Diff of the two buildlogs: -- --- b1/build.log 2020-12-12 02:47:51.363674092 +0000 +++ b2/build.log 2020-12-12 02:53:17.529627495 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Dec 11 14:38:12 -12 2020 -I: pbuilder-time-stamp: 1607740692 +I: Current time: Fri Jan 14 23:11:00 +14 2022 +I: pbuilder-time-stamp: 1642151460 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Mon Jan 28 03:30:48 2019 -12 +gpgv: Signature made Tue Jan 29 05:30:48 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,136 +30,170 @@ dpkg-source: info: applying fix_path_interpreter I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/53159/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/62467/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/62467/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/62467/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='63fb04f078a648519dd52dd73850092f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='53159' - PS1='# ' - PS2='> ' + INVOCATION_ID=9e33e7fffd7e49a7b36a7f3c14a75f1b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=62467 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.dt0hO4qnTy/pbuilderrc_FWky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.dt0hO4qnTy/b1 --logfile b1/build.log obitools_1.2.12+dfsg-2.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.dt0hO4qnTy/pbuilderrc_JFyV --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.dt0hO4qnTy/b2 --logfile b2/build.log obitools_1.2.12+dfsg-2.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos1-amd64 4.19.0-13-amd64 #1 SMP Debian 4.19.160-2 (2020-11-28) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.9.0-0.bpo.2-amd64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Dec 6 20:26 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/53159/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jan 14 23:11 sh -> bash + lrwxrwxrwx 1 root root 4 Jan 10 04:47 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/62467/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -325,7 +359,7 @@ Get: 114 http://deb.debian.org/debian buster/main amd64 python-sphinx all 1.8.4-1 [482 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 python-virtualenv all 15.1.0+ds-2 [61.5 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 python-wheel all 0.32.3-2 [19.3 kB] -Fetched 75.8 MB in 3s (24.2 MB/s) +Fetched 75.8 MB in 1s (63.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -843,7 +877,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/obitools-1.2.12+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/obitools-1.2.12+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 1.2.12+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1574,40 +1608,40 @@ Store the raw script src/obisubset.py -> build/raw_scripts/obisubset.py copying src/obisubset.py -> build/raw_scripts copying and adjusting src/obisubset.py -> build/scripts-2.7 -changing mode of build/scripts-2.7/ecotag from 644 to 755 -changing mode of build/scripts-2.7/oligotag from 644 to 755 -changing mode of build/scripts-2.7/obiuniq from 644 to 755 -changing mode of build/scripts-2.7/obitaxonomy from 644 to 755 -changing mode of build/scripts-2.7/obitail from 644 to 755 -changing mode of build/scripts-2.7/obitab from 644 to 755 -changing mode of build/scripts-2.7/obistat from 644 to 755 -changing mode of build/scripts-2.7/obisplit from 644 to 755 -changing mode of build/scripts-2.7/obisort from 644 to 755 -changing mode of build/scripts-2.7/obisilva from 644 to 755 -changing mode of build/scripts-2.7/obiselect from 644 to 755 -changing mode of build/scripts-2.7/obisample from 644 to 755 -changing mode of build/scripts-2.7/obipr2 from 644 to 755 -changing mode of build/scripts-2.7/obijoinpairedend from 644 to 755 -changing mode of build/scripts-2.7/obihead from 644 to 755 -changing mode of build/scripts-2.7/obigrep from 644 to 755 -changing mode of build/scripts-2.7/obiextract from 644 to 755 -changing mode of build/scripts-2.7/obidistribute from 644 to 755 -changing mode of build/scripts-2.7/obicut from 644 to 755 -changing mode of build/scripts-2.7/obicount from 644 to 755 -changing mode of build/scripts-2.7/obiconvert from 644 to 755 -changing mode of build/scripts-2.7/obicomplement from 644 to 755 -changing mode of build/scripts-2.7/obiclean from 644 to 755 -changing mode of build/scripts-2.7/obiannotate from 644 to 755 -changing mode of build/scripts-2.7/obiaddtaxids from 644 to 755 -changing mode of build/scripts-2.7/ngsfilter from 644 to 755 -changing mode of build/scripts-2.7/illuminapairedend from 644 to 755 -changing mode of build/scripts-2.7/ecotaxstat from 644 to 755 -changing mode of build/scripts-2.7/ecotaxspecificity from 644 to 755 -changing mode of build/scripts-2.7/ecodbtaxstat from 644 to 755 -changing mode of build/scripts-2.7/ali2consensus from 644 to 755 -changing mode of build/scripts-2.7/extractreads2 from 644 to 755 -changing mode of build/scripts-2.7/extractreads from 644 to 755 -changing mode of build/scripts-2.7/obisubset from 644 to 755 +changing mode of build/scripts-2.7/ecotag from 664 to 775 +changing mode of build/scripts-2.7/oligotag from 664 to 775 +changing mode of build/scripts-2.7/obiuniq from 664 to 775 +changing mode of build/scripts-2.7/obitaxonomy from 664 to 775 +changing mode of build/scripts-2.7/obitail from 664 to 775 +changing mode of build/scripts-2.7/obitab from 664 to 775 +changing mode of build/scripts-2.7/obistat from 664 to 775 +changing mode of build/scripts-2.7/obisplit from 664 to 775 +changing mode of build/scripts-2.7/obisort from 664 to 775 +changing mode of build/scripts-2.7/obisilva from 664 to 775 +changing mode of build/scripts-2.7/obiselect from 664 to 775 +changing mode of build/scripts-2.7/obisample from 664 to 775 +changing mode of build/scripts-2.7/obipr2 from 664 to 775 +changing mode of build/scripts-2.7/obijoinpairedend from 664 to 775 +changing mode of build/scripts-2.7/obihead from 664 to 775 +changing mode of build/scripts-2.7/obigrep from 664 to 775 +changing mode of build/scripts-2.7/obiextract from 664 to 775 +changing mode of build/scripts-2.7/obidistribute from 664 to 775 +changing mode of build/scripts-2.7/obicut from 664 to 775 +changing mode of build/scripts-2.7/obicount from 664 to 775 +changing mode of build/scripts-2.7/obiconvert from 664 to 775 +changing mode of build/scripts-2.7/obicomplement from 664 to 775 +changing mode of build/scripts-2.7/obiclean from 664 to 775 +changing mode of build/scripts-2.7/obiannotate from 664 to 775 +changing mode of build/scripts-2.7/obiaddtaxids from 664 to 775 +changing mode of build/scripts-2.7/ngsfilter from 664 to 775 +changing mode of build/scripts-2.7/illuminapairedend from 664 to 775 +changing mode of build/scripts-2.7/ecotaxstat from 664 to 775 +changing mode of build/scripts-2.7/ecotaxspecificity from 664 to 775 +changing mode of build/scripts-2.7/ecodbtaxstat from 664 to 775 +changing mode of build/scripts-2.7/ali2consensus from 664 to 775 +changing mode of build/scripts-2.7/extractreads2 from 664 to 775 +changing mode of build/scripts-2.7/extractreads from 664 to 775 +changing mode of build/scripts-2.7/obisubset from 664 to 775 running build_sphinx Running Sphinx v1.8.4 making output directory... @@ -2811,40 +2845,40 @@ copying build/scripts-2.7/obiuniq -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/oligotag -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/ecotag -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obisubset to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/extractreads to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/extractreads2 to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ali2consensus to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ecodbtaxstat to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ecotaxspecificity to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ecotaxstat to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/illuminapairedend to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ngsfilter to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiaddtaxids to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiannotate to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiclean to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obicomplement to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiconvert to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obicount to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obicut to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obidistribute to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiextract to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obigrep to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obihead to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obijoinpairedend to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obipr2 to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obisample to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiselect to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obisilva to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obisort to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obisplit to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obistat to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obitab to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obitail to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obitaxonomy to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiuniq to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/oligotag to 755 -changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ecotag to 755 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obisubset to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/extractreads to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/extractreads2 to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ali2consensus to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ecodbtaxstat to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ecotaxspecificity to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ecotaxstat to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/illuminapairedend to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ngsfilter to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiaddtaxids to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiannotate to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiclean to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obicomplement to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiconvert to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obicount to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obicut to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obidistribute to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiextract to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obigrep to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obihead to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obijoinpairedend to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obipr2 to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obisample to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiselect to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obisilva to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obisort to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obisplit to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obistat to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obitab to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obitail to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obitaxonomy to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiuniq to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/oligotag to 775 +changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ecotag to 775 running install_egg_info Writing /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/OBITools-1.2.12.egg-info make[1]: Leaving directory '/build/obitools-1.2.12+dfsg' @@ -2931,7 +2965,7 @@ dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/obitools/usr/lib/python2.7/dist-packages/obitools/fastq/_fastq.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_freeendgapfm.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_nws.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_profilenws.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_assemble.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_dynamic.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/tools/_solexapairend.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_codonnws.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_rassemble.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/genericparser/_genericparser.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_freeendgap.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_lcs.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/word/_binary.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/fasta/_fasta.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/profile/_profile.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/options/_options.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/_obitools.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/word/_readindex.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_gprofilenws.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_upperbond.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/options/_bioseqfilter.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils/_utils.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/_format.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_nwsdnabyprot.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_qsassemble.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_qsrassemble.x86_64-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_assemble.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils/_utils.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_dynamic.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_freeendgap.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_rassemble.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/tools/_solexapairend.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/options/_bioseqfilter.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/options/_options.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/_obitools.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/fastq/_fastq.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_codonnws.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_nws.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/_format.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/fasta/_fasta.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_qsassemble.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_nwsdnabyprot.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_profilenws.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_gprofilenws.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/word/_readindex.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_freeendgapfm.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_lcs.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_upperbond.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/genericparser/_genericparser.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/word/_binary.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/profile/_profile.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_qsrassemble.x86_64-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package obitools: substitution variable ${python:Versions} unused, but is defined @@ -2948,12 +2982,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/62467/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/62467/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/53159 and its subdirectories -I: Current time: Fri Dec 11 14:47:50 -12 2020 -I: pbuilder-time-stamp: 1607741270 +I: removing directory /srv/workspace/pbuilder/62467 and its subdirectories +I: Current time: Fri Jan 14 23:16:24 +14 2022 +I: pbuilder-time-stamp: 1642151784