Diff of the two buildlogs: -- --- b1/build.log 2021-12-06 00:54:52.058157045 +0000 +++ b2/build.log 2021-12-06 01:09:39.379732036 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jan 7 19:10:34 -12 2023 -I: pbuilder-time-stamp: 1673161834 +I: Current time: Mon Dec 6 14:54:57 +14 2021 +I: pbuilder-time-stamp: 1638752097 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Tue Jan 22 07:41:16 2019 -12 +gpgv: Signature made Wed Jan 23 09:41:16 2019 +14 gpgv: using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./liggghts_3.8.0+repack1-4.dsc @@ -28,136 +28,170 @@ dpkg-source: info: applying 01_add_cmake_files.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2463516/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3077839/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3077839/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3077839/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='22ebf27bf3634614a4b7d5a634f7cad9' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2463516' - PS1='# ' - PS2='> ' + INVOCATION_ID=5513db77959a4d159d5fc4f3d4946d70 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3077839 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mmQVqFum1x/pbuilderrc_qSff --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mmQVqFum1x/b1 --logfile b1/build.log liggghts_3.8.0+repack1-4.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mmQVqFum1x/pbuilderrc_bxM4 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mmQVqFum1x/b2 --logfile b2/build.log liggghts_3.8.0+repack1-4.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos15-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Dec 10 16:20 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/2463516/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Dec 6 14:55 sh -> bash + lrwxrwxrwx 1 root root 4 Nov 8 11:58 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/3077839/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -731,7 +765,7 @@ Get: 520 http://deb.debian.org/debian buster/main amd64 tk-dev amd64 8.6.9+1 [5504 B] Get: 521 http://deb.debian.org/debian buster/main amd64 vtk6 amd64 6.3.0+dfsg2-2+b5 [188 kB] Get: 522 http://deb.debian.org/debian buster/main amd64 libvtk6-dev amd64 6.3.0+dfsg2-2+b5 [2149 kB] -Fetched 306 MB in 5s (65.1 MB/s) +Fetched 306 MB in 6s (52.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -2865,7 +2899,8 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/liggghts-3.8.0+repack1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../liggghts_3.8.0+repack1-4_source.changes +hostname: Name or service not known +I: Running cd /build/liggghts-3.8.0+repack1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../liggghts_3.8.0+repack1-4_source.changes dpkg-buildpackage: info: source package liggghts dpkg-buildpackage: info: source version 3.8.0+repack1-4 dpkg-buildpackage: info: source distribution unstable @@ -2936,7 +2971,7 @@ -- Build files have been written to: /build/liggghts-3.8.0+repack1/debian/build dh_auto_build -O--buildsystem=cmake -O--builddirectory=/build/liggghts-3.8.0\+repack1/debian/build - cd debian/build && make -j16 "INSTALL=install --strip-program=true" + cd debian/build && make -j15 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/liggghts-3.8.0+repack1/debian/build' /usr/bin/cmake -S/build/liggghts-3.8.0+repack1 -B/build/liggghts-3.8.0+repack1/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/liggghts-3.8.0+repack1/debian/build/CMakeFiles /build/liggghts-3.8.0+repack1/debian/build/CMakeFiles/progress.marks @@ -2964,38 +2999,36 @@ make[3]: Leaving directory '/build/liggghts-3.8.0+repack1/debian/build' make -f src/CMakeFiles/libliggghts.dir/build.make src/CMakeFiles/libliggghts.dir/build make[3]: Entering directory '/build/liggghts-3.8.0+repack1/debian/build' -[ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_map.cpp.o -[ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/angle.cpp.o +[ 0%] Building CXX object src/CMakeFiles/libliggghts.dir/angle.cpp.o +[ 0%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec.cpp.o +[ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_charge.cpp.o +[ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/atom.cpp.o [ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/angle_hybrid.cpp.o -[ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_ellipsoid.cpp.o -[ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_hybrid.cpp.o -[ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom.cpp.o +[ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_map.cpp.o +[ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_atomic.cpp.o +[ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_ellipsoid.cpp.o [ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_full.cpp.o -[ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec.cpp.o -[ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_charge.cpp.o -[ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_line.cpp.o -[ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_atomic.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/angle.cpp.o -c /build/liggghts-3.8.0+repack1/src/angle.cpp -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_ellipsoid.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_ellipsoid.cpp -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_map.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_map.cpp cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/angle_hybrid.cpp.o -c /build/liggghts-3.8.0+repack1/src/angle_hybrid.cpp cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom.cpp +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_map.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_map.cpp +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec.cpp cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_atomic.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_atomic.cpp cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_charge.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_charge.cpp +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_ellipsoid.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_ellipsoid.cpp +[ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_hybrid.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_full.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_full.cpp cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_hybrid.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_hybrid.cpp -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec.cpp +[ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_line.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_line.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_line.cpp -[ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_molecular.cpp.o [ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sph.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_molecular.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_molecular.cpp +[ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_molecular.cpp.o [ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sph_var.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_molecular.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_molecular.cpp cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_sph.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_sph.cpp -[ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sphere.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_sph_var.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_sph_var.cpp +[ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sphere.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_sphere.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_sphere.cpp -[ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sphere_w.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_sphere_w.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_sphere_w.cpp /build/liggghts-3.8.0+repack1/src/angle_hybrid.cpp: In member function 'virtual void LAMMPS_NS::AngleHybrid::read_restart(FILE*)': /build/liggghts-3.8.0+repack1/src/angle_hybrid.cpp:363:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); @@ -3006,6 +3039,8 @@ /build/liggghts-3.8.0+repack1/src/angle_hybrid.cpp:375:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sphere_w.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_sphere_w.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_sphere_w.cpp [ 5%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_superquadric.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_superquadric.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_superquadric.cpp [ 5%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_tri.cpp.o @@ -3024,10 +3059,26 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/cfd_datacoupling_file.cpp.o -c /build/liggghts-3.8.0+repack1/src/cfd_datacoupling_file.cpp [ 7%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_datacoupling_mpi.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/cfd_datacoupling_mpi.cpp.o -c /build/liggghts-3.8.0+repack1/src/cfd_datacoupling_mpi.cpp +/build/liggghts-3.8.0+repack1/src/bond_hybrid.cpp: In member function 'virtual void LAMMPS_NS::BondHybrid::read_restart(FILE*)': +/build/liggghts-3.8.0+repack1/src/bond_hybrid.cpp:351:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&nstyles,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/liggghts-3.8.0+repack1/src/bond_hybrid.cpp:360:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&n,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~ +/build/liggghts-3.8.0+repack1/src/bond_hybrid.cpp:363:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(keywords[m],sizeof(char),n,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_regionmodel_none.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/cfd_regionmodel_none.cpp.o -c /build/liggghts-3.8.0+repack1/src/cfd_regionmodel_none.cpp [ 8%] Building CXX object src/CMakeFiles/libliggghts.dir/change_box.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/change_box.cpp.o -c /build/liggghts-3.8.0+repack1/src/change_box.cpp +[ 8%] Building CXX object src/CMakeFiles/libliggghts.dir/citeme.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/citeme.cpp.o -c /build/liggghts-3.8.0+repack1/src/citeme.cpp +[ 9%] Building CXX object src/CMakeFiles/libliggghts.dir/comm.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/comm.cpp.o -c /build/liggghts-3.8.0+repack1/src/comm.cpp +[ 9%] Building CXX object src/CMakeFiles/libliggghts.dir/compute.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/compute.cpp.o -c /build/liggghts-3.8.0+repack1/src/compute.cpp /build/liggghts-3.8.0+repack1/src/bond_harmonic.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonic::read_restart(FILE*)': /build/liggghts-3.8.0+repack1/src/bond_harmonic.cpp:200:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); @@ -3035,22 +3086,6 @@ /build/liggghts-3.8.0+repack1/src/bond_harmonic.cpp:201:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 8%] Building CXX object src/CMakeFiles/libliggghts.dir/citeme.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/citeme.cpp.o -c /build/liggghts-3.8.0+repack1/src/citeme.cpp -[ 9%] Building CXX object src/CMakeFiles/libliggghts.dir/comm.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/comm.cpp.o -c /build/liggghts-3.8.0+repack1/src/comm.cpp -[ 9%] Building CXX object src/CMakeFiles/libliggghts.dir/compute.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/compute.cpp.o -c /build/liggghts-3.8.0+repack1/src/compute.cpp -/build/liggghts-3.8.0+repack1/src/bond_hybrid.cpp: In member function 'virtual void LAMMPS_NS::BondHybrid::read_restart(FILE*)': -/build/liggghts-3.8.0+repack1/src/bond_hybrid.cpp:351:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&nstyles,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/liggghts-3.8.0+repack1/src/bond_hybrid.cpp:360:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&n,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~ -/build/liggghts-3.8.0+repack1/src/bond_hybrid.cpp:363:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(keywords[m],sizeof(char),n,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_atom_molecule.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/compute_atom_molecule.cpp.o -c /build/liggghts-3.8.0+repack1/src/compute_atom_molecule.cpp [ 9%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_bond_local.cpp.o @@ -3074,8 +3109,8 @@ [ 12%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_displace_atom.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/compute_displace_atom.cpp.o -c /build/liggghts-3.8.0+repack1/src/compute_displace_atom.cpp [ 13%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_erotate.cpp.o -[ 13%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_erotate_asphere.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/compute_erotate.cpp.o -c /build/liggghts-3.8.0+repack1/src/compute_erotate.cpp +[ 13%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_erotate_asphere.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/compute_erotate_asphere.cpp.o -c /build/liggghts-3.8.0+repack1/src/compute_erotate_asphere.cpp [ 13%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_erotate_multisphere.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/compute_erotate_multisphere.cpp.o -c /build/liggghts-3.8.0+repack1/src/compute_erotate_multisphere.cpp @@ -3137,12 +3172,12 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/contact_models.cpp.o -c /build/liggghts-3.8.0+repack1/src/contact_models.cpp [ 22%] Building CXX object src/CMakeFiles/libliggghts.dir/container_base.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/container_base.cpp.o -c /build/liggghts-3.8.0+repack1/src/container_base.cpp -[ 22%] Building CXX object src/CMakeFiles/libliggghts.dir/create_atoms.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/create_atoms.cpp.o -c /build/liggghts-3.8.0+repack1/src/create_atoms.cpp -[ 22%] Building CXX object src/CMakeFiles/libliggghts.dir/custom_value_tracker.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/custom_value_tracker.cpp.o -c /build/liggghts-3.8.0+repack1/src/custom_value_tracker.cpp [ 23%] Building CXX object src/CMakeFiles/libliggghts.dir/create_box.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/create_box.cpp.o -c /build/liggghts-3.8.0+repack1/src/create_box.cpp +[ 23%] Building CXX object src/CMakeFiles/libliggghts.dir/create_atoms.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/create_atoms.cpp.o -c /build/liggghts-3.8.0+repack1/src/create_atoms.cpp +[ 23%] Building CXX object src/CMakeFiles/libliggghts.dir/custom_value_tracker.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/custom_value_tracker.cpp.o -c /build/liggghts-3.8.0+repack1/src/custom_value_tracker.cpp [ 23%] Building CXX object src/CMakeFiles/libliggghts.dir/delete_atoms.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/delete_atoms.cpp.o -c /build/liggghts-3.8.0+repack1/src/delete_atoms.cpp [ 24%] Building CXX object src/CMakeFiles/libliggghts.dir/delete_bonds.cpp.o @@ -3165,8 +3200,6 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_custom_vtk.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_custom_vtk.cpp [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_custom_vtm.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_custom_vtm.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_custom_vtm.cpp -[ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_decomposition_vtk.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_decomposition_vtk.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_decomposition_vtk.cpp /build/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp: In member function 'virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)': /build/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp:352:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); @@ -3177,6 +3210,8 @@ /build/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp:364:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_decomposition_vtk.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_decomposition_vtk.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_decomposition_vtk.cpp [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_euler_vtk.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_euler_vtk.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_euler_vtk.cpp [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_image.cpp.o @@ -3237,34 +3272,34 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_adapt.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_adapt.cpp [ 32%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_addforce.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_addforce.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_addforce.cpp -[ 32%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_correlate.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_correlate.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_ave_correlate.cpp [ 33%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_atom.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_atom.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_ave_atom.cpp +[ 33%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_correlate.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_correlate.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_ave_correlate.cpp [ 33%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_euler.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_euler.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_ave_euler.cpp [ 34%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_histo.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_histo.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_ave_histo.cpp +[ 34%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_spatial.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_spatial.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_ave_spatial.cpp /build/liggghts-3.8.0+repack1/src/fix_ave_correlate.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()': /build/liggghts-3.8.0+repack1/src/fix_ave_correlate.cpp:520:16: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -[ 34%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_spatial.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_spatial.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_ave_spatial.cpp [ 34%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_time.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_time.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_ave_time.cpp +[ 35%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_aveforce.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_aveforce.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_aveforce.cpp /build/liggghts-3.8.0+repack1/src/fix_ave_histo.cpp: In member function 'virtual void LAMMPS_NS::FixAveHisto::end_of_step()': /build/liggghts-3.8.0+repack1/src/fix_ave_histo.cpp:848:16: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +[ 35%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_base_liggghts.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_base_liggghts.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_base_liggghts.cpp /build/liggghts-3.8.0+repack1/src/fix_ave_spatial.cpp: In member function 'virtual void LAMMPS_NS::FixAveSpatial::end_of_step()': /build/liggghts-3.8.0+repack1/src/fix_ave_spatial.cpp:917:16: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -[ 35%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_aveforce.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_aveforce.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_aveforce.cpp -[ 35%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_base_liggghts.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_base_liggghts.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_base_liggghts.cpp [ 35%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_box_relax.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_box_relax.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_box_relax.cpp [ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_buoyancy.cpp.o @@ -3273,22 +3308,23 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_cfd_coupling.cpp [ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection.cpp -/build/liggghts-3.8.0+repack1/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)': -/build/liggghts-3.8.0+repack1/src/fix_ave_time.cpp:670:16: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] - ftruncate(fileno(fp),fileend); - ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_impl.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_impl.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_impl.cpp [ 37%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_species.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_species.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp [ 37%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_force.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_force.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_cfd_coupling_force.cpp +/build/liggghts-3.8.0+repack1/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)': +/build/liggghts-3.8.0+repack1/src/fix_ave_time.cpp:670:16: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] + ftruncate(fileno(fp),fileend); + ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 37%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_force_implicit.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_force_implicit.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_cfd_coupling_force_implicit.cpp [ 38%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_check_timestep_gran.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_check_timestep_gran.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_check_timestep_gran.cpp [ 38%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_check_timestep_sph.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_check_timestep_sph.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_check_timestep_sph.cpp +[ 38%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_history.cpp.o /build/liggghts-3.8.0+repack1/src/fix_check_timestep_sph.cpp:63: warning: "BIG" redefined #define BIG 1000000. @@ -3302,12 +3338,13 @@ /build/liggghts-3.8.0+repack1/src/domain_definitions.h:60: note: this is the location of the previous definition #define BIG 1.0e20 -[ 38%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_history.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_history.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_contact_history.cpp [ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_history_mesh.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_history_mesh.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_contact_history_mesh.cpp [ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_property_atom.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_property_atom.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_contact_property_atom.cpp +[ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_property_atom_wall.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_property_atom_wall.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_contact_property_atom_wall.cpp /build/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp: In constructor 'LAMMPS_NS::FixCfdCouplingConvectionSpecies::FixCfdCouplingConvectionSpecies(LAMMPS_NS::LAMMPS*, int, char**)': /build/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:75:37: warning: 'Source' directive writing 6 bytes into a region of size between 1 and 128 [-Wformat-overflow=] sprintf(sourceName_, "%sSource",speciesName_); @@ -3447,8 +3484,6 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_property_atom_wall.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_property_atom_wall.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_contact_property_atom_wall.cpp [ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_continuum_weighted.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_continuum_weighted.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_continuum_weighted.cpp [ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_deform.cpp.o @@ -3572,8 +3607,8 @@ [ 58%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_sph_density_corr.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_sph_density_corr.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_sph_density_corr.cpp [ 59%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_sph_density_summation.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_sph_density_summation.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_sph_density_summation.cpp [ 59%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_sph_pressure.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_sph_density_summation.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_sph_density_summation.cpp cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_sph_pressure.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_sph_pressure.cpp [ 59%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_spring.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_spring.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_spring.cpp @@ -3603,10 +3638,10 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_wall_gran.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_wall_gran.cpp [ 63%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_wall_region.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_wall_region.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_wall_region.cpp -[ 63%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_wall_region_sph.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_wall_region_sph.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_wall_region_sph.cpp [ 64%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_wall_sph.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_wall_sph.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_wall_sph.cpp +[ 64%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_wall_region_sph.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_wall_region_sph.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_wall_region_sph.cpp [ 64%] Building CXX object src/CMakeFiles/libliggghts.dir/force.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/force.cpp.o -c /build/liggghts-3.8.0+repack1/src/force.cpp [ 64%] Building CXX object src/CMakeFiles/libliggghts.dir/global_properties.cpp.o @@ -3623,6 +3658,16 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/improper.cpp.o -c /build/liggghts-3.8.0+repack1/src/improper.cpp [ 66%] Building CXX object src/CMakeFiles/libliggghts.dir/improper_hybrid.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/improper_hybrid.cpp.o -c /build/liggghts-3.8.0+repack1/src/improper_hybrid.cpp +/build/liggghts-3.8.0+repack1/src/group.cpp: In member function 'void LAMMPS_NS::Group::read_restart(FILE*)': +/build/liggghts-3.8.0+repack1/src/group.cpp:569:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&ngroup,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/liggghts-3.8.0+repack1/src/group.cpp:581:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&n,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~ +/build/liggghts-3.8.0+repack1/src/group.cpp:585:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(names[i],sizeof(char),n,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/libliggghts.dir/info.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/info.cpp.o -c /build/liggghts-3.8.0+repack1/src/info.cpp [ 67%] Building CXX object src/CMakeFiles/libliggghts.dir/input.cpp.o @@ -3637,18 +3682,6 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/integrate.cpp.o -c /build/liggghts-3.8.0+repack1/src/integrate.cpp [ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/irregular.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/irregular.cpp.o -c /build/liggghts-3.8.0+repack1/src/irregular.cpp -/build/liggghts-3.8.0+repack1/src/group.cpp: In member function 'void LAMMPS_NS::Group::read_restart(FILE*)': -/build/liggghts-3.8.0+repack1/src/group.cpp:569:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&ngroup,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/liggghts-3.8.0+repack1/src/group.cpp:581:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&n,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~ -/build/liggghts-3.8.0+repack1/src/group.cpp:585:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(names[i],sizeof(char),n,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/kspace.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/kspace.cpp.o -c /build/liggghts-3.8.0+repack1/src/kspace.cpp /build/liggghts-3.8.0+repack1/src/improper_hybrid.cpp: In member function 'virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)': /build/liggghts-3.8.0+repack1/src/improper_hybrid.cpp:340:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); @@ -3666,6 +3699,8 @@ /build/liggghts-3.8.0+repack1/src/input.cpp:1170:24: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) system(work); ~~~~~~^~~~~~ +[ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/kspace.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/kspace.cpp.o -c /build/liggghts-3.8.0+repack1/src/kspace.cpp [ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/lammps.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/lammps.cpp.o -c /build/liggghts-3.8.0+repack1/src/lammps.cpp [ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/lattice.cpp.o @@ -3690,10 +3725,6 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/mesh_module_stress.cpp.o -c /build/liggghts-3.8.0+repack1/src/mesh_module_stress.cpp [ 72%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_module_stress_servo.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/mesh_module_stress_servo.cpp.o -c /build/liggghts-3.8.0+repack1/src/mesh_module_stress_servo.cpp -[ 73%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_mover_linear.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/mesh_mover_linear.cpp.o -c /build/liggghts-3.8.0+repack1/src/mesh_mover_linear.cpp -[ 73%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_mover_rotation.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/mesh_mover_rotation.cpp.o -c /build/liggghts-3.8.0+repack1/src/mesh_mover_rotation.cpp /build/liggghts-3.8.0+repack1/src/mesh_module_stress_servo.cpp:67: warning: "BIG" redefined #define BIG 1000000. @@ -3708,14 +3739,18 @@ /build/liggghts-3.8.0+repack1/src/domain_definitions.h:60: note: this is the location of the previous definition #define BIG 1.0e20 +[ 73%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_mover_linear.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/mesh_mover_linear.cpp.o -c /build/liggghts-3.8.0+repack1/src/mesh_mover_linear.cpp +[ 73%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_mover_rotation.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/mesh_mover_rotation.cpp.o -c /build/liggghts-3.8.0+repack1/src/mesh_mover_rotation.cpp [ 73%] Building CXX object src/CMakeFiles/libliggghts.dir/min.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/min.cpp.o -c /build/liggghts-3.8.0+repack1/src/min.cpp [ 74%] Building CXX object src/CMakeFiles/libliggghts.dir/min_cg.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/min_cg.cpp.o -c /build/liggghts-3.8.0+repack1/src/min_cg.cpp -[ 74%] Building CXX object src/CMakeFiles/libliggghts.dir/minimize.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/minimize.cpp.o -c /build/liggghts-3.8.0+repack1/src/minimize.cpp [ 74%] Building CXX object src/CMakeFiles/libliggghts.dir/min_linesearch.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/min_linesearch.cpp.o -c /build/liggghts-3.8.0+repack1/src/min_linesearch.cpp +[ 74%] Building CXX object src/CMakeFiles/libliggghts.dir/minimize.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/minimize.cpp.o -c /build/liggghts-3.8.0+repack1/src/minimize.cpp [ 75%] Building CXX object src/CMakeFiles/libliggghts.dir/modified_andrew.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/modified_andrew.cpp.o -c /build/liggghts-3.8.0+repack1/src/modified_andrew.cpp [ 75%] Building CXX object src/CMakeFiles/libliggghts.dir/modify.cpp.o @@ -3730,6 +3765,14 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_bond.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_bond.cpp [ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_derive.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_derive.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_derive.cpp +[ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_dummy.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_dummy.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_dummy.cpp +[ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_full.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_full.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_full.cpp +[ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_gran.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_gran.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_gran.cpp +[ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_bin.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_half_bin.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_half_bin.cpp /build/liggghts-3.8.0+repack1/src/modify.cpp: In member function 'int LAMMPS_NS::Modify::read_restart(FILE*)': /build/liggghts-3.8.0+repack1/src/modify.cpp:1197:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nfix_restart_global,sizeof(int),1,fp); @@ -3770,20 +3813,18 @@ /build/liggghts-3.8.0+repack1/src/modify.cpp:1264:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ -[ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_dummy.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_dummy.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_dummy.cpp -[ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_full.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_full.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_full.cpp -[ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_gran.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_gran.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_gran.cpp -[ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_bin.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_half_bin.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_half_bin.cpp [ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_multi.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_half_multi.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_half_multi.cpp [ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_nsq.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_half_nsq.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_half_nsq.cpp [ 79%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_list.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_list.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_list.cpp +[ 79%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_request.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_request.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_request.cpp +[ 79%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_respa.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_respa.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_respa.cpp +[ 80%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_stencil.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_stencil.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_stencil.cpp In file included from /build/liggghts-3.8.0+repack1/src/pair_gran_base.h:63, from /build/liggghts-3.8.0+repack1/src/granular_styles.h:81, from /build/liggghts-3.8.0+repack1/src/lammps.cpp:87: @@ -3793,12 +3834,6 @@ ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-3.8.0+repack1/src/os_specific.h: In function 'T* aligned_malloc(size_t) [with T = LIGGGHTS::ContactModels::ForceData]': /build/liggghts-3.8.0+repack1/src/os_specific.h:80:17: warning: ignoring return value of 'int posix_memalign(void**, size_t, size_t)', declared with attribute warn_unused_result [-Wunused-result] -[ 79%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_request.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_request.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_request.cpp -[ 79%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_respa.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_respa.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_respa.cpp -[ 80%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_stencil.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_stencil.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_stencil.cpp [ 80%] Building CXX object src/CMakeFiles/libliggghts.dir/neighbor.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neighbor.cpp.o -c /build/liggghts-3.8.0+repack1/src/neighbor.cpp [ 80%] Building CXX object src/CMakeFiles/libliggghts.dir/output.cpp.o @@ -3807,22 +3842,34 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair.cpp [ 81%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_gran.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_gran.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_gran.cpp -[ 81%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_hybrid.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_hybrid.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_hybrid.cpp [ 81%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_gran_proxy.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_gran_proxy.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp +[ 81%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_hybrid.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_hybrid.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_hybrid.cpp [ 82%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_hybrid_overlay.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_hybrid_overlay.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_hybrid_overlay.cpp [ 82%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_line_lj.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_line_lj.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_line_lj.cpp [ 82%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_soft.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_soft.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_soft.cpp +/build/liggghts-3.8.0+repack1/src/pair_gran.cpp: In member function 'virtual void LAMMPS_NS::PairGran::read_restart(FILE*, int, int)': +/build/liggghts-3.8.0+repack1/src/pair_gran.cpp:763:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_sph.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_sph.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_sph.cpp +/build/liggghts-3.8.0+repack1/src/pair_hybrid.cpp: In member function 'virtual void LAMMPS_NS::PairHybrid::read_restart(FILE*, int, int)': +/build/liggghts-3.8.0+repack1/src/pair_hybrid.cpp:660:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&nstyles,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/liggghts-3.8.0+repack1/src/pair_hybrid.cpp:674:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&n,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~ +/build/liggghts-3.8.0+repack1/src/pair_hybrid.cpp:677:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(keywords[m],sizeof(char),n,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_sph_artvisc_tenscorr.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_sph_artvisc_tenscorr.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp -[ 83%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsert.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/particleToInsert.cpp.o -c /build/liggghts-3.8.0+repack1/src/particleToInsert.cpp /build/liggghts-3.8.0+repack1/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart(FILE*, int, int)': /build/liggghts-3.8.0+repack1/src/pair_soft.cpp:282:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -3840,20 +3887,16 @@ /build/liggghts-3.8.0+repack1/src/pair_soft.cpp:313:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/liggghts-3.8.0+repack1/src/pair_gran.cpp: In member function 'virtual void LAMMPS_NS::PairGran::read_restart(FILE*, int, int)': -/build/liggghts-3.8.0+repack1/src/pair_gran.cpp:763:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/liggghts-3.8.0+repack1/src/pair_hybrid.cpp: In member function 'virtual void LAMMPS_NS::PairHybrid::read_restart(FILE*, int, int)': -/build/liggghts-3.8.0+repack1/src/pair_hybrid.cpp:660:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&nstyles,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/liggghts-3.8.0+repack1/src/pair_hybrid.cpp:674:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&n,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~ -/build/liggghts-3.8.0+repack1/src/pair_hybrid.cpp:677:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(keywords[m],sizeof(char),n,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsertSuperquadric.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/particleToInsertSuperquadric.cpp.o -c /build/liggghts-3.8.0+repack1/src/particleToInsertSuperquadric.cpp +[ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsert.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/particleToInsert.cpp.o -c /build/liggghts-3.8.0+repack1/src/particleToInsert.cpp +/build/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp: In member function 'virtual void LAMMPS_NS::PairGranProxy::read_restart_settings(FILE*, int, int)': +/build/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp:99:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&selected, sizeof(int64_t), 1, fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsert_multisphere.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/particleToInsert_multisphere.cpp.o -c /build/liggghts-3.8.0+repack1/src/particleToInsert_multisphere.cpp /build/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp: In member function 'virtual void LAMMPS_NS::PairSphArtviscTenscorr::read_restart(FILE*, int, int)': /build/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp:300:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -3865,16 +3908,8 @@ /build/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp:323:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tensCorr_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsertSuperquadric.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/particleToInsertSuperquadric.cpp.o -c /build/liggghts-3.8.0+repack1/src/particleToInsertSuperquadric.cpp -[ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsert_multisphere.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/particleToInsert_multisphere.cpp.o -c /build/liggghts-3.8.0+repack1/src/particleToInsert_multisphere.cpp [ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/procmap.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/procmap.cpp.o -c /build/liggghts-3.8.0+repack1/src/procmap.cpp -/build/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp: In member function 'virtual void LAMMPS_NS::PairGranProxy::read_restart_settings(FILE*, int, int)': -/build/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp:99:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&selected, sizeof(int64_t), 1, fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/libliggghts.dir/properties.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/properties.cpp.o -c /build/liggghts-3.8.0+repack1/src/properties.cpp [ 85%] Building CXX object src/CMakeFiles/libliggghts.dir/property_registry.cpp.o @@ -3897,6 +3932,8 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/reader_native.cpp.o -c /build/liggghts-3.8.0+repack1/src/reader_native.cpp [ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/reader_xyz.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/reader_xyz.cpp.o -c /build/liggghts-3.8.0+repack1/src/reader_xyz.cpp +[ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/region.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/region.cpp.o -c /build/liggghts-3.8.0+repack1/src/region.cpp /build/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::nread_int(int*, int, FILE*)': /build/liggghts-3.8.0+repack1/src/read_restart.cpp:863:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(buf,sizeof(int),n,fp); @@ -3928,8 +3965,6 @@ /build/liggghts-3.8.0+repack1/src/read_restart.cpp:948:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&value,sizeof(bigint),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/region.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/region.cpp.o -c /build/liggghts-3.8.0+repack1/src/region.cpp [ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/region_block.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/region_block.cpp.o -c /build/liggghts-3.8.0+repack1/src/region_block.cpp [ 89%] Building CXX object src/CMakeFiles/libliggghts.dir/region_cone.cpp.o @@ -3966,12 +4001,6 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/set.cpp.o -c /build/liggghts-3.8.0+repack1/src/set.cpp [ 94%] Building CXX object src/CMakeFiles/libliggghts.dir/signal_handling.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/signal_handling.cpp.o -c /build/liggghts-3.8.0+repack1/src/signal_handling.cpp -[ 94%] Building CXX object src/CMakeFiles/libliggghts.dir/sort_buffer.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/sort_buffer.cpp.o -c /build/liggghts-3.8.0+repack1/src/sort_buffer.cpp -[ 94%] Building CXX object src/CMakeFiles/libliggghts.dir/special.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/special.cpp.o -c /build/liggghts-3.8.0+repack1/src/special.cpp -[ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/superquadric.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/superquadric.cpp.o -c /build/liggghts-3.8.0+repack1/src/superquadric.cpp /build/liggghts-3.8.0+repack1/src/signal_handling.cpp: In function 'void LAMMPS_NS::SignalHandler::int_handler(int)': /build/liggghts-3.8.0+repack1/src/signal_handling.cpp:65:18: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write(STDOUT_FILENO, warning.c_str(), len); @@ -3986,6 +4015,12 @@ /build/liggghts-3.8.0+repack1/src/signal_handling.cpp:108:10: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write(STDOUT_FILENO, warning.c_str(), len); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 94%] Building CXX object src/CMakeFiles/libliggghts.dir/sort_buffer.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/sort_buffer.cpp.o -c /build/liggghts-3.8.0+repack1/src/sort_buffer.cpp +[ 94%] Building CXX object src/CMakeFiles/libliggghts.dir/special.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/special.cpp.o -c /build/liggghts-3.8.0+repack1/src/special.cpp +[ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/superquadric.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/superquadric.cpp.o -c /build/liggghts-3.8.0+repack1/src/superquadric.cpp [ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/tet_mesh.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/tet_mesh.cpp.o -c /build/liggghts-3.8.0+repack1/src/tet_mesh.cpp [ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/thermo.cpp.o @@ -4045,11 +4080,11 @@ cp -r examples/LIGGGHTS/Tutorials_public/heatTransfer_1/* test/ cd test; mpirun -np 2 --allow-run-as-root --oversubscribe /build/liggghts-3.8.0+repack1/debian/build/src/liggghts < in.heatGran -------------------------------------------------------------------------- -[[50227,1],0]: A high-performance Open MPI point-to-point messaging module +[[65113,1],0]: A high-performance Open MPI point-to-point messaging module was unable to find any relevant network interfaces: Module: OpenFabrics (openib) - Host: ionos15-amd64 + Host: i-capture-the-hostname Another transport will be used instead, although this may result in lower performance. @@ -4057,14 +4092,14 @@ NOTE: You can disable this warning by setting the MCA parameter btl_base_warn_component_unused to 0. -------------------------------------------------------------------------- -LIGGGHTS (Version LIGGGHTS-PUBLIC 3.8.0, compiled 2023-01-07-19:11:57 by pbuilder1, git commit unknown) +LIGGGHTS (Version LIGGGHTS-PUBLIC 3.8.0, compiled 2021-12-06-14:58:58 by pbuilder2, git commit unknown) Created orthogonal box = (-0.05 -0.05 0) to (0.05 0.05 0.15) 1 by 1 by 2 MPI processor grid Fix particledistribution/discrete (id pdd1): distribution based on mass%: pts1: d=8.000000e-03 (max. bounding sphere) mass%=100.000000% Fix particledistribution/discrete (id pdd1): distribution based on number%: pts1: d=8.000000e-03 (max. bounding sphere) number%=100.000000% -Setting up run at Sat Jan 7 19:15:18 2023 +Setting up run at Mon Dec 6 15:03:58 2021 INFO: Resetting random generator for region bc INFO: Particle insertion ins: inserting every 0 steps @@ -4096,14 +4131,14 @@ INFO: Particle insertion ins: inserted 889 particle templates (mass 1.906603e+00) at step 1 - a total of 889 particle templates (mass 1.906603e+00) inserted so far. 1 889 0.0858673 0 5719.8098 0.0015 -Loop time of 0.0187457 on 2 procs for 1 steps with 889 atoms, finish time Sat Jan 7 19:15:18 2023 +Loop time of 0.0391423 on 2 procs for 1 steps with 889 atoms, finish time Mon Dec 6 15:03:58 2021 -Pair time (%) = 3.9418e-05 (0.210277) -Neigh time (%) = 0.000581088 (3.09984) -Comm time (%) = 0.000292059 (1.558) -Outpt time (%) = 4.40425e-05 (0.234947) -Other time (%) = 0.0177891 (94.8969) +Pair time (%) = 3.58988e-05 (0.0917134) +Neigh time (%) = 0.000525204 (1.34178) +Comm time (%) = 0.000302942 (0.773951) +Outpt time (%) = 3.85139e-05 (0.0983946) +Other time (%) = 0.0382398 (97.6942) Nlocal: 444.5 ave 446 max 443 min Histogram: 1 0 0 0 0 0 0 0 0 1 @@ -4116,7 +4151,7 @@ Ave neighs/atom = 1.52418 Neighbor list builds = 1 Dangerous builds = 0 -Setting up run at Sat Jan 7 19:15:18 2023 +Setting up run at Mon Dec 6 15:03:58 2021 Memory usage per processor = 8.42521 Mbytes Step Atoms KinEng rke heattran Volume @@ -4128,9 +4163,9 @@ 5000 889 0.025728568 0.0031537134 5719.8098 0.0015 6000 889 0.0066287838 0.0017750363 5719.8098 0.0015 7000 889 0.0056666661 0.0011144246 5719.8098 0.0015 +[i-capture-the-hostname:3371835] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics +[i-capture-the-hostname:3371835] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 8000 889 0.0035001128 0.00068883305 5719.8098 0.0015 -[ionos15-amd64:2518434] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics -[ionos15-amd64:2518434] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 9000 889 0.001874252 0.00041791814 5719.8098 0.0015 10000 889 0.0011194605 0.00026336617 5719.8098 0.0015 11000 889 0.00028190569 0.00014289112 5719.8098 0.0015 @@ -4143,14 +4178,14 @@ 18000 889 1.9134527e-05 9.6788056e-06 5719.8098 0.0015 19000 889 4.4217855e-06 3.7107113e-06 5719.8098 0.0015 20000 889 2.3496863e-06 2.5381488e-06 5719.8098 0.0015 -Loop time of 16.864 on 2 procs for 19999 steps with 889 atoms, finish time Sat Jan 7 19:15:35 2023 +Loop time of 27.7473 on 2 procs for 19999 steps with 889 atoms, finish time Mon Dec 6 15:04:26 2021 -Pair time (%) = 5.23846 (31.063) -Neigh time (%) = 0.0796215 (0.47214) -Comm time (%) = 1.43433 (8.5053) -Outpt time (%) = 0.182234 (1.08061) -Other time (%) = 9.92932 (58.8789) +Pair time (%) = 7.14098 (25.7358) +Neigh time (%) = 0.0861702 (0.310554) +Comm time (%) = 1.99771 (7.19967) +Outpt time (%) = 0.25321 (0.912558) +Other time (%) = 18.2692 (65.8414) Nlocal: 444.5 ave 889 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 1 @@ -4165,7 +4200,7 @@ Dangerous builds = 0 Setting atom values ... 440 settings made for property/atom -Setting up run at Sat Jan 7 19:15:35 2023 +Setting up run at Mon Dec 6 15:04:26 2021 Memory usage per processor = 8.72219 Mbytes Step Atoms KinEng rke heattran Volume @@ -4200,14 +4235,14 @@ 48000 889 4.1028794e-09 1.8257014e-08 10438.063 0.0015 49000 889 4.1101685e-09 1.8256258e-08 10438.063 0.0015 50000 889 2.8053107e-09 1.4643392e-08 10438.063 0.0015 -Loop time of 31.6865 on 2 procs for 30000 steps with 889 atoms, finish time Sat Jan 7 19:16:06 2023 +Loop time of 97.3516 on 2 procs for 30000 steps with 889 atoms, finish time Mon Dec 6 15:06:03 2021 -Pair time (%) = 9.78987 (30.896) -Neigh time (%) = 0.000958406 (0.00302465) -Comm time (%) = 0.0218717 (0.0690253) -Outpt time (%) = 0.291256 (0.919179) -Other time (%) = 21.5826 (68.1128) +Pair time (%) = 16.3206 (16.7646) +Neigh time (%) = 0.00103965 (0.00106793) +Comm time (%) = 0.102895 (0.105694) +Outpt time (%) = 2.62174 (2.69306) +Other time (%) = 78.3054 (80.4356) Nlocal: 444.5 ave 889 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 1 @@ -4225,11 +4260,11 @@ cp -r examples/LIGGGHTS/Tutorials_public/heatTransfer_1/* test/ cd test; /build/liggghts-3.8.0+repack1/debian/build/src/liggghts < in.heatGran -------------------------------------------------------------------------- -[[55202,1],0]: A high-performance Open MPI point-to-point messaging module +[[37046,1],0]: A high-performance Open MPI point-to-point messaging module was unable to find any relevant network interfaces: Module: OpenFabrics (openib) - Host: ionos15-amd64 + Host: i-capture-the-hostname Another transport will be used instead, although this may result in lower performance. @@ -4237,14 +4272,14 @@ NOTE: You can disable this warning by setting the MCA parameter btl_base_warn_component_unused to 0. -------------------------------------------------------------------------- -LIGGGHTS (Version LIGGGHTS-PUBLIC 3.8.0, compiled 2023-01-07-19:11:57 by pbuilder1, git commit unknown) +LIGGGHTS (Version LIGGGHTS-PUBLIC 3.8.0, compiled 2021-12-06-14:58:58 by pbuilder2, git commit unknown) Created orthogonal box = (-0.05 -0.05 0) to (0.05 0.05 0.15) 1 by 1 by 1 MPI processor grid Fix particledistribution/discrete (id pdd1): distribution based on mass%: pts1: d=8.000000e-03 (max. bounding sphere) mass%=100.000000% Fix particledistribution/discrete (id pdd1): distribution based on number%: pts1: d=8.000000e-03 (max. bounding sphere) number%=100.000000% -Setting up run at Sat Jan 7 19:16:08 2023 +Setting up run at Mon Dec 6 15:06:05 2021 INFO: Resetting random generator for region bc INFO: Particle insertion ins: inserting every 0 steps @@ -4264,14 +4299,14 @@ INFO: Particle insertion ins: inserted 890 particle templates (mass 1.908748e+00) at step 1 - a total of 890 particle templates (mass 1.908748e+00) inserted so far. 1 890 0.085963889 0 5726.2438 0.0015 -Loop time of 0.0353161 on 1 procs for 1 steps with 890 atoms, finish time Sat Jan 7 19:16:08 2023 +Loop time of 0.0499182 on 1 procs for 1 steps with 890 atoms, finish time Mon Dec 6 15:06:05 2021 -Pair time (%) = 0.000110787 (0.313701) -Neigh time (%) = 0.00101708 (2.87993) -Comm time (%) = 1.57473e-05 (0.0445895) -Outpt time (%) = 4.5557e-05 (0.128998) -Other time (%) = 0.0341269 (96.6328) +Pair time (%) = 6.89076e-05 (0.138041) +Neigh time (%) = 0.000916579 (1.83616) +Comm time (%) = 1.60551e-05 (0.0321628) +Outpt time (%) = 4.0669e-05 (0.0814713) +Other time (%) = 0.048876 (97.9122) Nlocal: 890 ave 890 max 890 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -4284,7 +4319,7 @@ Ave neighs/atom = 1.54719 Neighbor list builds = 1 Dangerous builds = 0 -Setting up run at Sat Jan 7 19:16:08 2023 +Setting up run at Mon Dec 6 15:06:05 2021 Memory usage per processor = 8.46413 Mbytes Step Atoms KinEng rke heattran Volume @@ -4309,14 +4344,14 @@ 18000 890 1.4676598e-05 7.0850812e-06 5726.2438 0.0015 19000 890 3.7770954e-06 4.6853468e-06 5726.2438 0.0015 20000 890 5.3031725e-07 1.3357401e-06 5726.2438 0.0015 -Loop time of 23.082 on 1 procs for 19999 steps with 890 atoms, finish time Sat Jan 7 19:16:31 2023 +Loop time of 50.9355 on 1 procs for 19999 steps with 890 atoms, finish time Mon Dec 6 15:06:56 2021 -Pair time (%) = 15.7569 (68.265) -Neigh time (%) = 0.165963 (0.719015) -Comm time (%) = 0.0219255 (0.0949896) -Outpt time (%) = 0.313425 (1.35788) -Other time (%) = 6.82374 (29.5631) +Pair time (%) = 31.9134 (62.6546) +Neigh time (%) = 0.329415 (0.64673) +Comm time (%) = 0.039541 (0.0776296) +Outpt time (%) = 0.796675 (1.56409) +Other time (%) = 17.8564 (35.057) Nlocal: 890 ave 890 max 890 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -4331,7 +4366,7 @@ Dangerous builds = 0 Setting atom values ... 445 settings made for property/atom -Setting up run at Sat Jan 7 19:16:31 2023 +Setting up run at Mon Dec 6 15:06:56 2021 Memory usage per processor = 8.75284 Mbytes Step Atoms KinEng rke heattran Volume @@ -4366,14 +4401,14 @@ 48000 890 9.0915381e-09 2.6785102e-08 10498.114 0.0015 49000 890 8.3490816e-10 2.0441102e-08 10498.114 0.0015 50000 890 5.7112432e-09 2.069405e-08 10498.114 0.0015 -Loop time of 38.0301 on 1 procs for 30000 steps with 890 atoms, finish time Sat Jan 7 19:17:09 2023 +Loop time of 67.2948 on 1 procs for 30000 steps with 890 atoms, finish time Mon Dec 6 15:08:03 2021 -Pair time (%) = 26.6651 (70.1157) -Neigh time (%) = 0.00116139 (0.00305387) -Comm time (%) = 0.0156166 (0.0410638) -Outpt time (%) = 0.438904 (1.1541) -Other time (%) = 10.9093 (28.6861) +Pair time (%) = 42.7272 (63.4925) +Neigh time (%) = 0.00106864 (0.001588) +Comm time (%) = 0.0420852 (0.0625385) +Outpt time (%) = 0.946069 (1.40586) +Other time (%) = 23.5784 (35.0375) Nlocal: 890 ave 890 max 890 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -4394,7 +4429,7 @@ dh_testroot -O--buildsystem=cmake -O--builddirectory=/build/liggghts-3.8.0\+repack1/debian/build dh_prep -O--buildsystem=cmake -O--builddirectory=/build/liggghts-3.8.0\+repack1/debian/build dh_auto_install -O--buildsystem=cmake -O--builddirectory=/build/liggghts-3.8.0\+repack1/debian/build - cd debian/build && make -j16 install DESTDIR=/build/liggghts-3.8.0\+repack1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd debian/build && make -j15 install DESTDIR=/build/liggghts-3.8.0\+repack1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/liggghts-3.8.0+repack1/debian/build' /usr/bin/cmake -S/build/liggghts-3.8.0+repack1 -B/build/liggghts-3.8.0+repack1/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/liggghts-3.8.0+repack1/debian/build/CMakeFiles /build/liggghts-3.8.0+repack1/debian/build/CMakeFiles/progress.marks @@ -4921,16 +4956,16 @@ dh_shlibdeps -O--buildsystem=cmake -O--builddirectory=/build/liggghts-3.8.0\+repack1/debian/build dh_installdeb -O--buildsystem=cmake -O--builddirectory=/build/liggghts-3.8.0\+repack1/debian/build dh_gencontrol -O--buildsystem=cmake -O--builddirectory=/build/liggghts-3.8.0\+repack1/debian/build -dpkg-gencontrol: warning: Depends field of package liggghts-doc: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libliggghts-dev: substitution variable ${shlibs:Depends} used, but is not defined +dpkg-gencontrol: warning: Depends field of package liggghts-doc: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=cmake -O--builddirectory=/build/liggghts-3.8.0\+repack1/debian/build dh_builddeb -O--buildsystem=cmake -O--builddirectory=/build/liggghts-3.8.0\+repack1/debian/build dpkg-deb: building package 'libliggghts-dev' in '../libliggghts-dev_3.8.0+repack1-4_amd64.deb'. dpkg-deb: building package 'libliggghts3-dbgsym' in '../libliggghts3-dbgsym_3.8.0+repack1-4_amd64.deb'. -dpkg-deb: building package 'libliggghts3' in '../libliggghts3_3.8.0+repack1-4_amd64.deb'. dpkg-deb: building package 'liggghts' in '../liggghts_3.8.0+repack1-4_amd64.deb'. -dpkg-deb: building package 'liggghts-doc' in '../liggghts-doc_3.8.0+repack1-4_all.deb'. dpkg-deb: building package 'liggghts-dbgsym' in '../liggghts-dbgsym_3.8.0+repack1-4_amd64.deb'. +dpkg-deb: building package 'liggghts-doc' in '../liggghts-doc_3.8.0+repack1-4_all.deb'. +dpkg-deb: building package 'libliggghts3' in '../libliggghts3_3.8.0+repack1-4_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../liggghts_3.8.0+repack1-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4938,12 +4973,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3077839/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3077839/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2463516 and its subdirectories -I: Current time: Sat Jan 7 19:17:58 -12 2023 -I: pbuilder-time-stamp: 1673162278 +I: removing directory /srv/workspace/pbuilder/3077839 and its subdirectories +I: Current time: Mon Dec 6 15:09:38 +14 2021 +I: pbuilder-time-stamp: 1638752978