mpi/usr +make -j16; make install prefix=/build/relion-1.4+dfsg/debian/tmp/mpi/usr make[2]: Entering directory '/build/relion-1.4+dfsg' make all-am make[3]: Entering directory '/build/relion-1.4+dfsg' mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/project.o src/apps/project.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner.lo src/ctffind_runner.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/fftw.lo src/fftw.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/filename.lo src/filename.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/funcs.lo src/funcs.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner.lo src/ctffind_runner.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/fftw.lo src/fftw.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/filename.lo src/filename.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/funcs.lo src/funcs.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -fPIC -DPIC -o src/.libs/filename.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o +libtool: 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-fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -fPIC -DPIC -o src/.libs/ctffind_runner_mpi.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -o src/transformations.o >/dev/null 2>&1 src/mpi.cpp: In constructor 'MpiNode::MpiNode(int&, char**)': src/mpi.cpp:56:57: warning: 'int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler)' is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set(MPI_COMM_WORLD, MPI_ERRORS_RETURN); @@ -1644,22 +1675,28 @@ /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1338:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. 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-fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 +mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine.o src/apps/refine.cpp +mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp src/preprocessing_mpi.cpp: In member function 'void PreprocessingMpi::runExtractParticles()': src/preprocessing_mpi.cpp:58:9: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system("mkdir -p Particles"); @@ -1667,18 +1704,15 @@ src/preprocessing_mpi.cpp:68:10: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system(("mkdir -p " + fn_dir).c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser_mpi.lo src/ml_optimiser_mpi.cpp -mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/reconstruct.o src/apps/reconstruct.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -fPIC -DPIC -o src/.libs/ml_optimiser_mpi.o -mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine.o src/apps/refine.cpp -mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -o src/preprocessing_mpi.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/postprocess.o src/apps/postprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick.o src/apps/autopick.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -o src/preprocessing_mpi.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -o src/particle_sorter_mpi.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -o src/preprocessing.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish.o src/apps/particle_polish.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort.o src/apps/particle_sort.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -o src/particle_polisher_mpi.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind.o src/apps/run_ctffind.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -o src/particle_polisher_mpi.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/star_compare.o src/apps/star_compare.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/find_tiltpairs.o src/apps/find_tiltpairs.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/tiltpair_plot.o src/apps/tiltpair_plot.cpp @@ -1691,10 +1725,10 @@ mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/mask_create.o src/apps/mask_create.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/stack_create.o src/apps/stack_create.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/image_handler.o src/apps/image_handler.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -o src/ml_optimiser_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -o src/metadata_label.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -o src/ml_optimiser_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -o src/ml_optimiser.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -Wl,-z,relro -Wl,-z,now -o librelion-1.4.la -rpath /usr/lib/x86_64-linux-gnu src/args.lo src/assembly.lo src/autopicker.lo src/backprojector.lo src/complex.lo src/ctf.lo src/ctffind_runner.lo src/error.lo src/euler.lo src/exp_model.lo src/fftw.lo src/filename.lo src/funcs.lo src/healpix_sampling.lo src/image.lo src/mask.lo src/matrix1d.lo src/matrix2d.lo src/memory.lo src/metadata_container.lo src/metadata_label.lo src/metadata_table.lo src/ml_model.lo src/ml_optimiser.lo src/multidim_array.lo src/numerical_recipes.lo src/parallel.lo src/particle_polisher.lo src/particle_sorter.lo src/postprocessing.lo src/preprocessing.lo src/projector.lo src/strings.lo src/symmetries.lo src/tabfuncs.lo src/time.lo src/transformations.lo src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/healpix_base.lo src/mpi.lo src/autopicker_mpi.lo src/ctffind_runner_mpi.lo src/particle_polisher_mpi.lo src/particle_sorter_mpi.lo src/preprocessing_mpi.lo src/ml_optimiser_mpi.lo -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -Wl,-z,relro -Wl,-z,now -o librelion-1.4.la -rpath /usr/lib/x86_64-linux-gnu src/args.lo src/assembly.lo src/autopicker.lo src/backprojector.lo src/complex.lo src/ctf.lo src/ctffind_runner.lo src/error.lo src/euler.lo src/exp_model.lo src/fftw.lo src/filename.lo src/funcs.lo src/healpix_sampling.lo src/image.lo src/mask.lo src/matrix1d.lo src/matrix2d.lo src/memory.lo src/metadata_container.lo src/metadata_label.lo src/metadata_table.lo src/ml_model.lo src/ml_optimiser.lo src/multidim_array.lo src/numerical_recipes.lo src/parallel.lo src/particle_polisher.lo src/particle_sorter.lo src/postprocessing.lo src/preprocessing.lo src/projector.lo src/strings.lo src/symmetries.lo src/tabfuncs.lo src/time.lo src/transformations.lo src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/healpix_base.lo src/mpi.lo src/autopicker_mpi.lo src/ctffind_runner_mpi.lo src/particle_polisher_mpi.lo src/particle_sorter_mpi.lo src/preprocessing_mpi.lo src/ml_optimiser_mpi.lo -lfftw3_threads -lfftw3 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o src/.libs/args.o src/.libs/assembly.o src/.libs/autopicker.o src/.libs/backprojector.o src/.libs/complex.o src/.libs/ctf.o src/.libs/ctffind_runner.o src/.libs/error.o src/.libs/euler.o src/.libs/exp_model.o src/.libs/fftw.o src/.libs/filename.o src/.libs/funcs.o src/.libs/healpix_sampling.o src/.libs/image.o src/.libs/mask.o src/.libs/matrix1d.o src/.libs/matrix2d.o src/.libs/memory.o src/.libs/metadata_container.o src/.libs/metadata_label.o src/.libs/metadata_table.o src/.libs/ml_model.o src/.libs/ml_optimiser.o src/.libs/multidim_array.o src/.libs/numerical_recipes.o src/.libs/parallel.o src/.libs/particle_polisher.o src/.libs/particle_sorter.o src/.libs/postprocessing.o src/.libs/preprocessing.o src/.libs/projector.o src/.libs/strings.o src/.libs/symmetries.o src/.libs/tabfuncs.o src/.libs/time.o src/.libs/transformations.o src/Healpix_2.15a/.libs/cxxutils.o src/Healpix_2.15a/.libs/healpix_base.o src/.libs/mpi.o src/.libs/autopicker_mpi.o src/.libs/ctffind_runner_mpi.o src/.libs/particle_polisher_mpi.o src/.libs/particle_sorter_mpi.o src/.libs/preprocessing_mpi.o src/.libs/ml_optimiser_mpi.o -lfftw3_threads -lfftw3 -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librelion-1.4.so.1 -o .libs/librelion-1.4.so.1.0.4 libtool: link: (cd ".libs" && rm -f "librelion-1.4.so.1" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so.1") libtool: link: (cd ".libs" && rm -f "librelion-1.4.so" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so") @@ -1702,46 +1736,46 @@ ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librelion-1.4.a libtool: link: ( cd ".libs" && rm -f "librelion-1.4.la" && ln -s "../librelion-1.4.la" "librelion-1.4.la" ) -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool 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librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong 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-lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o refine_mpi src/apps/refine_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o preprocess_mpi src/apps/preprocess_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o autopick_mpi src/apps/autopick_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_polish_mpi src/apps/particle_polish_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/refine src/apps/refine.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_polish src/apps/particle_polish.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/reconstruct src/apps/reconstruct.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/project src/apps/project.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/preprocess src/apps/preprocess.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/postprocess src/apps/postprocess.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/autopick src/apps/autopick.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/tiltpair_plot src/apps/tiltpair_plot.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_polish src/apps/particle_polish.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/preprocess_mpi src/apps/preprocess_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run_ctffind src/apps/run_ctffind.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/find_tiltpairs src/apps/find_tiltpairs.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_sort src/apps/particle_sort.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/tiltpair_plot src/apps/tiltpair_plot.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/star_compare src/apps/star_compare.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/find_tiltpairs src/apps/find_tiltpairs.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/autopick_mpi src/apps/autopick_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run_ctffind src/apps/run_ctffind.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/refine_mpi src/apps/refine_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_polish_mpi src/apps/particle_polish_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_sort_mpi src/apps/particle_sort_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o run_ctffind_mpi src/apps/run_ctffind_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_polish_mpi src/apps/particle_polish_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/preprocess_mpi src/apps/preprocess_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/autopick_mpi src/apps/autopick_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_sort_mpi src/apps/particle_sort_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o run_ctffind_mpi src/apps/run_ctffind_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_sort_mpi src/apps/particle_sort_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/mask_create src/apps/mask_create.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run_ctffind_mpi src/apps/run_ctffind_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_sort_mpi src/apps/particle_sort_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/stack_create src/apps/stack_create.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/image_handler src/apps/image_handler.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 make[3]: Leaving directory '/build/relion-1.4+dfsg' @@ -1749,7 +1783,7 @@ make[2]: Entering directory '/build/relion-1.4+dfsg' make[3]: Entering directory '/build/relion-1.4+dfsg' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu' - /bin/bash ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu' + /bin/sh ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/librelion-1.4.so.1.0.4 /build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so.1 || { rm -f librelion-1.4.so.1 && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so.1; }; }) libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so || { rm -f librelion-1.4.so && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so; }; }) @@ -1759,73 +1793,73 @@ libtool: install: ranlib /build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin' - /bin/bash ./libtool --mode=install /usr/bin/install -c project '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_project' + /bin/sh ./libtool --mode=install /usr/bin/install -c project '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_project' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/project /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_project - /bin/bash ./libtool --mode=install /usr/bin/install -c reconstruct '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_reconstruct' + /bin/sh ./libtool --mode=install /usr/bin/install -c reconstruct '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_reconstruct' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/reconstruct /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_reconstruct - /bin/bash ./libtool --mode=install /usr/bin/install -c refine '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_refine' + /bin/sh ./libtool --mode=install /usr/bin/install -c refine '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_refine' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_refine - /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_preprocess' + /bin/sh ./libtool --mode=install /usr/bin/install -c preprocess '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_preprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_preprocess - /bin/bash ./libtool --mode=install /usr/bin/install -c postprocess '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_postprocess' + /bin/sh ./libtool --mode=install /usr/bin/install -c postprocess '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_postprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/postprocess /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_postprocess - /bin/bash ./libtool --mode=install /usr/bin/install -c autopick '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_autopick' + /bin/sh ./libtool --mode=install /usr/bin/install -c autopick '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_autopick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_autopick - /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_polish' + /bin/sh ./libtool --mode=install /usr/bin/install -c particle_polish '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_polish' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_polish - /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_sort' + /bin/sh ./libtool --mode=install /usr/bin/install -c particle_sort '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_sort' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_sort - /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_run_ctffind' + /bin/sh ./libtool --mode=install /usr/bin/install -c run_ctffind '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_run_ctffind' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_run_ctffind - /bin/bash ./libtool --mode=install /usr/bin/install -c star_compare '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_compare' + /bin/sh ./libtool --mode=install /usr/bin/install -c star_compare '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_compare' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/star_compare /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_compare - /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_find_tiltpairs' + /bin/sh ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_find_tiltpairs - /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_tiltpair_plot' + /bin/sh ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_tiltpair_plot - /bin/bash ./libtool --mode=install /usr/bin/install -c refine_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_refine_mpi' + /bin/sh ./libtool --mode=install /usr/bin/install -c refine_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_refine_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine_mpi /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_refine_mpi - /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_preprocess_mpi' + /bin/sh ./libtool --mode=install /usr/bin/install -c preprocess_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_preprocess_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess_mpi /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_preprocess_mpi - /bin/bash ./libtool --mode=install /usr/bin/install -c autopick_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_autopick_mpi' + /bin/sh ./libtool --mode=install /usr/bin/install -c autopick_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_autopick_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick_mpi /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_autopick_mpi - /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_polish_mpi' + /bin/sh ./libtool --mode=install /usr/bin/install -c particle_polish_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_polish_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish_mpi /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_polish_mpi - /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_sort_mpi' + /bin/sh ./libtool --mode=install /usr/bin/install -c particle_sort_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_sort_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort_mpi /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_sort_mpi - /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_run_ctffind_mpi' + /bin/sh ./libtool --mode=install /usr/bin/install -c run_ctffind_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_run_ctffind_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind_mpi /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_run_ctffind_mpi - /bin/bash ./libtool --mode=install /usr/bin/install -c mask_create '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_mask_create' + /bin/sh ./libtool --mode=install /usr/bin/install -c mask_create '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_mask_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/mask_create /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_mask_create - /bin/bash ./libtool --mode=install /usr/bin/install -c stack_create '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_stack_create' + /bin/sh ./libtool --mode=install /usr/bin/install -c stack_create '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_stack_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/stack_create /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_stack_create - /bin/bash ./libtool --mode=install /usr/bin/install -c image_handler '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_image_handler' + /bin/sh ./libtool --mode=install /usr/bin/install -c image_handler '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_image_handler' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/image_handler /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_image_handler - /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_find_tiltpairs' + /bin/sh ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_find_tiltpairs - /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_tiltpair_plot' + /bin/sh ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_tiltpair_plot /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin' @@ -1974,141 +2008,142 @@ config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode -make -j15; make install prefix=/build/relion-1.4+dfsg/debian/tmp/gui/usr +make -j16; make install prefix=/build/relion-1.4+dfsg/debian/tmp/gui/usr make[2]: Entering directory '/build/relion-1.4+dfsg' make all-am make[3]: Entering directory '/build/relion-1.4+dfsg' g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/project.o src/apps/project.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid 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compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -fPIC -DPIC -o src/.libs/exp_model.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -fPIC -DPIC -o src/.libs/healpix_sampling.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -fPIC -DPIC -o src/.libs/filename.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -o src/error.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o src/args.cpp: In member function 'IOParser& IOParser::operator=(const IOParser&)': src/args.cpp:104:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -o src/error.o >/dev/null 2>&1 src/assembly.cpp: In member function 'void Assembly::writePDB(std::__cxx11::string)': src/assembly.cpp:355:19: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] fprintf(file, "ATOM %5d %-4s %3s %1c%4d %8.3f%8.3f%8.3f%6.2f%6.2f %4s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atomnum, molecules[imol].residues[ires].atoms[iatom].name.c_str(), molecules[imol].residues[ires].name.c_str(), ~~~~~~~ -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp +/bin/sh ./libtool --tag=CXX 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-I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -fPIC -DPIC -o src/.libs/displayer.o +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_entries.lo src/gui_entries.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -fPIC -DPIC -o src/.libs/gui_entries.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -o src/Healpix_2.15a/healpix_base.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -o src/particle_sorter.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -o src/symmetries.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_jobwindow.lo src/gui_jobwindow.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -fPIC -DPIC -o src/.libs/gui_jobwindow.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -o src/postprocessing.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -o src/gui_entries.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -o src/particle_sorter.o >/dev/null 2>&1 In file included from src/displayer.cpp:21: ./src/displayer.h: In member function 'int popupInputWindow::fill(std::__cxx11::string, double&)': ./src/displayer.h:327:2: warning: no return statement in function returning non-void [-Wreturn-type] @@ -2122,13 +2157,12 @@ src/displayer.cpp:429:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_jobwindow.lo src/gui_jobwindow.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_mainwindow.lo src/gui_mainwindow.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -o src/Healpix_2.15a/healpix_base.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_mainwindow.lo src/gui_mainwindow.cpp src/displayer.cpp: In member function 'int basisViewerWindow::fillCanvas(int, MetaDataTable&, EMDLabel, bool, bool, double, double, double, double, double, int, bool, MetaDataTable*, int, bool, MetaDataTable*)': src/displayer.cpp:170:36: warning: control reaches end of non-void function [-Wreturn-type] Fl_Scroll scroll(0, 0, w(), h()); ^ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -o src/gui_entries.o >/dev/null 2>&1 src/displayer.cpp: In member function 'int Displayer::runGui()': src/displayer.cpp:1783:53: warning: control reaches end of non-void function [-Wreturn-type] "Choose file to display"); // title @@ -2137,42 +2171,42 @@ src/displayer.cpp:1967:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -fPIC -DPIC -o src/.libs/gui_jobwindow.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -fPIC -DPIC -o src/.libs/gui_mainwindow.o -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/manualpicker.lo src/manualpicker.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -fPIC -DPIC -o src/.libs/manualpicker.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -o src/ml_model.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -o src/preprocessing.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/manualpicker.lo src/manualpicker.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/reconstruct.o src/apps/reconstruct.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -o src/gui_mainwindow.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -fPIC -DPIC -o src/.libs/manualpicker.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine.o src/apps/refine.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -o src/gui_mainwindow.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp -g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/postprocess.o src/apps/postprocess.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -o src/particle_polisher.o >/dev/null 2>&1 +g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/postprocess.o src/apps/postprocess.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick.o src/apps/autopick.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish.o src/apps/particle_polish.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -o src/manualpicker.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort.o src/apps/particle_sort.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind.o src/apps/run_ctffind.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/star_compare.o src/apps/star_compare.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/find_tiltpairs.o src/apps/find_tiltpairs.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/tiltpair_plot.o src/apps/tiltpair_plot.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -o src/manualpicker.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/manualpick.o src/apps/manualpick.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/display.o src/apps/display.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/maingui.o src/apps/maingui.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/mask_create.o src/apps/mask_create.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/stack_create.o src/apps/stack_create.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -o src/displayer.o >/dev/null 2>&1 +g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/image_handler.o src/apps/image_handler.cpp In file included from src/apps/display.cpp:31: ./src/displayer.h: In member function 'int popupInputWindow::fill(std::__cxx11::string, double&)': ./src/displayer.h:327:2: warning: no return statement in function returning non-void [-Wreturn-type] } ^ -g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/image_handler.o src/apps/image_handler.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -o src/displayer.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -o src/gui_jobwindow.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -o src/metadata_label.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -o src/ml_optimiser.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -lfltk -lX11 -o librelion-1.4.la -rpath /usr/lib/x86_64-linux-gnu src/args.lo src/assembly.lo src/autopicker.lo src/backprojector.lo src/complex.lo src/ctf.lo src/ctffind_runner.lo src/error.lo src/euler.lo src/exp_model.lo src/fftw.lo src/filename.lo src/funcs.lo src/healpix_sampling.lo src/image.lo src/mask.lo src/matrix1d.lo src/matrix2d.lo src/memory.lo src/metadata_container.lo src/metadata_label.lo src/metadata_table.lo src/ml_model.lo src/ml_optimiser.lo src/multidim_array.lo src/numerical_recipes.lo src/parallel.lo src/particle_polisher.lo src/particle_sorter.lo src/postprocessing.lo src/preprocessing.lo src/projector.lo src/strings.lo src/symmetries.lo src/tabfuncs.lo src/time.lo src/transformations.lo src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/healpix_base.lo src/displayer.lo src/gui_entries.lo src/gui_jobwindow.lo src/gui_mainwindow.lo src/manualpicker.lo -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -lfltk -lX11 -o librelion-1.4.la -rpath /usr/lib/x86_64-linux-gnu src/args.lo src/assembly.lo src/autopicker.lo src/backprojector.lo src/complex.lo src/ctf.lo src/ctffind_runner.lo src/error.lo src/euler.lo src/exp_model.lo src/fftw.lo src/filename.lo src/funcs.lo src/healpix_sampling.lo src/image.lo src/mask.lo src/matrix1d.lo src/matrix2d.lo src/memory.lo src/metadata_container.lo src/metadata_label.lo src/metadata_table.lo src/ml_model.lo src/ml_optimiser.lo src/multidim_array.lo src/numerical_recipes.lo src/parallel.lo src/particle_polisher.lo src/particle_sorter.lo src/postprocessing.lo src/preprocessing.lo src/projector.lo src/strings.lo src/symmetries.lo src/tabfuncs.lo src/time.lo src/transformations.lo src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/healpix_base.lo src/displayer.lo src/gui_entries.lo src/gui_jobwindow.lo src/gui_mainwindow.lo src/manualpicker.lo -lfftw3_threads -lfftw3 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o src/.libs/args.o src/.libs/assembly.o src/.libs/autopicker.o src/.libs/backprojector.o src/.libs/complex.o src/.libs/ctf.o src/.libs/ctffind_runner.o src/.libs/error.o src/.libs/euler.o src/.libs/exp_model.o src/.libs/fftw.o src/.libs/filename.o src/.libs/funcs.o src/.libs/healpix_sampling.o src/.libs/image.o src/.libs/mask.o src/.libs/matrix1d.o src/.libs/matrix2d.o src/.libs/memory.o src/.libs/metadata_container.o src/.libs/metadata_label.o src/.libs/metadata_table.o src/.libs/ml_model.o src/.libs/ml_optimiser.o src/.libs/multidim_array.o src/.libs/numerical_recipes.o src/.libs/parallel.o src/.libs/particle_polisher.o src/.libs/particle_sorter.o src/.libs/postprocessing.o src/.libs/preprocessing.o src/.libs/projector.o src/.libs/strings.o src/.libs/symmetries.o src/.libs/tabfuncs.o src/.libs/time.o src/.libs/transformations.o src/Healpix_2.15a/.libs/cxxutils.o src/Healpix_2.15a/.libs/healpix_base.o src/.libs/displayer.o src/.libs/gui_entries.o src/.libs/gui_jobwindow.o src/.libs/gui_mainwindow.o src/.libs/manualpicker.o -lfltk -lX11 -lfftw3_threads -lfftw3 -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-soname -Wl,librelion-1.4.so.1 -o .libs/librelion-1.4.so.1.0.4 libtool: link: (cd ".libs" && rm -f "librelion-1.4.so.1" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so.1") libtool: link: (cd ".libs" && rm -f "librelion-1.4.so" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so") @@ -2180,48 +2214,48 @@ ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librelion-1.4.a libtool: link: ( cd ".libs" && rm -f "librelion-1.4.la" && ln -s "../librelion-1.4.la" "librelion-1.4.la" ) -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o manualpick src/apps/manualpick.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o display src/apps/display.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o maingui src/apps/maingui.o librelion-1.4.la -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_polish src/apps/particle_polish.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess src/apps/preprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o manualpick src/apps/manualpick.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o display src/apps/display.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o maingui src/apps/maingui.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/refine src/apps/refine.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/reconstruct src/apps/reconstruct.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/project src/apps/project.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort src/apps/particle_sort.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/postprocess src/apps/postprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind src/apps/run_ctffind.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/maingui src/apps/maingui.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick src/apps/autopick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/manualpick src/apps/manualpick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind src/apps/run_ctffind.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/reconstruct src/apps/reconstruct.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort src/apps/particle_sort.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess src/apps/preprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_polish src/apps/particle_polish.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/find_tiltpairs src/apps/find_tiltpairs.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/tiltpair_plot src/apps/tiltpair_plot.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/star_compare src/apps/star_compare.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/postprocess src/apps/postprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/manualpick src/apps/manualpick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/display src/apps/display.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/maingui src/apps/maingui.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/find_tiltpairs src/apps/find_tiltpairs.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/image_handler src/apps/image_handler.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/mask_create src/apps/mask_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/image_handler src/apps/image_handler.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/stack_create src/apps/stack_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 make[3]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Entering directory '/build/relion-1.4+dfsg' make[3]: Entering directory '/build/relion-1.4+dfsg' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu' - /bin/bash ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu' + /bin/sh ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/librelion-1.4.so.1.0.4 /build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so.1 || { rm -f librelion-1.4.so.1 && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so.1; }; }) libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so || { rm -f librelion-1.4.so && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so; }; }) @@ -2231,64 +2265,64 @@ libtool: install: ranlib /build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin' - /bin/bash ./libtool --mode=install /usr/bin/install -c project '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_project' + /bin/sh ./libtool --mode=install /usr/bin/install -c project '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_project' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/project /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_project - /bin/bash ./libtool --mode=install /usr/bin/install -c reconstruct '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_reconstruct' + /bin/sh ./libtool --mode=install /usr/bin/install -c reconstruct '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_reconstruct' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/reconstruct /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_reconstruct - /bin/bash ./libtool --mode=install /usr/bin/install -c refine '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_refine' + /bin/sh ./libtool --mode=install /usr/bin/install -c refine '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_refine' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_refine - /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_preprocess' + /bin/sh ./libtool --mode=install /usr/bin/install -c preprocess '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_preprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_preprocess - /bin/bash ./libtool --mode=install /usr/bin/install -c postprocess '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_postprocess' + /bin/sh ./libtool --mode=install /usr/bin/install -c postprocess '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_postprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/postprocess /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_postprocess - /bin/bash ./libtool --mode=install /usr/bin/install -c autopick '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_autopick' + /bin/sh ./libtool --mode=install /usr/bin/install -c autopick '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_autopick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_autopick - /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_particle_polish' + /bin/sh ./libtool --mode=install /usr/bin/install -c particle_polish '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_particle_polish' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_particle_polish - /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_particle_sort' + /bin/sh ./libtool --mode=install /usr/bin/install -c particle_sort '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_particle_sort' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_particle_sort - /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_run_ctffind' + /bin/sh ./libtool --mode=install /usr/bin/install -c run_ctffind '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_run_ctffind' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_run_ctffind - /bin/bash ./libtool --mode=install /usr/bin/install -c star_compare '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_compare' + /bin/sh ./libtool --mode=install /usr/bin/install -c star_compare '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_compare' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/star_compare /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_compare - /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_find_tiltpairs' + /bin/sh ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_find_tiltpairs - /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_tiltpair_plot' + /bin/sh ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_tiltpair_plot - /bin/bash ./libtool --mode=install /usr/bin/install -c manualpick '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_manualpick' + /bin/sh ./libtool --mode=install /usr/bin/install -c manualpick '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_manualpick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/manualpick /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_manualpick - /bin/bash ./libtool --mode=install /usr/bin/install -c display '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_display' + /bin/sh ./libtool --mode=install /usr/bin/install -c display '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_display' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/display /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_display - /bin/bash ./libtool --mode=install /usr/bin/install -c maingui '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_maingui' + /bin/sh ./libtool --mode=install /usr/bin/install -c maingui '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_maingui' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/maingui /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_maingui - /bin/bash ./libtool --mode=install /usr/bin/install -c mask_create '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_mask_create' + /bin/sh ./libtool --mode=install /usr/bin/install -c mask_create '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_mask_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/mask_create /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_mask_create - /bin/bash ./libtool --mode=install /usr/bin/install -c stack_create '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_stack_create' + /bin/sh ./libtool --mode=install /usr/bin/install -c stack_create '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_stack_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/stack_create /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_stack_create - /bin/bash ./libtool --mode=install /usr/bin/install -c image_handler '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_image_handler' + /bin/sh ./libtool --mode=install /usr/bin/install -c image_handler '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_image_handler' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/image_handler /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_image_handler - /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_find_tiltpairs' + /bin/sh ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_find_tiltpairs - /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_tiltpair_plot' + /bin/sh ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_tiltpair_plot /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin' @@ -2438,137 +2472,136 @@ config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode -make -j15; make install prefix=/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr +make -j16; make install prefix=/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr make[2]: Entering directory '/build/relion-1.4+dfsg' make all-am make[3]: Entering directory '/build/relion-1.4+dfsg' mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/project.o src/apps/project.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner.lo src/ctffind_runner.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/fftw.lo src/fftw.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/filename.lo src/filename.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/funcs.lo src/funcs.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner.lo src/ctffind_runner.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/fftw.lo src/fftw.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/filename.lo src/filename.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/funcs.lo src/funcs.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -fPIC -DPIC -o src/.libs/healpix_sampling.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -fPIC -DPIC -o src/.libs/exp_model.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -fPIC -DPIC -o src/.libs/filename.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -fPIC -DPIC -o src/.libs/healpix_sampling.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -fPIC -DPIC -o src/.libs/filename.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -o src/error.o >/dev/null 2>&1 +src/args.cpp: In member function 'IOParser& IOParser::operator=(const IOParser&)': +src/args.cpp:104:1: warning: no return statement in function returning non-void [-Wreturn-type] + } + ^ +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 src/assembly.cpp: In member function 'void Assembly::writePDB(std::__cxx11::string)': src/assembly.cpp:355:19: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] fprintf(file, "ATOM %5d %-4s %3s %1c%4d %8.3f%8.3f%8.3f%6.2f%6.2f %4s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atomnum, molecules[imol].residues[ires].atoms[iatom].name.c_str(), molecules[imol].residues[ires].name.c_str(), ~~~~~~~ -src/args.cpp: In member function 'IOParser& IOParser::operator=(const IOParser&)': -src/args.cpp:104:1: warning: no return statement in function returning non-void [-Wreturn-type] - } - ^ -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -o src/funcs.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -fPIC -DPIC -o src/.libs/mask.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -o src/euler.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix1d.lo src/matrix1d.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -o src/funcs.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix1d.lo src/matrix1d.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -fPIC -DPIC -o src/.libs/matrix1d.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -o src/euler.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -o src/args.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -o src/filename.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -o src/ctf.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -o src/mask.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -o src/matrix1d.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix2d.lo src/matrix2d.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -o src/ctf.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -o src/filename.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix2d.lo src/matrix2d.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -fPIC -DPIC -o src/.libs/matrix2d.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/memory.lo src/memory.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -o src/image.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -o src/fftw.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/memory.lo src/memory.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -fPIC -DPIC -o src/.libs/memory.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_container.lo src/metadata_container.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -o src/mask.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_container.lo src/metadata_container.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -o src/matrix2d.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -fPIC -DPIC -o src/.libs/metadata_container.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_label.lo src/metadata_label.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_table.lo src/metadata_table.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -fPIC -DPIC -o src/.libs/metadata_label.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_model.lo src/ml_model.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -o src/memory.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_label.lo src/metadata_label.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -fPIC -DPIC -o src/.libs/metadata_label.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_table.lo src/metadata_table.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -fPIC -DPIC -o src/.libs/metadata_table.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_model.lo src/ml_model.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -o src/fftw.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser.lo src/ml_optimiser.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -fPIC -DPIC -o src/.libs/ml_model.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -o src/assembly.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser.lo src/ml_optimiser.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/multidim_array.lo src/multidim_array.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -o src/backprojector.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -fPIC -DPIC -o src/.libs/ml_optimiser.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -o src/ctffind_runner.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/multidim_array.lo src/multidim_array.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -fPIC -DPIC -o src/.libs/multidim_array.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/numerical_recipes.lo src/numerical_recipes.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -o src/healpix_sampling.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -fPIC -DPIC -o src/.libs/numerical_recipes.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/parallel.lo src/parallel.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -o src/multidim_array.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/numerical_recipes.lo src/numerical_recipes.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -o src/metadata_container.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -fPIC -DPIC -o src/.libs/numerical_recipes.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/parallel.lo src/parallel.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -o src/backprojector.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -fPIC -DPIC -o src/.libs/parallel.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -o src/exp_model.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -o src/assembly.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -o src/parallel.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -o src/numerical_recipes.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher.lo src/particle_polisher.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -o src/multidim_array.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher.lo src/particle_polisher.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -fPIC -DPIC -o src/.libs/particle_polisher.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter.lo src/particle_sorter.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -o src/numerical_recipes.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter.lo src/particle_sorter.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/postprocessing.lo src/postprocessing.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -fPIC -DPIC -o src/.libs/particle_sorter.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -o src/metadata_table.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/postprocessing.lo src/postprocessing.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -o src/autopicker.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing.lo src/preprocessing.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -fPIC -DPIC -o src/.libs/postprocessing.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -o src/ctffind_runner.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -o src/healpix_sampling.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing.lo src/preprocessing.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -fPIC -DPIC -o src/.libs/preprocessing.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/projector.lo src/projector.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/strings.lo src/strings.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include 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-I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -fPIC -DPIC -o src/.libs/strings.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/symmetries.lo src/symmetries.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/symmetries.lo src/symmetries.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -fPIC -DPIC -o src/.libs/symmetries.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -o src/strings.o >/dev/null 2>&1 -/bin/bash ./libtool 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-I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tabfuncs.lo src/tabfuncs.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -fPIC -DPIC -o src/.libs/tabfuncs.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/time.lo src/time.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -o src/strings.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -o src/tabfuncs.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/time.lo src/time.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -fPIC -DPIC -o src/.libs/time.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/transformations.lo src/transformations.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/transformations.lo src/transformations.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -fPIC -DPIC -o src/.libs/transformations.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/cxxutils.cc src/time.cpp: In member function 'int Timer::toc(int)': src/time.cpp:223:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/cxxutils.cc -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -o src/tabfuncs.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -o src/time.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/cxxutils.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -o src/projector.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -o src/transformations.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/healpix_base.lo src/Healpix_2.15a/healpix_base.cc +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -o src/postprocessing.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -o src/time.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/healpix_base.lo src/Healpix_2.15a/healpix_base.cc libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/healpix_base.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mpi.lo src/mpi.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker_mpi.lo src/autopicker_mpi.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -o src/ml_model.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -o src/projector.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -o src/particle_sorter.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mpi.lo src/mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -fPIC -DPIC -o src/.libs/mpi.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -fPIC -DPIC -o src/.libs/autopicker_mpi.o src/mpi.cpp: In constructor 'MpiNode::MpiNode(int&, char**)': src/mpi.cpp:56:57: warning: 'int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler)' is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set(MPI_COMM_WORLD, MPI_ERRORS_RETURN); @@ -2586,30 +2619,41 @@ /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1338:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner_mpi.lo src/ctffind_runner_mpi.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -o src/postprocessing.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -o src/particle_sorter.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -fPIC -DPIC -o src/.libs/ctffind_runner_mpi.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker_mpi.lo src/autopicker_mpi.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -o src/ml_model.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -o src/symmetries.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -fPIC -DPIC -o src/.libs/autopicker_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -o src/Healpix_2.15a/healpix_base.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner_mpi.lo src/ctffind_runner_mpi.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -fPIC -DPIC -o src/.libs/ctffind_runner_mpi.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher_mpi.lo src/particle_polisher_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -o src/mpi.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher_mpi.lo src/particle_polisher_mpi.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -o src/preprocessing.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -fPIC -DPIC -o src/.libs/particle_polisher_mpi.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -o src/autopicker_mpi.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -o src/symmetries.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter_mpi.lo src/particle_sorter_mpi.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter_mpi.lo src/particle_sorter_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -fPIC -DPIC -o src/.libs/particle_sorter_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -o src/ctffind_runner_mpi.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing_mpi.lo src/preprocessing_mpi.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -o src/autopicker_mpi.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing_mpi.lo src/preprocessing_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -fPIC -DPIC -o src/.libs/preprocessing_mpi.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -o src/preprocessing.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser_mpi.lo src/ml_optimiser_mpi.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/displayer.lo src/displayer.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser_mpi.lo src/ml_optimiser_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -fPIC -DPIC -o src/.libs/ml_optimiser_mpi.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -o src/particle_polisher.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/displayer.lo src/displayer.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -fPIC -DPIC -o src/.libs/displayer.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_entries.lo src/gui_entries.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_entries.lo src/gui_entries.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_jobwindow.lo src/gui_jobwindow.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -fPIC -DPIC -o src/.libs/gui_jobwindow.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -fPIC -DPIC -o src/.libs/gui_entries.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -o src/particle_polisher.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -o src/particle_sorter_mpi.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_mainwindow.lo src/gui_mainwindow.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/manualpicker.lo src/manualpicker.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -fPIC -DPIC -o src/.libs/gui_mainwindow.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -o src/gui_entries.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -fPIC -DPIC -o src/.libs/manualpicker.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -o src/preprocessing_mpi.o >/dev/null 2>&1 +mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/reconstruct.o src/apps/reconstruct.cpp In file included from src/displayer.cpp:21: ./src/displayer.h: In member function 'int popupInputWindow::fill(std::__cxx11::string, double&)': ./src/displayer.h:327:2: warning: no return statement in function returning non-void [-Wreturn-type] @@ -2623,13 +2667,13 @@ src/displayer.cpp:429:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_jobwindow.lo src/gui_jobwindow.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -o src/particle_sorter_mpi.o >/dev/null 2>&1 +mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine.o src/apps/refine.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -o src/particle_polisher_mpi.o >/dev/null 2>&1 src/displayer.cpp: In member function 'int basisViewerWindow::fillCanvas(int, MetaDataTable&, EMDLabel, bool, bool, double, double, double, double, double, int, bool, MetaDataTable*, int, bool, MetaDataTable*)': src/displayer.cpp:170:36: warning: control reaches end of non-void function [-Wreturn-type] Fl_Scroll scroll(0, 0, w(), h()); ^ -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -fPIC -DPIC -o src/.libs/gui_jobwindow.o +mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp src/displayer.cpp: In member function 'int Displayer::runGui()': src/displayer.cpp:1783:53: warning: control reaches end of non-void function [-Wreturn-type] "Choose file to display"); // title @@ -2638,49 +2682,39 @@ src/displayer.cpp:1967:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -o src/gui_entries.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -o src/preprocessing_mpi.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -o src/particle_polisher_mpi.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_mainwindow.lo src/gui_mainwindow.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -fPIC -DPIC -o src/.libs/gui_mainwindow.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/manualpicker.lo src/manualpicker.cpp -mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/reconstruct.o src/apps/reconstruct.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -fPIC -DPIC -o src/.libs/manualpicker.o -mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine.o src/apps/refine.cpp -mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/postprocess.o src/apps/postprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick.o src/apps/autopick.cpp -mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish.o src/apps/particle_polish.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -o src/gui_mainwindow.o >/dev/null 2>&1 +mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish.o src/apps/particle_polish.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort.o src/apps/particle_sort.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind.o src/apps/run_ctffind.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/star_compare.o src/apps/star_compare.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -o src/metadata_label.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/find_tiltpairs.o src/apps/find_tiltpairs.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/tiltpair_plot.o src/apps/tiltpair_plot.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -o src/ml_optimiser_mpi.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine_mpi.o src/apps/refine_mpi.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -o src/ml_optimiser_mpi.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess_mpi.o src/apps/preprocess_mpi.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -o src/manualpicker.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick_mpi.o src/apps/autopick_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish_mpi.o src/apps/particle_polish_mpi.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -o src/manualpicker.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort_mpi.o src/apps/particle_sort_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind_mpi.o src/apps/run_ctffind_mpi.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -o src/displayer.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/manualpick.o src/apps/manualpick.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -o src/gui_jobwindow.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/display.o src/apps/display.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/maingui.o src/apps/maingui.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/mask_create.o src/apps/mask_create.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/stack_create.o src/apps/stack_create.cpp -mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/image_handler.o src/apps/image_handler.cpp In file included from src/apps/display.cpp:31: ./src/displayer.h: In member function 'int popupInputWindow::fill(std::__cxx11::string, double&)': ./src/displayer.h:327:2: warning: no return statement in function returning non-void [-Wreturn-type] } ^ +mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/image_handler.o src/apps/image_handler.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -o src/gui_jobwindow.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -o src/metadata_label.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -o src/displayer.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -o src/ml_optimiser.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -lfltk -lX11 -o librelion-1.4.la -rpath /usr/lib/x86_64-linux-gnu src/args.lo src/assembly.lo src/autopicker.lo src/backprojector.lo src/complex.lo src/ctf.lo src/ctffind_runner.lo src/error.lo src/euler.lo src/exp_model.lo src/fftw.lo src/filename.lo src/funcs.lo src/healpix_sampling.lo src/image.lo src/mask.lo src/matrix1d.lo src/matrix2d.lo src/memory.lo src/metadata_container.lo src/metadata_label.lo src/metadata_table.lo src/ml_model.lo src/ml_optimiser.lo src/multidim_array.lo src/numerical_recipes.lo src/parallel.lo src/particle_polisher.lo src/particle_sorter.lo src/postprocessing.lo src/preprocessing.lo src/projector.lo src/strings.lo src/symmetries.lo src/tabfuncs.lo src/time.lo src/transformations.lo src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/healpix_base.lo src/mpi.lo src/autopicker_mpi.lo src/ctffind_runner_mpi.lo src/particle_polisher_mpi.lo src/particle_sorter_mpi.lo src/preprocessing_mpi.lo src/ml_optimiser_mpi.lo src/displayer.lo src/gui_entries.lo src/gui_jobwindow.lo src/gui_mainwindow.lo src/manualpicker.lo -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -lfltk -lX11 -o librelion-1.4.la -rpath 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src/manualpicker.lo -lfftw3_threads -lfftw3 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o src/.libs/args.o src/.libs/assembly.o src/.libs/autopicker.o src/.libs/backprojector.o src/.libs/complex.o src/.libs/ctf.o src/.libs/ctffind_runner.o src/.libs/error.o src/.libs/euler.o src/.libs/exp_model.o src/.libs/fftw.o src/.libs/filename.o src/.libs/funcs.o src/.libs/healpix_sampling.o src/.libs/image.o src/.libs/mask.o src/.libs/matrix1d.o src/.libs/matrix2d.o src/.libs/memory.o src/.libs/metadata_container.o src/.libs/metadata_label.o src/.libs/metadata_table.o src/.libs/ml_model.o src/.libs/ml_optimiser.o src/.libs/multidim_array.o src/.libs/numerical_recipes.o src/.libs/parallel.o src/.libs/particle_polisher.o src/.libs/particle_sorter.o src/.libs/postprocessing.o src/.libs/preprocessing.o src/.libs/projector.o src/.libs/strings.o src/.libs/symmetries.o src/.libs/tabfuncs.o src/.libs/time.o src/.libs/transformations.o src/Healpix_2.15a/.libs/cxxutils.o src/Healpix_2.15a/.libs/healpix_base.o src/.libs/mpi.o src/.libs/autopicker_mpi.o src/.libs/ctffind_runner_mpi.o src/.libs/particle_polisher_mpi.o src/.libs/particle_sorter_mpi.o src/.libs/preprocessing_mpi.o src/.libs/ml_optimiser_mpi.o src/.libs/displayer.o src/.libs/gui_entries.o src/.libs/gui_jobwindow.o src/.libs/gui_mainwindow.o src/.libs/manualpicker.o -lfltk -lX11 -lfftw3_threads -lfftw3 -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-soname -Wl,librelion-1.4.so.1 -o .libs/librelion-1.4.so.1.0.4 libtool: link: (cd 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librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine_mpi src/apps/refine_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess_mpi src/apps/preprocess_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick_mpi src/apps/autopick_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick src/apps/autopick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/postprocess src/apps/postprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/reconstruct src/apps/reconstruct.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort src/apps/particle_sort.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind src/apps/run_ctffind.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. 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-ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick src/apps/autopick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort src/apps/particle_sort.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess src/apps/preprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/tiltpair_plot src/apps/tiltpair_plot.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/star_compare src/apps/star_compare.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/find_tiltpairs src/apps/find_tiltpairs.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess src/apps/preprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess_mpi src/apps/preprocess_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_polish_mpi src/apps/particle_polish_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick_mpi src/apps/autopick_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/refine_mpi src/apps/refine_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish_mpi src/apps/particle_polish_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort_mpi src/apps/particle_sort_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind_mpi src/apps/run_ctffind_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o manualpick src/apps/manualpick.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o display src/apps/display.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o maingui src/apps/maingui.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_polish_mpi src/apps/particle_polish_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind_mpi src/apps/run_ctffind_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort_mpi src/apps/particle_sort_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind_mpi src/apps/run_ctffind_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o manualpick src/apps/manualpick.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o display src/apps/display.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o maingui src/apps/maingui.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort_mpi src/apps/particle_sort_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/display src/apps/display.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind_mpi src/apps/run_ctffind_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/manualpick src/apps/manualpick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/display src/apps/display.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/maingui src/apps/maingui.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/mask_create src/apps/mask_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/stack_create src/apps/stack_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/image_handler src/apps/image_handler.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/stack_create src/apps/stack_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 make[3]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Entering directory '/build/relion-1.4+dfsg' make[3]: Entering directory '/build/relion-1.4+dfsg' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu' - /bin/bash ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu' + /bin/sh ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/librelion-1.4.so.1.0.4 /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so.1 || { rm -f librelion-1.4.so.1 && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so.1; }; }) libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so || { rm -f librelion-1.4.so && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so; }; }) @@ -2751,82 +2785,82 @@ libtool: install: ranlib /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin' - /bin/bash ./libtool --mode=install /usr/bin/install -c project '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_project' + /bin/sh ./libtool --mode=install /usr/bin/install -c project '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_project' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/project /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_project - /bin/bash ./libtool --mode=install /usr/bin/install -c reconstruct '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_reconstruct' + /bin/sh ./libtool --mode=install /usr/bin/install -c reconstruct '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_reconstruct' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/reconstruct /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_reconstruct - /bin/bash ./libtool --mode=install /usr/bin/install -c refine '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_refine' + /bin/sh ./libtool --mode=install /usr/bin/install -c refine '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_refine' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_refine - /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_preprocess' + /bin/sh ./libtool --mode=install /usr/bin/install -c preprocess '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_preprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_preprocess - /bin/bash ./libtool --mode=install /usr/bin/install -c postprocess '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_postprocess' + /bin/sh ./libtool --mode=install /usr/bin/install -c postprocess '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_postprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/postprocess /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_postprocess - /bin/bash ./libtool --mode=install /usr/bin/install -c autopick '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_autopick' + /bin/sh ./libtool --mode=install /usr/bin/install -c autopick '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_autopick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_autopick - /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_polish' + /bin/sh ./libtool --mode=install /usr/bin/install -c particle_polish '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_polish' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_polish - /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_sort' + /bin/sh ./libtool --mode=install /usr/bin/install -c particle_sort '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_sort' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_sort - /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_run_ctffind' + /bin/sh ./libtool --mode=install /usr/bin/install -c run_ctffind '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_run_ctffind' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_run_ctffind - /bin/bash ./libtool --mode=install /usr/bin/install -c star_compare '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_compare' + /bin/sh ./libtool --mode=install /usr/bin/install -c star_compare '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_compare' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/star_compare /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_compare - /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_find_tiltpairs' + /bin/sh ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_find_tiltpairs - /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_tiltpair_plot' + /bin/sh ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_tiltpair_plot - /bin/bash ./libtool --mode=install /usr/bin/install -c refine_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_refine_mpi' + /bin/sh ./libtool --mode=install /usr/bin/install -c refine_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_refine_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine_mpi /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_refine_mpi - /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_preprocess_mpi' + /bin/sh ./libtool --mode=install /usr/bin/install -c preprocess_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_preprocess_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess_mpi /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_preprocess_mpi - /bin/bash ./libtool --mode=install /usr/bin/install -c autopick_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_autopick_mpi' + /bin/sh ./libtool --mode=install /usr/bin/install -c autopick_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_autopick_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick_mpi /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_autopick_mpi - /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_polish_mpi' + /bin/sh ./libtool --mode=install /usr/bin/install -c particle_polish_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_polish_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish_mpi /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_polish_mpi - /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_sort_mpi' + /bin/sh ./libtool --mode=install /usr/bin/install -c particle_sort_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_sort_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort_mpi /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_sort_mpi - /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_run_ctffind_mpi' + /bin/sh ./libtool --mode=install /usr/bin/install -c run_ctffind_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_run_ctffind_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind_mpi /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_run_ctffind_mpi - /bin/bash ./libtool --mode=install /usr/bin/install -c manualpick '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_manualpick' + /bin/sh ./libtool --mode=install /usr/bin/install -c manualpick '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_manualpick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/manualpick /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_manualpick - /bin/bash ./libtool --mode=install /usr/bin/install -c display '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_display' + /bin/sh ./libtool --mode=install /usr/bin/install -c display '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_display' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/display /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_display - /bin/bash ./libtool --mode=install /usr/bin/install -c maingui '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_maingui' + /bin/sh ./libtool --mode=install /usr/bin/install -c maingui '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_maingui' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/maingui /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_maingui - /bin/bash ./libtool --mode=install /usr/bin/install -c mask_create '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_mask_create' + /bin/sh ./libtool --mode=install /usr/bin/install -c mask_create '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_mask_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/mask_create /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_mask_create - /bin/bash ./libtool --mode=install /usr/bin/install -c stack_create '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_stack_create' + /bin/sh ./libtool --mode=install /usr/bin/install -c stack_create '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_stack_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/stack_create /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_stack_create - /bin/bash ./libtool --mode=install /usr/bin/install -c image_handler '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_image_handler' + /bin/sh ./libtool --mode=install /usr/bin/install -c image_handler '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_image_handler' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/image_handler /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_image_handler - /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_find_tiltpairs' + /bin/sh ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_find_tiltpairs - /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_tiltpair_plot' + /bin/sh ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_tiltpair_plot /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin' @@ -2870,136 +2904,135 @@ sed -i "/dependency_libs/ s/'.*'/''/" $(find debian/tmp/ -name '*.la') make[1]: Leaving directory '/build/relion-1.4+dfsg' dh_auto_test - make -j15 check VERBOSE=1 + make -j16 check VERBOSE=1 make[1]: Entering directory '/build/relion-1.4+dfsg' mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/project.o src/apps/project.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner.lo src/ctffind_runner.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/fftw.lo src/fftw.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/filename.lo src/filename.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/funcs.lo src/funcs.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 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-I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 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-I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/fftw.lo src/fftw.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/filename.lo src/filename.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/funcs.lo src/funcs.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -fPIC -DPIC -o src/.libs/exp_model.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -fPIC -DPIC -o src/.libs/filename.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -fPIC -DPIC -o src/.libs/exp_model.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -fPIC -DPIC -o src/.libs/healpix_sampling.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -o src/error.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 +src/args.cpp: In member function 'IOParser& IOParser::operator=(const IOParser&)': +src/args.cpp:104:1: warning: no return statement in function returning non-void [-Wreturn-type] + } + ^ +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp src/assembly.cpp: In member function 'void Assembly::writePDB(std::__cxx11::string)': src/assembly.cpp:355:19: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] fprintf(file, "ATOM %5d %-4s %3s %1c%4d %8.3f%8.3f%8.3f%6.2f%6.2f %4s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atomnum, molecules[imol].residues[ires].atoms[iatom].name.c_str(), molecules[imol].residues[ires].name.c_str(), ~~~~~~~ -src/args.cpp: In member function 'IOParser& IOParser::operator=(const IOParser&)': -src/args.cpp:104:1: warning: no return statement in function returning non-void [-Wreturn-type] - } - ^ -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -o src/funcs.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix1d.lo src/matrix1d.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -fPIC -DPIC -o src/.libs/mask.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -fPIC -DPIC -o src/.libs/matrix1d.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -o src/funcs.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -o src/euler.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -o src/ctf.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -o src/matrix1d.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix2d.lo src/matrix2d.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -o src/args.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -o src/filename.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix1d.lo src/matrix1d.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix2d.lo src/matrix2d.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -o src/ctf.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -fPIC -DPIC -o src/.libs/matrix2d.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -fPIC -DPIC -o src/.libs/matrix1d.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/memory.lo src/memory.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -o src/filename.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -o src/mask.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -o src/matrix2d.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -o src/matrix1d.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -o src/image.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -o src/fftw.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -o src/backprojector.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/memory.lo src/memory.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_container.lo src/metadata_container.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -fPIC -DPIC -o src/.libs/memory.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_container.lo src/metadata_container.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -o src/image.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -fPIC -DPIC -o src/.libs/metadata_container.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_label.lo src/metadata_label.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_table.lo src/metadata_table.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -o src/memory.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -o src/matrix2d.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_label.lo src/metadata_label.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -fPIC -DPIC -o src/.libs/metadata_label.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_table.lo src/metadata_table.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_model.lo src/ml_model.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -fPIC -DPIC -o src/.libs/metadata_table.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_model.lo src/ml_model.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser.lo src/ml_optimiser.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -fPIC -DPIC -o src/.libs/ml_model.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -fPIC -DPIC -o src/.libs/ml_optimiser.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -o src/memory.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -o src/assembly.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/multidim_array.lo src/multidim_array.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -fPIC -DPIC -o src/.libs/multidim_array.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -o src/fftw.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -o src/metadata_container.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/numerical_recipes.lo src/numerical_recipes.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -o src/healpix_sampling.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -o src/ctffind_runner.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser.lo src/ml_optimiser.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -fPIC -DPIC -o src/.libs/ml_optimiser.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/multidim_array.lo src/multidim_array.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/numerical_recipes.lo src/numerical_recipes.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -fPIC -DPIC -o src/.libs/numerical_recipes.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/parallel.lo src/parallel.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -o src/multidim_array.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -fPIC -DPIC -o src/.libs/multidim_array.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/parallel.lo src/parallel.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -fPIC -DPIC -o src/.libs/parallel.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -o src/exp_model.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -o src/numerical_recipes.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -o src/assembly.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -o src/backprojector.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -o src/multidim_array.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -o src/parallel.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher.lo src/particle_polisher.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter.lo src/particle_sorter.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -o src/numerical_recipes.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher.lo src/particle_polisher.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -fPIC -DPIC -o src/.libs/particle_polisher.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -o src/healpix_sampling.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -o src/ctffind_runner.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter.lo src/particle_sorter.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/postprocessing.lo src/postprocessing.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing.lo src/preprocessing.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -fPIC -DPIC -o src/.libs/particle_sorter.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -o src/metadata_table.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -o src/autopicker.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/postprocessing.lo src/postprocessing.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -fPIC -DPIC -o src/.libs/postprocessing.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing.lo src/preprocessing.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/projector.lo src/projector.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -fPIC -DPIC -o src/.libs/preprocessing.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -fPIC -DPIC -o src/.libs/postprocessing.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/projector.lo src/projector.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -fPIC -DPIC -o src/.libs/projector.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/strings.lo src/strings.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -o src/exp_model.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -o src/metadata_table.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -o src/autopicker.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/strings.lo src/strings.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -fPIC -DPIC -o src/.libs/strings.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/symmetries.lo src/symmetries.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -fPIC -DPIC -o src/.libs/symmetries.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -o src/strings.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tabfuncs.lo src/tabfuncs.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/symmetries.lo src/symmetries.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -fPIC -DPIC -o src/.libs/symmetries.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tabfuncs.lo src/tabfuncs.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -fPIC -DPIC -o src/.libs/tabfuncs.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/time.lo src/time.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -o src/projector.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/time.lo src/time.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -fPIC -DPIC -o src/.libs/time.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/transformations.lo src/transformations.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -o src/tabfuncs.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/transformations.lo src/transformations.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -fPIC -DPIC -o src/.libs/transformations.o src/time.cpp: In member function 'int Timer::toc(int)': src/time.cpp:223:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -fPIC -DPIC -o src/.libs/transformations.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -o src/time.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -o src/projector.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -o src/tabfuncs.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/cxxutils.cc +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/cxxutils.cc libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/cxxutils.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/healpix_base.lo src/Healpix_2.15a/healpix_base.cc +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/healpix_base.lo src/Healpix_2.15a/healpix_base.cc +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -o src/transformations.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mpi.lo src/mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/healpix_base.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mpi.lo src/mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -fPIC -DPIC -o src/.libs/mpi.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -o src/transformations.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker_mpi.lo src/autopicker_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -o src/particle_sorter.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker_mpi.lo src/autopicker_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -fPIC -DPIC -o src/.libs/autopicker_mpi.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -o src/ml_model.o >/dev/null 2>&1 src/mpi.cpp: In constructor 'MpiNode::MpiNode(int&, char**)': src/mpi.cpp:56:57: warning: 'int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler)' is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set(MPI_COMM_WORLD, MPI_ERRORS_RETURN); @@ -3017,32 +3050,27 @@ /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1338:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -o src/symmetries.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -o src/Healpix_2.15a/healpix_base.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -o src/mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -o src/postprocessing.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -o src/preprocessing.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner_mpi.lo src/ctffind_runner_mpi.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher_mpi.lo src/particle_polisher_mpi.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -o src/mpi.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -o src/ml_model.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -o src/Healpix_2.15a/healpix_base.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner_mpi.lo src/ctffind_runner_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -fPIC -DPIC -o src/.libs/ctffind_runner_mpi.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter_mpi.lo src/particle_sorter_mpi.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -o src/preprocessing.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher_mpi.lo src/particle_polisher_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -fPIC -DPIC -o src/.libs/particle_polisher_mpi.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -o src/autopicker_mpi.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -o src/symmetries.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter_mpi.lo src/particle_sorter_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -fPIC -DPIC -o src/.libs/particle_sorter_mpi.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing_mpi.lo src/preprocessing_mpi.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser_mpi.lo src/ml_optimiser_mpi.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing_mpi.lo src/preprocessing_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -fPIC -DPIC -o src/.libs/preprocessing_mpi.o +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser_mpi.lo src/ml_optimiser_mpi.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -o src/autopicker_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -fPIC -DPIC -o src/.libs/ml_optimiser_mpi.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -o src/ctffind_runner_mpi.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/displayer.lo src/displayer.cpp +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/displayer.lo src/displayer.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -fPIC -DPIC -o src/.libs/displayer.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -o src/preprocessing_mpi.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -o src/particle_sorter_mpi.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_entries.lo src/gui_entries.cpp -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_jobwindow.lo src/gui_jobwindow.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -fPIC -DPIC -o src/.libs/gui_entries.o -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_mainwindow.lo src/gui_mainwindow.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -o src/ctffind_runner_mpi.o >/dev/null 2>&1 In file included from src/displayer.cpp:21: ./src/displayer.h: In member function 'int popupInputWindow::fill(std::__cxx11::string, double&)': ./src/displayer.h:327:2: warning: no return statement in function returning non-void [-Wreturn-type] @@ -3056,14 +3084,10 @@ src/displayer.cpp:429:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -fPIC -DPIC -o src/.libs/gui_jobwindow.o -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -o src/particle_polisher.o >/dev/null 2>&1 src/displayer.cpp: In member function 'int basisViewerWindow::fillCanvas(int, MetaDataTable&, EMDLabel, bool, bool, double, double, double, double, double, int, bool, MetaDataTable*, int, bool, MetaDataTable*)': src/displayer.cpp:170:36: warning: control reaches end of non-void function [-Wreturn-type] Fl_Scroll scroll(0, 0, w(), h()); ^ -/bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/manualpicker.lo src/manualpicker.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -fPIC -DPIC -o src/.libs/gui_mainwindow.o src/displayer.cpp: In member function 'int Displayer::runGui()': src/displayer.cpp:1783:53: warning: control reaches end of non-void function [-Wreturn-type] "Choose file to display"); // title @@ -3072,12 +3096,22 @@ src/displayer.cpp:1967:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -fPIC -DPIC -o src/.libs/manualpicker.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -o src/preprocessing_mpi.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_entries.lo src/gui_entries.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -fPIC -DPIC -o src/.libs/gui_entries.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -o src/particle_sorter_mpi.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_jobwindow.lo src/gui_jobwindow.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -o src/particle_polisher.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_mainwindow.lo src/gui_mainwindow.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -fPIC -DPIC -o src/.libs/gui_jobwindow.o +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -fPIC -DPIC -o src/.libs/gui_mainwindow.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -o src/gui_entries.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -o src/particle_polisher_mpi.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/manualpicker.lo src/manualpicker.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -fPIC -DPIC -o src/.libs/manualpicker.o mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/reconstruct.o src/apps/reconstruct.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -o src/gui_mainwindow.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine.o src/apps/refine.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -o src/gui_mainwindow.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -o src/particle_polisher_mpi.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/postprocess.o src/apps/postprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick.o src/apps/autopick.cpp @@ -3085,21 +3119,20 @@ mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort.o src/apps/particle_sort.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind.o src/apps/run_ctffind.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/star_compare.o src/apps/star_compare.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -o src/ml_optimiser_mpi.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -o src/manualpicker.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/find_tiltpairs.o src/apps/find_tiltpairs.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/tiltpair_plot.o src/apps/tiltpair_plot.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine_mpi.o src/apps/refine_mpi.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -o src/ml_optimiser_mpi.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess_mpi.o src/apps/preprocess_mpi.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -o src/manualpicker.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick_mpi.o src/apps/autopick_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish_mpi.o src/apps/particle_polish_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort_mpi.o src/apps/particle_sort_mpi.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -o src/metadata_label.o >/dev/null 2>&1 -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -o src/displayer.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind_mpi.o src/apps/run_ctffind_mpi.cpp +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -o src/displayer.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/manualpick.o src/apps/manualpick.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/display.o src/apps/display.cpp -libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -o src/gui_jobwindow.o >/dev/null 2>&1 +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -o src/metadata_label.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/maingui.o src/apps/maingui.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/mask_create.o src/apps/mask_create.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/stack_create.o src/apps/stack_create.cpp @@ -3109,8 +3142,9 @@ ./src/displayer.h:327:2: warning: no return statement in function returning non-void [-Wreturn-type] } ^ +libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -o src/gui_jobwindow.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -o src/ml_optimiser.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -lfltk -lX11 -o librelion-1.4.la -rpath /usr/lib/x86_64-linux-gnu src/args.lo src/assembly.lo src/autopicker.lo src/backprojector.lo src/complex.lo src/ctf.lo src/ctffind_runner.lo src/error.lo src/euler.lo src/exp_model.lo src/fftw.lo src/filename.lo src/funcs.lo src/healpix_sampling.lo src/image.lo src/mask.lo src/matrix1d.lo src/matrix2d.lo src/memory.lo src/metadata_container.lo src/metadata_label.lo src/metadata_table.lo src/ml_model.lo src/ml_optimiser.lo src/multidim_array.lo src/numerical_recipes.lo src/parallel.lo src/particle_polisher.lo src/particle_sorter.lo src/postprocessing.lo src/preprocessing.lo src/projector.lo src/strings.lo src/symmetries.lo src/tabfuncs.lo src/time.lo src/transformations.lo src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/healpix_base.lo src/mpi.lo src/autopicker_mpi.lo src/ctffind_runner_mpi.lo src/particle_polisher_mpi.lo src/particle_sorter_mpi.lo src/preprocessing_mpi.lo src/ml_optimiser_mpi.lo src/displayer.lo src/gui_entries.lo src/gui_jobwindow.lo src/gui_mainwindow.lo src/manualpicker.lo -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -lfltk -lX11 -o librelion-1.4.la -rpath /usr/lib/x86_64-linux-gnu src/args.lo src/assembly.lo src/autopicker.lo src/backprojector.lo src/complex.lo src/ctf.lo src/ctffind_runner.lo src/error.lo src/euler.lo src/exp_model.lo src/fftw.lo src/filename.lo src/funcs.lo src/healpix_sampling.lo src/image.lo src/mask.lo src/matrix1d.lo src/matrix2d.lo src/memory.lo src/metadata_container.lo src/metadata_label.lo src/metadata_table.lo src/ml_model.lo src/ml_optimiser.lo src/multidim_array.lo src/numerical_recipes.lo src/parallel.lo src/particle_polisher.lo src/particle_sorter.lo src/postprocessing.lo src/preprocessing.lo src/projector.lo src/strings.lo src/symmetries.lo src/tabfuncs.lo src/time.lo src/transformations.lo src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/healpix_base.lo src/mpi.lo src/autopicker_mpi.lo src/ctffind_runner_mpi.lo src/particle_polisher_mpi.lo src/particle_sorter_mpi.lo src/preprocessing_mpi.lo src/ml_optimiser_mpi.lo src/displayer.lo src/gui_entries.lo src/gui_jobwindow.lo src/gui_mainwindow.lo src/manualpicker.lo -lfftw3_threads -lfftw3 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o src/.libs/args.o src/.libs/assembly.o src/.libs/autopicker.o src/.libs/backprojector.o src/.libs/complex.o src/.libs/ctf.o src/.libs/ctffind_runner.o src/.libs/error.o src/.libs/euler.o src/.libs/exp_model.o src/.libs/fftw.o src/.libs/filename.o src/.libs/funcs.o src/.libs/healpix_sampling.o src/.libs/image.o src/.libs/mask.o src/.libs/matrix1d.o src/.libs/matrix2d.o src/.libs/memory.o src/.libs/metadata_container.o src/.libs/metadata_label.o src/.libs/metadata_table.o src/.libs/ml_model.o src/.libs/ml_optimiser.o src/.libs/multidim_array.o src/.libs/numerical_recipes.o src/.libs/parallel.o src/.libs/particle_polisher.o src/.libs/particle_sorter.o src/.libs/postprocessing.o src/.libs/preprocessing.o src/.libs/projector.o src/.libs/strings.o src/.libs/symmetries.o src/.libs/tabfuncs.o src/.libs/time.o src/.libs/transformations.o src/Healpix_2.15a/.libs/cxxutils.o src/Healpix_2.15a/.libs/healpix_base.o src/.libs/mpi.o src/.libs/autopicker_mpi.o src/.libs/ctffind_runner_mpi.o src/.libs/particle_polisher_mpi.o src/.libs/particle_sorter_mpi.o src/.libs/preprocessing_mpi.o src/.libs/ml_optimiser_mpi.o src/.libs/displayer.o src/.libs/gui_entries.o src/.libs/gui_jobwindow.o src/.libs/gui_mainwindow.o src/.libs/manualpicker.o -lfltk -lX11 -lfftw3_threads -lfftw3 -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-soname -Wl,librelion-1.4.so.1 -o .libs/librelion-1.4.so.1.0.4 libtool: link: (cd ".libs" && rm -f "librelion-1.4.so.1" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so.1") libtool: link: (cd ".libs" && rm -f "librelion-1.4.so" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so") @@ -3118,53 +3152,53 @@ ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librelion-1.4.a libtool: link: ( cd ".libs" && rm -f "librelion-1.4.la" && ln -s "../librelion-1.4.la" "librelion-1.4.la" ) -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine_mpi src/apps/refine_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess_mpi src/apps/preprocess_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick_mpi src/apps/autopick_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/postprocess src/apps/postprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/project src/apps/project.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick_mpi src/apps/autopick_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine_mpi src/apps/refine_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess_mpi src/apps/preprocess_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick_mpi src/apps/autopick_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish_mpi src/apps/particle_polish_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/reconstruct src/apps/reconstruct.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind src/apps/run_ctffind.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/refine src/apps/refine.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess_mpi src/apps/preprocess_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort src/apps/particle_sort.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick src/apps/autopick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/find_tiltpairs src/apps/find_tiltpairs.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess src/apps/preprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/project src/apps/project.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_polish src/apps/particle_polish.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/star_compare src/apps/star_compare.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/postprocess src/apps/postprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/refine_mpi src/apps/refine_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick src/apps/autopick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/star_compare src/apps/star_compare.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick_mpi src/apps/autopick_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind src/apps/run_ctffind.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess_mpi src/apps/preprocess_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/tiltpair_plot src/apps/tiltpair_plot.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish_mpi src/apps/particle_polish_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort_mpi src/apps/particle_sort_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind_mpi src/apps/run_ctffind_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o manualpick src/apps/manualpick.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o display src/apps/display.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o maingui src/apps/maingui.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 -/bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/find_tiltpairs src/apps/find_tiltpairs.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort src/apps/particle_sort.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_polish_mpi src/apps/particle_polish_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort_mpi src/apps/particle_sort_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind_mpi src/apps/run_ctffind_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o manualpick src/apps/manualpick.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o display src/apps/display.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o maingui src/apps/maingui.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 +/bin/sh ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind_mpi src/apps/run_ctffind_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort_mpi src/apps/particle_sort_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/display src/apps/display.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/manualpick src/apps/manualpick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 +libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/maingui src/apps/maingui.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/mask_create src/apps/mask_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/stack_create src/apps/stack_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 -libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/maingui src/apps/maingui.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/image_handler src/apps/image_handler.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 make[1]: Leaving directory '/build/relion-1.4+dfsg' create-stamp debian/debhelper-build-stamp @@ -3207,61 +3241,44 @@ Relion most recent (current) lib interface = 1 # First for all packages apart from relion-bin* dh_shlibdeps -- -xrelion-bin -xrelion-bin+mpi -xrelion-bin+gui -xrelion-bin+mpi+gui -dpkg-shlibdeps: warning: symbol MPI_Comm_rank used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Type_create_resized used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Get_count used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Comm_set_name used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Allgather used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Type_create_indexed_block used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Type_get_name used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Info_get_valuelen used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Request_get_status used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Type_indexed used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol ompi_mpi_cxx_op_intercept used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Win_complete used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Gatherv used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Graph_neighbors_count used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Recv used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol pthread_join used by debian/librelion-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol pthread_create used by debian/librelion-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: 165 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: symbol MPI_Cart_coords used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Put used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Type_size used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Graph_get used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Comm_set_name used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Ssend used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Alltoall used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Group_range_excl used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Op_create used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries -dpkg-shlibdeps: warning: symbol MPI_Comm_set_attr used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Finalize used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Info_get_nkeys used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Initialized used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Error_class used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: 165 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 was not linked against libX11.so.6 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: symbol pthread_create used by debian/librelion-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol pthread_join used by debian/librelion-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_create used by debian/librelion+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_join used by debian/librelion+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librelion+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 was not linked against libX11.so.6 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_maingui contains an unresolvable reference to symbol _ZN16RelionMainWindowC1EiiPKc: it's probably a plugin -dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi contains an unresolvable reference to symbol _ZN13AutoPickerMpi3runEv: it's probably a plugin -dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin/usr/bin/relion_postprocess debian/relion-bin/usr/bin/relion_star_compare debian/relion-bin/usr/bin/relion_particle_polish debian/relion-bin/usr/bin/relion_tiltpair_plot debian/relion-bin/usr/bin/relion_preprocess debian/relion-bin/usr/bin/relion_project debian/relion-bin/usr/bin/relion_particle_sort debian/relion-bin/usr/bin/relion_run_ctffind debian/relion-bin/usr/bin/relion_refine debian/relion-bin/usr/bin/relion_mask_create debian/relion-bin/usr/bin/relion_autopick debian/relion-bin/usr/bin/relion_image_handler debian/relion-bin/usr/bin/relion_find_tiltpairs debian/relion-bin/usr/bin/relion_stack_create debian/relion-bin/usr/bin/relion_reconstruct were not linked against libfftw3.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin/usr/bin/relion_postprocess debian/relion-bin/usr/bin/relion_star_compare debian/relion-bin/usr/bin/relion_particle_polish debian/relion-bin/usr/bin/relion_tiltpair_plot debian/relion-bin/usr/bin/relion_preprocess debian/relion-bin/usr/bin/relion_project debian/relion-bin/usr/bin/relion_particle_sort debian/relion-bin/usr/bin/relion_run_ctffind debian/relion-bin/usr/bin/relion_refine debian/relion-bin/usr/bin/relion_mask_create debian/relion-bin/usr/bin/relion_autopick debian/relion-bin/usr/bin/relion_image_handler debian/relion-bin/usr/bin/relion_find_tiltpairs debian/relion-bin/usr/bin/relion_stack_create debian/relion-bin/usr/bin/relion_reconstruct were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi contains an unresolvable reference to symbol _ZN16PreprocessingMpi3runEv: it's probably a plugin -dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_manualpick contains an unresolvable reference to symbol _ZN12ManualPicker10initialiseEv: it's probably a plugin -dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi contains an unresolvable reference to symbol _ZN14MlOptimiserMpi4readEiPPc: it's probably a plugin -dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_particle_polish debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_manualpick debian/relion-bin+gui/usr/bin/relion_image_handler were not linked against libfftw3.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_particle_polish debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_manualpick debian/relion-bin+gui/usr/bin/relion_image_handler were not linked against libX11.so.6 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_particle_polish debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_manualpick debian/relion-bin+gui/usr/bin/relion_image_handler were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_display contains an unresolvable reference to symbol _ZN9Displayer10initialiseEv: it's probably a plugin -dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi contains an unresolvable reference to symbol _ZN19ParticlePolisherMpi3runEv: it's probably a plugin -dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi contains an unresolvable reference to symbol _ZN17ParticleSorterMpi3runEv: it's probably a plugin -dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi contains an unresolvable reference to symbol _ZN16CtffindRunnerMpi4readEiPPc: it's probably a plugin -dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_star_compare debian/relion-bin+mpi+gui/usr/bin/relion_preprocess debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi were not linked against libfftw3.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_star_compare debian/relion-bin+mpi+gui/usr/bin/relion_preprocess debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_star_compare debian/relion-bin+mpi+gui/usr/bin/relion_preprocess debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi were not linked against libX11.so.6 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi/usr/bin/relion_star_compare debian/relion-bin+mpi/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi/usr/bin/relion_stack_create debian/relion-bin+mpi/usr/bin/relion_refine debian/relion-bin+mpi/usr/bin/relion_refine_mpi debian/relion-bin+mpi/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi/usr/bin/relion_autopick_mpi debian/relion-bin+mpi/usr/bin/relion_postprocess debian/relion-bin+mpi/usr/bin/relion_autopick debian/relion-bin+mpi/usr/bin/relion_run_ctffind debian/relion-bin+mpi/usr/bin/relion_particle_polish debian/relion-bin+mpi/usr/bin/relion_particle_sort debian/relion-bin+mpi/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi/usr/bin/relion_reconstruct debian/relion-bin+mpi/usr/bin/relion_preprocess debian/relion-bin+mpi/usr/bin/relion_mask_create debian/relion-bin+mpi/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi/usr/bin/relion_project debian/relion-bin+mpi/usr/bin/relion_image_handler debian/relion-bin+mpi/usr/bin/relion_particle_polish_mpi were not linked against libfftw3.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi/usr/bin/relion_star_compare debian/relion-bin+mpi/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi/usr/bin/relion_stack_create debian/relion-bin+mpi/usr/bin/relion_refine debian/relion-bin+mpi/usr/bin/relion_refine_mpi debian/relion-bin+mpi/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi/usr/bin/relion_autopick_mpi debian/relion-bin+mpi/usr/bin/relion_postprocess debian/relion-bin+mpi/usr/bin/relion_autopick debian/relion-bin+mpi/usr/bin/relion_run_ctffind debian/relion-bin+mpi/usr/bin/relion_particle_polish debian/relion-bin+mpi/usr/bin/relion_particle_sort debian/relion-bin+mpi/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi/usr/bin/relion_reconstruct debian/relion-bin+mpi/usr/bin/relion_preprocess debian/relion-bin+mpi/usr/bin/relion_mask_create debian/relion-bin+mpi/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi/usr/bin/relion_project debian/relion-bin+mpi/usr/bin/relion_image_handler debian/relion-bin+mpi/usr/bin/relion_particle_polish_mpi were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: symbol MPI_Rsend used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Barrier used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Bsend used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Group_rank used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Recv_init used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol ompi_mpi_comm_world used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Test used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Type_commit used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Type_set_attr used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: symbol MPI_Group_range_excl used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries +dpkg-shlibdeps: warning: 165 other similar warnings have been skipped (use -v to see them all) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 was not linked against libX11.so.6 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin/usr/bin/relion_run_ctffind debian/relion-bin/usr/bin/relion_autopick debian/relion-bin/usr/bin/relion_particle_sort debian/relion-bin/usr/bin/relion_reconstruct debian/relion-bin/usr/bin/relion_stack_create debian/relion-bin/usr/bin/relion_postprocess debian/relion-bin/usr/bin/relion_project debian/relion-bin/usr/bin/relion_mask_create debian/relion-bin/usr/bin/relion_preprocess debian/relion-bin/usr/bin/relion_particle_polish debian/relion-bin/usr/bin/relion_refine debian/relion-bin/usr/bin/relion_find_tiltpairs debian/relion-bin/usr/bin/relion_image_handler debian/relion-bin/usr/bin/relion_star_compare debian/relion-bin/usr/bin/relion_tiltpair_plot were not linked against libfftw3.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin/usr/bin/relion_run_ctffind debian/relion-bin/usr/bin/relion_autopick debian/relion-bin/usr/bin/relion_particle_sort debian/relion-bin/usr/bin/relion_reconstruct debian/relion-bin/usr/bin/relion_stack_create debian/relion-bin/usr/bin/relion_postprocess debian/relion-bin/usr/bin/relion_project debian/relion-bin/usr/bin/relion_mask_create debian/relion-bin/usr/bin/relion_preprocess debian/relion-bin/usr/bin/relion_particle_polish debian/relion-bin/usr/bin/relion_refine debian/relion-bin/usr/bin/relion_find_tiltpairs debian/relion-bin/usr/bin/relion_image_handler debian/relion-bin/usr/bin/relion_star_compare debian/relion-bin/usr/bin/relion_tiltpair_plot were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_particle_polish debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_image_handler debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_manualpick debian/relion-bin+gui/usr/bin/relion_find_tiltpairs were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_particle_polish debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_image_handler debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_manualpick debian/relion-bin+gui/usr/bin/relion_find_tiltpairs were not linked against libfftw3.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_particle_polish debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_image_handler debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_manualpick debian/relion-bin+gui/usr/bin/relion_find_tiltpairs were not linked against libX11.so.6 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi/usr/bin/relion_reconstruct debian/relion-bin+mpi/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi/usr/bin/relion_project debian/relion-bin+mpi/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi/usr/bin/relion_particle_polish debian/relion-bin+mpi/usr/bin/relion_postprocess debian/relion-bin+mpi/usr/bin/relion_refine debian/relion-bin+mpi/usr/bin/relion_particle_sort debian/relion-bin+mpi/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi/usr/bin/relion_preprocess debian/relion-bin+mpi/usr/bin/relion_image_handler debian/relion-bin+mpi/usr/bin/relion_stack_create debian/relion-bin+mpi/usr/bin/relion_refine_mpi debian/relion-bin+mpi/usr/bin/relion_mask_create debian/relion-bin+mpi/usr/bin/relion_autopick_mpi debian/relion-bin+mpi/usr/bin/relion_star_compare debian/relion-bin+mpi/usr/bin/relion_autopick debian/relion-bin+mpi/usr/bin/relion_run_ctffind were not linked against libfftw3.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi/usr/bin/relion_reconstruct debian/relion-bin+mpi/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi/usr/bin/relion_project debian/relion-bin+mpi/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi/usr/bin/relion_particle_polish debian/relion-bin+mpi/usr/bin/relion_postprocess debian/relion-bin+mpi/usr/bin/relion_refine debian/relion-bin+mpi/usr/bin/relion_particle_sort debian/relion-bin+mpi/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi/usr/bin/relion_preprocess debian/relion-bin+mpi/usr/bin/relion_image_handler debian/relion-bin+mpi/usr/bin/relion_stack_create debian/relion-bin+mpi/usr/bin/relion_refine_mpi debian/relion-bin+mpi/usr/bin/relion_mask_create debian/relion-bin+mpi/usr/bin/relion_autopick_mpi debian/relion-bin+mpi/usr/bin/relion_star_compare debian/relion-bin+mpi/usr/bin/relion_autopick debian/relion-bin+mpi/usr/bin/relion_run_ctffind were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_preprocess debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_star_compare were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_preprocess debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_star_compare were not linked against libfftw3.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_preprocess debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_star_compare were not linked against libX11.so.6 (they use none of the library's symbols) # Now for the relion-bin* packages for pkg in relion-bin relion-bin+mpi relion-bin+gui relion-bin+mpi+gui ; do \ echo -e "\n-- Info: Run dpkg-shlibdeps for $pkg --\n"; \ @@ -3269,82 +3286,82 @@ -Sdebian/librelion${pkg#relion-bin}-1.4-1 \ -Tdebian/${pkg}.substvars; \ done --e + -- Info: Run dpkg-shlibdeps for relion-bin -- -dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_datablock_ctfdat' -dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_datablock_stack' -dpkg-shlibdeps: warning: binaries to analyze should already be installed in their package's directory dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_plottable' +dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_datablock_ctfdat' +dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_printtable' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_datablock_singlefiles' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_loopheader' -dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_printtable' -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin/usr/bin/relion_run_ctffind debian/relion-bin/usr/bin/relion_stack_create debian/relion-bin/usr/bin/relion_refine debian/relion-bin/usr/bin/relion_project debian/relion-bin/usr/bin/relion_particle_sort debian/relion-bin/usr/bin/relion_autopick debian/relion-bin/usr/bin/relion_mask_create debian/relion-bin/usr/bin/relion_particle_polish debian/relion-bin/usr/bin/relion_reconstruct debian/relion-bin/usr/bin/relion_find_tiltpairs debian/relion-bin/usr/bin/relion_tiltpair_plot debian/relion-bin/usr/bin/relion_image_handler debian/relion-bin/usr/bin/relion_postprocess debian/relion-bin/usr/bin/relion_preprocess debian/relion-bin/usr/bin/relion_star_compare were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin/usr/bin/relion_run_ctffind debian/relion-bin/usr/bin/relion_stack_create debian/relion-bin/usr/bin/relion_refine debian/relion-bin/usr/bin/relion_project debian/relion-bin/usr/bin/relion_particle_sort debian/relion-bin/usr/bin/relion_autopick debian/relion-bin/usr/bin/relion_mask_create debian/relion-bin/usr/bin/relion_particle_polish debian/relion-bin/usr/bin/relion_reconstruct debian/relion-bin/usr/bin/relion_find_tiltpairs debian/relion-bin/usr/bin/relion_tiltpair_plot debian/relion-bin/usr/bin/relion_image_handler debian/relion-bin/usr/bin/relion_postprocess debian/relion-bin/usr/bin/relion_preprocess debian/relion-bin/usr/bin/relion_star_compare were not linked against libfftw3.so.3 (they use none of the library's symbols) --e +dpkg-shlibdeps: warning: binaries to analyze should already be installed in their package's directory +dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_datablock_stack' +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin/usr/bin/relion_preprocess debian/relion-bin/usr/bin/relion_reconstruct debian/relion-bin/usr/bin/relion_tiltpair_plot debian/relion-bin/usr/bin/relion_particle_sort debian/relion-bin/usr/bin/relion_postprocess debian/relion-bin/usr/bin/relion_star_compare debian/relion-bin/usr/bin/relion_image_handler debian/relion-bin/usr/bin/relion_particle_polish debian/relion-bin/usr/bin/relion_run_ctffind debian/relion-bin/usr/bin/relion_stack_create debian/relion-bin/usr/bin/relion_project debian/relion-bin/usr/bin/relion_autopick debian/relion-bin/usr/bin/relion_find_tiltpairs debian/relion-bin/usr/bin/relion_refine debian/relion-bin/usr/bin/relion_mask_create were not linked against libfftw3.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin/usr/bin/relion_preprocess debian/relion-bin/usr/bin/relion_reconstruct debian/relion-bin/usr/bin/relion_tiltpair_plot debian/relion-bin/usr/bin/relion_particle_sort debian/relion-bin/usr/bin/relion_postprocess debian/relion-bin/usr/bin/relion_star_compare debian/relion-bin/usr/bin/relion_image_handler debian/relion-bin/usr/bin/relion_particle_polish debian/relion-bin/usr/bin/relion_run_ctffind debian/relion-bin/usr/bin/relion_stack_create debian/relion-bin/usr/bin/relion_project debian/relion-bin/usr/bin/relion_autopick debian/relion-bin/usr/bin/relion_find_tiltpairs debian/relion-bin/usr/bin/relion_refine debian/relion-bin/usr/bin/relion_mask_create were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) + -- Info: Run dpkg-shlibdeps for relion-bin+mpi -- +dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_loopheader' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_datablock_ctfdat' +dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_printtable' +dpkg-shlibdeps: warning: binaries to analyze should already be installed in their package's directory dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_datablock_stack' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_datablock_singlefiles' -dpkg-shlibdeps: warning: binaries to analyze should already be installed in their package's directory dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_plottable' -dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_loopheader' -dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_printtable' -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi/usr/bin/relion_run_ctffind debian/relion-bin+mpi/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi/usr/bin/relion_image_handler debian/relion-bin+mpi/usr/bin/relion_stack_create debian/relion-bin+mpi/usr/bin/relion_autopick_mpi debian/relion-bin+mpi/usr/bin/relion_mask_create debian/relion-bin+mpi/usr/bin/relion_particle_polish debian/relion-bin+mpi/usr/bin/relion_project debian/relion-bin+mpi/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi/usr/bin/relion_particle_sort debian/relion-bin+mpi/usr/bin/relion_star_compare debian/relion-bin+mpi/usr/bin/relion_refine debian/relion-bin+mpi/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi/usr/bin/relion_autopick debian/relion-bin+mpi/usr/bin/relion_preprocess debian/relion-bin+mpi/usr/bin/relion_refine_mpi debian/relion-bin+mpi/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi/usr/bin/relion_postprocess debian/relion-bin+mpi/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi/usr/bin/relion_reconstruct were not linked against libfftw3.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi/usr/bin/relion_run_ctffind debian/relion-bin+mpi/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi/usr/bin/relion_image_handler debian/relion-bin+mpi/usr/bin/relion_stack_create debian/relion-bin+mpi/usr/bin/relion_autopick_mpi debian/relion-bin+mpi/usr/bin/relion_mask_create debian/relion-bin+mpi/usr/bin/relion_particle_polish debian/relion-bin+mpi/usr/bin/relion_project debian/relion-bin+mpi/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi/usr/bin/relion_particle_sort debian/relion-bin+mpi/usr/bin/relion_star_compare debian/relion-bin+mpi/usr/bin/relion_refine debian/relion-bin+mpi/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi/usr/bin/relion_autopick debian/relion-bin+mpi/usr/bin/relion_preprocess debian/relion-bin+mpi/usr/bin/relion_refine_mpi debian/relion-bin+mpi/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi/usr/bin/relion_postprocess debian/relion-bin+mpi/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi/usr/bin/relion_reconstruct were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) --e +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi/usr/bin/relion_postprocess debian/relion-bin+mpi/usr/bin/relion_mask_create debian/relion-bin+mpi/usr/bin/relion_particle_sort debian/relion-bin+mpi/usr/bin/relion_image_handler debian/relion-bin+mpi/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi/usr/bin/relion_run_ctffind debian/relion-bin+mpi/usr/bin/relion_particle_polish debian/relion-bin+mpi/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi/usr/bin/relion_autopick debian/relion-bin+mpi/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi/usr/bin/relion_project debian/relion-bin+mpi/usr/bin/relion_stack_create debian/relion-bin+mpi/usr/bin/relion_preprocess debian/relion-bin+mpi/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi/usr/bin/relion_autopick_mpi debian/relion-bin+mpi/usr/bin/relion_refine_mpi debian/relion-bin+mpi/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi/usr/bin/relion_refine debian/relion-bin+mpi/usr/bin/relion_reconstruct debian/relion-bin+mpi/usr/bin/relion_star_compare were not linked against libfftw3.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi/usr/bin/relion_postprocess debian/relion-bin+mpi/usr/bin/relion_mask_create debian/relion-bin+mpi/usr/bin/relion_particle_sort debian/relion-bin+mpi/usr/bin/relion_image_handler debian/relion-bin+mpi/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi/usr/bin/relion_run_ctffind debian/relion-bin+mpi/usr/bin/relion_particle_polish debian/relion-bin+mpi/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi/usr/bin/relion_autopick debian/relion-bin+mpi/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi/usr/bin/relion_project debian/relion-bin+mpi/usr/bin/relion_stack_create debian/relion-bin+mpi/usr/bin/relion_preprocess debian/relion-bin+mpi/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi/usr/bin/relion_autopick_mpi debian/relion-bin+mpi/usr/bin/relion_refine_mpi debian/relion-bin+mpi/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi/usr/bin/relion_refine debian/relion-bin+mpi/usr/bin/relion_reconstruct debian/relion-bin+mpi/usr/bin/relion_star_compare were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) + -- Info: Run dpkg-shlibdeps for relion-bin+gui -- +dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_datablock_ctfdat' +dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_loopheader' +dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_datablock_singlefiles' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_printtable' -dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_datablock_stack' dpkg-shlibdeps: warning: binaries to analyze should already be installed in their package's directory -dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_datablock_ctfdat' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_plottable' -dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_datablock_singlefiles' -dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_loopheader' -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_manualpick debian/relion-bin+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_image_handler debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_particle_polish were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_manualpick debian/relion-bin+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_image_handler debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_particle_polish were not linked against libfftw3.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_manualpick debian/relion-bin+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_image_handler debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_particle_polish were not linked against libX11.so.6 (they use none of the library's symbols) --e +dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_datablock_stack' +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+gui/usr/bin/relion_particle_polish debian/relion-bin+gui/usr/bin/relion_image_handler debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_manualpick were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+gui/usr/bin/relion_particle_polish debian/relion-bin+gui/usr/bin/relion_image_handler debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_manualpick were not linked against libfftw3.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+gui/usr/bin/relion_particle_polish debian/relion-bin+gui/usr/bin/relion_image_handler debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_manualpick were not linked against libX11.so.6 (they use none of the library's symbols) + -- Info: Run dpkg-shlibdeps for relion-bin+mpi+gui -- -dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_datablock_singlefiles' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_datablock_ctfdat' -dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_plottable' -dpkg-shlibdeps: warning: binaries to analyze should already be installed in their package's directory +dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_datablock_singlefiles' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_printtable' -dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_loopheader' +dpkg-shlibdeps: warning: binaries to analyze should already be installed in their package's directory +dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_plottable' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_datablock_stack' -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_star_compare debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_preprocess debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi were not linked against libX11.so.6 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_star_compare debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_preprocess debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi were not linked against libfftw3.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_star_compare debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_preprocess debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_loopheader' +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_star_compare debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_preprocess were not linked against libfftw3.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_star_compare debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_preprocess were not linked against libX11.so.6 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_star_compare debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_preprocess were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) make[1]: Leaving directory '/build/relion-1.4+dfsg' dh_installdeb dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'librelion+mpi+gui-dev' in '../librelion+mpi+gui-dev_1.4+dfsg-4_amd64.deb'. +dpkg-deb: building package 'librelion-dev-common' in '../librelion-dev-common_1.4+dfsg-4_all.deb'. +dpkg-deb: building package 'librelion+mpi-dev' in '../librelion+mpi-dev_1.4+dfsg-4_amd64.deb'. +dpkg-deb: building package 'relion-bin+mpi+gui' in '../relion-bin+mpi+gui_1.4+dfsg-4_amd64.deb'. +dpkg-deb: building package 'librelion+gui-1.4-1-dbgsym' in '../librelion+gui-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'relion-bin' in '../relion-bin_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'relion-bin+mpi' in '../relion-bin+mpi_1.4+dfsg-4_amd64.deb'. -dpkg-deb: building package 'relion-bin+mpi+gui' in '../relion-bin+mpi+gui_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'relion-bin+gui' in '../relion-bin+gui_1.4+dfsg-4_amd64.deb'. -dpkg-deb: building package 'librelion+mpi-dev' in '../librelion+mpi-dev_1.4+dfsg-4_amd64.deb'. -dpkg-deb: building package 'librelion-dev-common' in '../librelion-dev-common_1.4+dfsg-4_all.deb'. -dpkg-deb: building package 'librelion+gui-1.4-1-dbgsym' in '../librelion+gui-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb'. +dpkg-deb: building package 'librelion+mpi+gui-1.4-1-dbgsym' in '../librelion+mpi+gui-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion-1.4-1-dbgsym' in '../librelion-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb'. +dpkg-deb: building package 'librelion+mpi+gui-dev' in '../librelion+mpi+gui-dev_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion+mpi-1.4-1-dbgsym' in '../librelion+mpi-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb'. -dpkg-deb: building package 'librelion+mpi+gui-1.4-1-dbgsym' in '../librelion+mpi+gui-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb'. +dpkg-deb: building package 'relion-bin+gui-dbgsym' in '../relion-bin+gui-dbgsym_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'relion-bin-dbgsym' in '../relion-bin-dbgsym_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion-dev' in '../librelion-dev_1.4+dfsg-4_amd64.deb'. -dpkg-deb: building package 'relion-bin+gui-dbgsym' in '../relion-bin+gui-dbgsym_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'relion-bin+mpi-dbgsym' in '../relion-bin+mpi-dbgsym_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'relion-bin+mpi+gui-dbgsym' in '../relion-bin+mpi+gui-dbgsym_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion+gui-dev' in '../librelion+gui-dev_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion-1.4-1' in '../librelion-1.4-1_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion+mpi-1.4-1' in '../librelion+mpi-1.4-1_1.4+dfsg-4_amd64.deb'. -dpkg-deb: building package 'librelion+mpi+gui-1.4-1' in '../librelion+mpi+gui-1.4-1_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion+gui-1.4-1' in '../librelion+gui-1.4-1_1.4+dfsg-4_amd64.deb'. +dpkg-deb: building package 'librelion+mpi+gui-1.4-1' in '../librelion+mpi+gui-1.4-1_1.4+dfsg-4_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../relion_1.4+dfsg-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3352,12 +3369,14 @@ dpkg-source: info: using options from relion-1.4+dfsg/debian/source/options: --compression=xz dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/18637/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/18637/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/41603 and its subdirectories -I: Current time: Fri Jul 16 23:31:56 -12 2021 -I: pbuilder-time-stamp: 1626521516 +I: removing directory /srv/workspace/pbuilder/18637 and its subdirectories +I: Current time: Sat Aug 20 08:17:07 +14 2022 +I: pbuilder-time-stamp: 1660933027