Diff of the two buildlogs:

--
--- b1/build.log	2021-06-20 16:18:15.503705975 +0000
+++ b2/build.log	2021-06-20 16:21:55.719365160 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Sun Jun 20 04:12:32 -12 2021
-I: pbuilder-time-stamp: 1624205552
+I: Current time: Sun Jul 24 12:41:18 +14 2022
+I: pbuilder-time-stamp: 1658616078
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz]
 I: copying local configuration
@@ -17,7 +17,7 @@
 I: Extracting source
 gpgv: unknown type of key resource 'trustedkeys.kbx'
 gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
-gpgv: Signature made Sat Jun 23 06:21:21 2018 -12
+gpgv: Signature made Sun Jun 24 08:21:21 2018 +14
 gpgv:                using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
 gpgv: Can't check signature: No public key
 dpkg-source: warning: failed to verify signature on ./libpll_0.3.2-2.dsc
@@ -26,136 +26,170 @@
 dpkg-source: info: unpacking libpll_0.3.2-2.debian.tar.xz
 I: using fakeroot in build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/42841/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/61353/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos15-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
+Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
+Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
+Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/61353/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/61353/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='amd64'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15'
-  DISTRIBUTION=''
-  HOME='/root'
-  HOST_ARCH='amd64'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
+  BASH_VERSION='5.0.3(1)-release'
+  BUILDDIR=/build
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=amd64
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16'
+  DIRSTACK=()
+  DISTRIBUTION=
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=x86_64
+  HOST_ARCH=amd64
   IFS=' 	
   '
-  INVOCATION_ID='6f65b2174b4848fead70fd325b02c499'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='42841'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=7c7cbc54b41e433e8c1cb31cf349db2d
+  LANG=C
+  LANGUAGE=et_EE:et
+  LC_ALL=C
+  MACHTYPE=x86_64-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=61353
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.8yzYCwUoBA/pbuilderrc_zWaR --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.8yzYCwUoBA/b1 --logfile b1/build.log libpll_0.3.2-2.dsc'
-  SUDO_GID='111'
-  SUDO_UID='106'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://78.137.99.97:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.8yzYCwUoBA/pbuilderrc_bz4j --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.8yzYCwUoBA/b2 --logfile b2/build.log libpll_0.3.2-2.dsc'
+  SUDO_GID=111
+  SUDO_UID=106
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://85.184.249.68:3128
 I: uname -a
-  Linux ionos11-amd64 4.19.0-17-amd64 #1 SMP Debian 4.19.194-1 (2021-06-10) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 5.10.0-0.bpo.7-amd64 #1 SMP Debian 5.10.40-1~bpo10+1 (2021-06-04) x86_64 GNU/Linux
 I: ls -l /bin
   total 5116
-  -rwxr-xr-x 1 root root 1168776 Apr 17  2019 bash
-  -rwxr-xr-x 3 root root   38984 Jul 10  2019 bunzip2
-  -rwxr-xr-x 3 root root   38984 Jul 10  2019 bzcat
-  lrwxrwxrwx 1 root root       6 Jul 10  2019 bzcmp -> bzdiff
-  -rwxr-xr-x 1 root root    2227 Jul 10  2019 bzdiff
-  lrwxrwxrwx 1 root root       6 Jul 10  2019 bzegrep -> bzgrep
-  -rwxr-xr-x 1 root root    4877 Jun 24  2019 bzexe
-  lrwxrwxrwx 1 root root       6 Jul 10  2019 bzfgrep -> bzgrep
-  -rwxr-xr-x 1 root root    3641 Jul 10  2019 bzgrep
-  -rwxr-xr-x 3 root root   38984 Jul 10  2019 bzip2
-  -rwxr-xr-x 1 root root   14328 Jul 10  2019 bzip2recover
-  lrwxrwxrwx 1 root root       6 Jul 10  2019 bzless -> bzmore
-  -rwxr-xr-x 1 root root    1297 Jul 10  2019 bzmore
-  -rwxr-xr-x 1 root root   43744 Feb 28  2019 cat
-  -rwxr-xr-x 1 root root   64320 Feb 28  2019 chgrp
-  -rwxr-xr-x 1 root root   64288 Feb 28  2019 chmod
-  -rwxr-xr-x 1 root root   72512 Feb 28  2019 chown
-  -rwxr-xr-x 1 root root  146880 Feb 28  2019 cp
-  -rwxr-xr-x 1 root root  121464 Jan 17  2019 dash
-  -rwxr-xr-x 1 root root  109408 Feb 28  2019 date
-  -rwxr-xr-x 1 root root   76712 Feb 28  2019 dd
-  -rwxr-xr-x 1 root root   93744 Feb 28  2019 df
-  -rwxr-xr-x 1 root root  138856 Feb 28  2019 dir
-  -rwxr-xr-x 1 root root   84288 Jan  9  2019 dmesg
-  lrwxrwxrwx 1 root root       8 Sep 26  2018 dnsdomainname -> hostname
-  lrwxrwxrwx 1 root root       8 Sep 26  2018 domainname -> hostname
-  -rwxr-xr-x 1 root root   39520 Feb 28  2019 echo
-  -rwxr-xr-x 1 root root      28 Jan  7  2019 egrep
-  -rwxr-xr-x 1 root root   35424 Feb 28  2019 false
-  -rwxr-xr-x 1 root root      28 Jan  7  2019 fgrep
-  -rwxr-xr-x 1 root root   68880 Jan  9  2019 findmnt
-  -rwsr-xr-x 1 root root   34896 Apr 22  2020 fusermount
-  -rwxr-xr-x 1 root root  198976 Jan  7  2019 grep
-  -rwxr-xr-x 2 root root    2345 Jan  5  2019 gunzip
-  -rwxr-xr-x 1 root root    6375 Jan  5  2019 gzexe
-  -rwxr-xr-x 1 root root   98048 Jan  5  2019 gzip
-  -rwxr-xr-x 1 root root   26696 Sep 26  2018 hostname
-  -rwxr-xr-x 1 root root   68552 Feb 28  2019 ln
-  -rwxr-xr-x 1 root root   56760 Jul 26  2018 login
-  -rwxr-xr-x 1 root root  138856 Feb 28  2019 ls
-  -rwxr-xr-x 1 root root  108624 Jan  9  2019 lsblk
-  -rwxr-xr-x 1 root root   89088 Feb 28  2019 mkdir
-  -rwxr-xr-x 1 root root   68544 Feb 28  2019 mknod
-  -rwxr-xr-x 1 root root   43808 Feb 28  2019 mktemp
-  -rwxr-xr-x 1 root root   43008 Jan  9  2019 more
-  -rwsr-xr-x 1 root root   51280 Jan  9  2019 mount
-  -rwxr-xr-x 1 root root   14408 Jan  9  2019 mountpoint
-  -rwxr-xr-x 1 root root  138728 Feb 28  2019 mv
-  lrwxrwxrwx 1 root root       8 Sep 26  2018 nisdomainname -> hostname
-  lrwxrwxrwx 1 root root      14 Feb 14  2019 pidof -> /sbin/killall5
-  -rwxr-xr-x 1 root root   39616 Feb 28  2019 pwd
-  lrwxrwxrwx 1 root root       4 Apr 17  2019 rbash -> bash
-  -rwxr-xr-x 1 root root   47776 Feb 28  2019 readlink
-  -rwxr-xr-x 1 root root   68416 Feb 28  2019 rm
-  -rwxr-xr-x 1 root root   47776 Feb 28  2019 rmdir
-  -rwxr-xr-x 1 root root   23312 Jan 21  2019 run-parts
-  -rwxr-xr-x 1 root root  122224 Dec 22  2018 sed
-  lrwxrwxrwx 1 root root       4 Jun  6 20:25 sh -> dash
-  -rwxr-xr-x 1 root root   39552 Feb 28  2019 sleep
-  -rwxr-xr-x 1 root root   80672 Feb 28  2019 stty
-  -rwsr-xr-x 1 root root   63568 Jan  9  2019 su
-  -rwxr-xr-x 1 root root   35488 Feb 28  2019 sync
-  -rwxr-xr-x 1 root root  445560 Apr 23  2019 tar
-  -rwxr-xr-x 1 root root   14440 Jan 21  2019 tempfile
-  -rwxr-xr-x 1 root root   97152 Feb 28  2019 touch
-  -rwxr-xr-x 1 root root   35424 Feb 28  2019 true
-  -rwxr-xr-x 1 root root   14328 Apr 22  2020 ulockmgr_server
-  -rwsr-xr-x 1 root root   34888 Jan  9  2019 umount
-  -rwxr-xr-x 1 root root   39584 Feb 28  2019 uname
-  -rwxr-xr-x 2 root root    2345 Jan  5  2019 uncompress
-  -rwxr-xr-x 1 root root  138856 Feb 28  2019 vdir
-  -rwxr-xr-x 1 root root   34896 Jan  9  2019 wdctl
-  -rwxr-xr-x 1 root root     946 Jan 21  2019 which
-  lrwxrwxrwx 1 root root       8 Sep 26  2018 ypdomainname -> hostname
-  -rwxr-xr-x 1 root root    1983 Jan  5  2019 zcat
-  -rwxr-xr-x 1 root root    1677 Jan  5  2019 zcmp
-  -rwxr-xr-x 1 root root    5879 Jan  5  2019 zdiff
-  -rwxr-xr-x 1 root root      29 Jan  5  2019 zegrep
-  -rwxr-xr-x 1 root root      29 Jan  5  2019 zfgrep
-  -rwxr-xr-x 1 root root    2080 Jan  5  2019 zforce
-  -rwxr-xr-x 1 root root    7584 Jan  5  2019 zgrep
-  -rwxr-xr-x 1 root root    2205 Jan  5  2019 zless
-  -rwxr-xr-x 1 root root    1841 Jan  5  2019 zmore
-  -rwxr-xr-x 1 root root    4552 Jan  5  2019 znew
-I: user script /srv/workspace/pbuilder/42841/tmp/hooks/D02_print_environment finished
+  -rwxr-xr-x 1 root root 1168776 Apr 18  2019 bash
+  -rwxr-xr-x 3 root root   38984 Jul 11  2019 bunzip2
+  -rwxr-xr-x 3 root root   38984 Jul 11  2019 bzcat
+  lrwxrwxrwx 1 root root       6 Jul 11  2019 bzcmp -> bzdiff
+  -rwxr-xr-x 1 root root    2227 Jul 11  2019 bzdiff
+  lrwxrwxrwx 1 root root       6 Jul 11  2019 bzegrep -> bzgrep
+  -rwxr-xr-x 1 root root    4877 Jun 25  2019 bzexe
+  lrwxrwxrwx 1 root root       6 Jul 11  2019 bzfgrep -> bzgrep
+  -rwxr-xr-x 1 root root    3641 Jul 11  2019 bzgrep
+  -rwxr-xr-x 3 root root   38984 Jul 11  2019 bzip2
+  -rwxr-xr-x 1 root root   14328 Jul 11  2019 bzip2recover
+  lrwxrwxrwx 1 root root       6 Jul 11  2019 bzless -> bzmore
+  -rwxr-xr-x 1 root root    1297 Jul 11  2019 bzmore
+  -rwxr-xr-x 1 root root   43744 Mar  1  2019 cat
+  -rwxr-xr-x 1 root root   64320 Mar  1  2019 chgrp
+  -rwxr-xr-x 1 root root   64288 Mar  1  2019 chmod
+  -rwxr-xr-x 1 root root   72512 Mar  1  2019 chown
+  -rwxr-xr-x 1 root root  146880 Mar  1  2019 cp
+  -rwxr-xr-x 1 root root  121464 Jan 18  2019 dash
+  -rwxr-xr-x 1 root root  109408 Mar  1  2019 date
+  -rwxr-xr-x 1 root root   76712 Mar  1  2019 dd
+  -rwxr-xr-x 1 root root   93744 Mar  1  2019 df
+  -rwxr-xr-x 1 root root  138856 Mar  1  2019 dir
+  -rwxr-xr-x 1 root root   84288 Jan 10  2019 dmesg
+  lrwxrwxrwx 1 root root       8 Sep 27  2018 dnsdomainname -> hostname
+  lrwxrwxrwx 1 root root       8 Sep 27  2018 domainname -> hostname
+  -rwxr-xr-x 1 root root   39520 Mar  1  2019 echo
+  -rwxr-xr-x 1 root root      28 Jan  8  2019 egrep
+  -rwxr-xr-x 1 root root   35424 Mar  1  2019 false
+  -rwxr-xr-x 1 root root      28 Jan  8  2019 fgrep
+  -rwxr-xr-x 1 root root   68880 Jan 10  2019 findmnt
+  -rwsr-xr-x 1 root root   34896 Apr 23  2020 fusermount
+  -rwxr-xr-x 1 root root  198976 Jan  8  2019 grep
+  -rwxr-xr-x 2 root root    2345 Jan  6  2019 gunzip
+  -rwxr-xr-x 1 root root    6375 Jan  6  2019 gzexe
+  -rwxr-xr-x 1 root root   98048 Jan  6  2019 gzip
+  -rwxr-xr-x 1 root root   26696 Sep 27  2018 hostname
+  -rwxr-xr-x 1 root root   68552 Mar  1  2019 ln
+  -rwxr-xr-x 1 root root   56760 Jul 27  2018 login
+  -rwxr-xr-x 1 root root  138856 Mar  1  2019 ls
+  -rwxr-xr-x 1 root root  108624 Jan 10  2019 lsblk
+  -rwxr-xr-x 1 root root   89088 Mar  1  2019 mkdir
+  -rwxr-xr-x 1 root root   68544 Mar  1  2019 mknod
+  -rwxr-xr-x 1 root root   43808 Mar  1  2019 mktemp
+  -rwxr-xr-x 1 root root   43008 Jan 10  2019 more
+  -rwsr-xr-x 1 root root   51280 Jan 10  2019 mount
+  -rwxr-xr-x 1 root root   14408 Jan 10  2019 mountpoint
+  -rwxr-xr-x 1 root root  138728 Mar  1  2019 mv
+  lrwxrwxrwx 1 root root       8 Sep 27  2018 nisdomainname -> hostname
+  lrwxrwxrwx 1 root root      14 Feb 15  2019 pidof -> /sbin/killall5
+  -rwxr-xr-x 1 root root   39616 Mar  1  2019 pwd
+  lrwxrwxrwx 1 root root       4 Apr 18  2019 rbash -> bash
+  -rwxr-xr-x 1 root root   47776 Mar  1  2019 readlink
+  -rwxr-xr-x 1 root root   68416 Mar  1  2019 rm
+  -rwxr-xr-x 1 root root   47776 Mar  1  2019 rmdir
+  -rwxr-xr-x 1 root root   23312 Jan 22  2019 run-parts
+  -rwxr-xr-x 1 root root  122224 Dec 23  2018 sed
+  lrwxrwxrwx 1 root root       4 Jul 24 12:41 sh -> bash
+  lrwxrwxrwx 1 root root       4 Jul 11 04:46 sh.distrib -> dash
+  -rwxr-xr-x 1 root root   39552 Mar  1  2019 sleep
+  -rwxr-xr-x 1 root root   80672 Mar  1  2019 stty
+  -rwsr-xr-x 1 root root   63568 Jan 10  2019 su
+  -rwxr-xr-x 1 root root   35488 Mar  1  2019 sync
+  -rwxr-xr-x 1 root root  445560 Apr 24  2019 tar
+  -rwxr-xr-x 1 root root   14440 Jan 22  2019 tempfile
+  -rwxr-xr-x 1 root root   97152 Mar  1  2019 touch
+  -rwxr-xr-x 1 root root   35424 Mar  1  2019 true
+  -rwxr-xr-x 1 root root   14328 Apr 23  2020 ulockmgr_server
+  -rwsr-xr-x 1 root root   34888 Jan 10  2019 umount
+  -rwxr-xr-x 1 root root   39584 Mar  1  2019 uname
+  -rwxr-xr-x 2 root root    2345 Jan  6  2019 uncompress
+  -rwxr-xr-x 1 root root  138856 Mar  1  2019 vdir
+  -rwxr-xr-x 1 root root   34896 Jan 10  2019 wdctl
+  -rwxr-xr-x 1 root root     946 Jan 22  2019 which
+  lrwxrwxrwx 1 root root       8 Sep 27  2018 ypdomainname -> hostname
+  -rwxr-xr-x 1 root root    1983 Jan  6  2019 zcat
+  -rwxr-xr-x 1 root root    1677 Jan  6  2019 zcmp
+  -rwxr-xr-x 1 root root    5879 Jan  6  2019 zdiff
+  -rwxr-xr-x 1 root root      29 Jan  6  2019 zegrep
+  -rwxr-xr-x 1 root root      29 Jan  6  2019 zfgrep
+  -rwxr-xr-x 1 root root    2080 Jan  6  2019 zforce
+  -rwxr-xr-x 1 root root    7584 Jan  6  2019 zgrep
+  -rwxr-xr-x 1 root root    2205 Jan  6  2019 zless
+  -rwxr-xr-x 1 root root    1841 Jan  6  2019 zmore
+  -rwxr-xr-x 1 root root    4552 Jan  6  2019 znew
+I: user script /srv/workspace/pbuilder/61353/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -237,7 +271,7 @@
 Get: 36 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
 Get: 37 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB]
 Get: 38 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB]
-Fetched 21.6 MB in 1s (14.8 MB/s)
+Fetched 21.6 MB in 1s (28.1 MB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package libbsd0:amd64.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19195 files and directories currently installed.)
@@ -413,7 +447,7 @@
 fakeroot is already the newest version (1.23-1).
 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 I: Building the package
-I: Running cd /build/libpll-0.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b
+I: Running cd /build/libpll-0.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b
 dpkg-buildpackage: info: source package libpll
 dpkg-buildpackage: info: source version 0.3.2-2
 dpkg-buildpackage: info: source distribution unstable
@@ -591,69 +625,75 @@
 
 make[1]: Leaving directory '/build/libpll-0.3.2'
    dh_auto_build
-	make -j15
+	make -j16
 make[1]: Entering directory '/build/libpll-0.3.2'
 make  all-recursive
 make[2]: Entering directory '/build/libpll-0.3.2'
 Making all in src
 make[3]: Entering directory '/build/libpll-0.3.2/src'
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fasta.lo `test -f 'fasta.c' || echo './'`fasta.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-gamma.lo `test -f 'gamma.c' || echo './'`gamma.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-likelihood.lo `test -f 'likelihood.c' || echo './'`likelihood.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-list.lo `test -f 'list.c' || echo './'`list.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-maps.lo `test -f 'maps.c' || echo './'`maps.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-models.lo `test -f 'models.c' || echo './'`models.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-pll.lo `test -f 'pll.c' || echo './'`pll.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-output.lo `test -f 'output.c' || echo './'`output.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree.lo `test -f 'utree.c' || echo './'`utree.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-rtree.lo `test -f 'rtree.c' || echo './'`rtree.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-derivatives.lo `test -f 'derivatives.c' || echo './'`derivatives.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-partials.lo `test -f 'partials.c' || echo './'`partials.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-compress.lo `test -f 'compress.c' || echo './'`compress.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree_moves.lo `test -f 'utree_moves.c' || echo './'`utree_moves.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree_svg.lo `test -f 'utree_svg.c' || echo './'`utree_svg.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fasta.lo `test -f 'fasta.c' || echo './'`fasta.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-gamma.lo `test -f 'gamma.c' || echo './'`gamma.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-likelihood.lo `test -f 'likelihood.c' || echo './'`likelihood.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-list.lo `test -f 'list.c' || echo './'`list.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-maps.lo `test -f 'maps.c' || echo './'`maps.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-models.lo `test -f 'models.c' || echo './'`models.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-pll.lo `test -f 'pll.c' || echo './'`pll.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-output.lo `test -f 'output.c' || echo './'`output.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree.lo `test -f 'utree.c' || echo './'`utree.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-rtree.lo `test -f 'rtree.c' || echo './'`rtree.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-derivatives.lo `test -f 'derivatives.c' || echo './'`derivatives.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-partials.lo `test -f 'partials.c' || echo './'`partials.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-compress.lo `test -f 'compress.c' || echo './'`compress.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree_moves.lo `test -f 'utree_moves.c' || echo './'`utree_moves.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree_svg.lo `test -f 'utree_svg.c' || echo './'`utree_svg.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parsimony.lo `test -f 'parsimony.c' || echo './'`parsimony.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c  -fPIC -DPIC -o .libs/libpll_la-fasta.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c likelihood.c  -fPIC -DPIC -o .libs/libpll_la-likelihood.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c  -fPIC -DPIC -o .libs/libpll_la-gamma.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c list.c  -fPIC -DPIC -o .libs/libpll_la-list.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c maps.c  -fPIC -DPIC -o .libs/libpll_la-maps.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c likelihood.c  -fPIC -DPIC -o .libs/libpll_la-likelihood.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c pll.c  -fPIC -DPIC -o .libs/libpll_la-pll.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c output.c  -fPIC -DPIC -o .libs/libpll_la-output.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c rtree.c  -fPIC -DPIC -o .libs/libpll_la-rtree.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c models.c  -fPIC -DPIC -o .libs/libpll_la-models.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree.c  -fPIC -DPIC -o .libs/libpll_la-utree.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c  -fPIC -DPIC -o .libs/libpll_la-fasta.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c  -fPIC -DPIC -o .libs/libpll_la-gamma.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_moves.c  -fPIC -DPIC -o .libs/libpll_la-utree_moves.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_svg.c  -fPIC -DPIC -o .libs/libpll_la-utree_svg.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c models.c  -fPIC -DPIC -o .libs/libpll_la-models.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c derivatives.c  -fPIC -DPIC -o .libs/libpll_la-derivatives.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c rtree.c  -fPIC -DPIC -o .libs/libpll_la-rtree.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c pll.c  -fPIC -DPIC -o .libs/libpll_la-pll.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c partials.c  -fPIC -DPIC -o .libs/libpll_la-partials.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c output.c  -fPIC -DPIC -o .libs/libpll_la-output.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_moves.c  -fPIC -DPIC -o .libs/libpll_la-utree_moves.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c compress.c  -fPIC -DPIC -o .libs/libpll_la-compress.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c -o libpll_la-fasta.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c list.c -o libpll_la-list.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_svg.c  -fPIC -DPIC -o .libs/libpll_la-utree_svg.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parsimony.c  -fPIC -DPIC -o .libs/libpll_la-parsimony.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_moves.c -o libpll_la-utree_moves.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parsimony.c -o libpll_la-parsimony.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c output.c -o libpll_la-output.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c maps.c -o libpll_la-maps.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c -o libpll_la-gamma.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c derivatives.c -o libpll_la-derivatives.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c partials.c -o libpll_la-partials.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c likelihood.c -o libpll_la-likelihood.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_svg.c -o libpll_la-utree_svg.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c rtree.c -o libpll_la-rtree.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_moves.c -o libpll_la-utree_moves.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c derivatives.c -o libpll_la-derivatives.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c -o libpll_la-fasta.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c partials.c -o libpll_la-partials.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c list.c -o libpll_la-list.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c compress.c -o libpll_la-compress.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree.c -o libpll_la-utree.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c -o libpll_la-gamma.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c likelihood.c -o libpll_la-likelihood.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c pll.c -o libpll_la-pll.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parsimony.lo `test -f 'parsimony.c' || echo './'`parsimony.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_derivatives.lo `test -f 'core_derivatives.c' || echo './'`core_derivatives.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_partials.lo `test -f 'core_partials.c' || echo './'`core_partials.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parsimony.c  -fPIC -DPIC -o .libs/libpll_la-parsimony.o
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_pmatrix.lo `test -f 'core_pmatrix.c' || echo './'`core_pmatrix.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_likelihood.lo `test -f 'core_likelihood.c' || echo './'`core_likelihood.c
-/bin/bash ../ylwrap parse_utree.y y.tab.c parse_utree.c y.tab.h `echo parse_utree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_utree.output -- bison -y -d -p `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_utree"` 
-/bin/bash ../ylwrap parse_rtree.y y.tab.c parse_rtree.c y.tab.h `echo parse_rtree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_rtree.output -- bison -y -d -p `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_rtree"` 
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_partials.c  -fPIC -DPIC -o .libs/libpll_la-core_partials.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_derivatives.c  -fPIC -DPIC -o .libs/libpll_la-core_derivatives.o
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_derivatives.lo `test -f 'core_derivatives.c' || echo './'`core_derivatives.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_partials.lo `test -f 'core_partials.c' || echo './'`core_partials.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c models.c -o libpll_la-models.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_pmatrix.lo `test -f 'core_pmatrix.c' || echo './'`core_pmatrix.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree.c -o libpll_la-utree.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_derivatives.c  -fPIC -DPIC -o .libs/libpll_la-core_derivatives.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_partials.c  -fPIC -DPIC -o .libs/libpll_la-core_partials.o
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_likelihood.lo `test -f 'core_likelihood.c' || echo './'`core_likelihood.c
+/bin/sh ../ylwrap parse_utree.y y.tab.c parse_utree.c y.tab.h `echo parse_utree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_utree.output -- bison -y -d -p `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_utree"` 
+/bin/sh ../ylwrap parse_rtree.y y.tab.c parse_rtree.c y.tab.h `echo parse_rtree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_rtree.output -- bison -y -d -p `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_rtree"` 
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_pmatrix.c  -fPIC -DPIC -o .libs/libpll_la-core_pmatrix.o
+/bin/sh ../ylwrap lex_utree.l lex.yy.c lex_utree.c -- flex -P `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"lex_utree"` -o lex.yy.c 
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_likelihood.c  -fPIC -DPIC -o .libs/libpll_la-core_likelihood.o
+/bin/sh ../ylwrap lex_rtree.l lex.yy.c lex_rtree.c -- flex -P `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"lex_rtree"` -o lex.yy.c 
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fast_parsimony.lo `test -f 'fast_parsimony.c' || echo './'`fast_parsimony.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fast_parsimony.c  -fPIC -DPIC -o .libs/libpll_la-fast_parsimony.o
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-stepwise.lo `test -f 'stepwise.c' || echo './'`stepwise.c
 /build/libpll-0.3.2/src/parse_utree.y:159.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc]
  %error-verbose
  ^~~~~~~~~~~~~~
@@ -672,6 +712,8 @@
 /build/libpll-0.3.2/src/parse_utree.y:164.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc]
  %destructor { free($$); } label
  ^~~~~~~~~~~
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-random.lo `test -f 'random.c' || echo './'`random.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-phylip.lo `test -f 'phylip.c' || echo './'`phylip.c
 /build/libpll-0.3.2/src/parse_rtree.y:102.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc]
  %error-verbose
  ^~~~~~~~~~~~~~
@@ -690,97 +732,89 @@
 /build/libpll-0.3.2/src/parse_rtree.y:107.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc]
  %destructor { free($$); } label
  ^~~~~~~~~~~
-/bin/bash ../ylwrap lex_utree.l lex.yy.c lex_utree.c -- flex -P `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"lex_utree"` -o lex.yy.c 
-/build/libpll-0.3.2/src/parse_rtree.y: warning: fix-its can be applied.  Rerun with option '--update'. [-Wother]
 /build/libpll-0.3.2/src/parse_utree.y: warning: fix-its can be applied.  Rerun with option '--update'. [-Wother]
-/bin/bash ../ylwrap lex_rtree.l lex.yy.c lex_rtree.c -- flex -P `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"lex_rtree"` -o lex.yy.c 
-updating parse_rtree.h
-updating parse_utree.h
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fast_parsimony.lo `test -f 'fast_parsimony.c' || echo './'`fast_parsimony.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-stepwise.lo `test -f 'stepwise.c' || echo './'`stepwise.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-random.lo `test -f 'random.c' || echo './'`random.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-phylip.lo `test -f 'phylip.c' || echo './'`phylip.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-hardware.lo `test -f 'hardware.c' || echo './'`hardware.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_partials_avx2.lo `test -f 'core_partials_avx2.c' || echo './'`core_partials_avx2.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_derivatives_avx2.lo `test -f 'core_derivatives_avx2.c' || echo './'`core_derivatives_avx2.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fast_parsimony.c  -fPIC -DPIC -o .libs/libpll_la-fast_parsimony.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c stepwise.c  -fPIC -DPIC -o .libs/libpll_la-stepwise.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_partials_avx2.c  -fPIC -DPIC -o .libs/libsimd_avx2_la-core_partials_avx2.o
+/build/libpll-0.3.2/src/parse_rtree.y: warning: fix-its can be applied.  Rerun with option '--update'. [-Wother]
+updating parse_utree.h
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-hardware.lo `test -f 'hardware.c' || echo './'`hardware.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c random.c  -fPIC -DPIC -o .libs/libpll_la-random.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c phylip.c  -fPIC -DPIC -o .libs/libpll_la-phylip.o
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_partials_avx2.lo `test -f 'core_partials_avx2.c' || echo './'`core_partials_avx2.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_derivatives_avx2.lo `test -f 'core_derivatives_avx2.c' || echo './'`core_derivatives_avx2.c
+updating parse_rtree.h
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_pmatrix_avx2.lo `test -f 'core_pmatrix_avx2.c' || echo './'`core_pmatrix_avx2.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_likelihood_avx2.lo `test -f 'core_likelihood_avx2.c' || echo './'`core_likelihood_avx2.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c hardware.c  -fPIC -DPIC -o .libs/libpll_la-hardware.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_partials_avx2.c  -fPIC -DPIC -o .libs/libsimd_avx2_la-core_partials_avx2.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_derivatives_avx2.c  -fPIC -DPIC -o .libs/libsimd_avx2_la-core_derivatives_avx2.o
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_pmatrix_avx2.lo `test -f 'core_pmatrix_avx2.c' || echo './'`core_pmatrix_avx2.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_pmatrix_avx2.c  -fPIC -DPIC -o .libs/libsimd_avx2_la-core_pmatrix_avx2.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parsimony.c -o libpll_la-parsimony.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_pmatrix.c -o libpll_la-core_pmatrix.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_likelihood_avx2.lo `test -f 'core_likelihood_avx2.c' || echo './'`core_likelihood_avx2.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_partials.c -o libpll_la-core_partials.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_likelihood_avx2.c  -fPIC -DPIC -o .libs/libsimd_avx2_la-core_likelihood_avx2.o
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-fast_parsimony_avx2.lo `test -f 'fast_parsimony_avx2.c' || echo './'`fast_parsimony_avx2.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_partials_avx.lo `test -f 'core_partials_avx.c' || echo './'`core_partials_avx.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c hardware.c -o libpll_la-hardware.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c random.c -o libpll_la-random.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-fast_parsimony_avx2.lo `test -f 'fast_parsimony_avx2.c' || echo './'`fast_parsimony_avx2.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_derivatives.c -o libpll_la-core_derivatives.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c stepwise.c -o libpll_la-stepwise.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_likelihood.c -o libpll_la-core_likelihood.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c fast_parsimony_avx2.c  -fPIC -DPIC -o .libs/libsimd_avx2_la-fast_parsimony_avx2.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c phylip.c -o libpll_la-phylip.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_partials_avx2.c -o libsimd_avx2_la-core_partials_avx2.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_partials_avx.lo `test -f 'core_partials_avx.c' || echo './'`core_partials_avx.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_pmatrix_avx2.c -o libsimd_avx2_la-core_pmatrix_avx2.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_derivatives_avx.lo `test -f 'core_derivatives_avx.c' || echo './'`core_derivatives_avx.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_partials_avx.c  -fPIC -DPIC -o .libs/libsimd_avx_la-core_partials_avx.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fast_parsimony.c -o libpll_la-fast_parsimony.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c random.c -o libpll_la-random.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c stepwise.c -o libpll_la-stepwise.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_derivatives_avx.lo `test -f 'core_derivatives_avx.c' || echo './'`core_derivatives_avx.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_derivatives.c -o libpll_la-core_derivatives.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_partials.c -o libpll_la-core_partials.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_derivatives_avx.c  -fPIC -DPIC -o .libs/libsimd_avx_la-core_derivatives_avx.o
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_pmatrix_avx.lo `test -f 'core_pmatrix_avx.c' || echo './'`core_pmatrix_avx.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_derivatives_avx2.c -o libsimd_avx2_la-core_derivatives_avx2.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c phylip.c -o libpll_la-phylip.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_likelihood.c -o libpll_la-core_likelihood.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_pmatrix_avx2.c -o libsimd_avx2_la-core_pmatrix_avx2.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_pmatrix_avx.lo `test -f 'core_pmatrix_avx.c' || echo './'`core_pmatrix_avx.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_partials_avx2.c -o libsimd_avx2_la-core_partials_avx2.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_likelihood_avx2.c -o libsimd_avx2_la-core_likelihood_avx2.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_likelihood_avx.lo `test -f 'core_likelihood_avx.c' || echo './'`core_likelihood_avx.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_pmatrix_avx.c  -fPIC -DPIC -o .libs/libsimd_avx_la-core_pmatrix_avx.o
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_likelihood_avx.lo `test -f 'core_likelihood_avx.c' || echo './'`core_likelihood_avx.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-fast_parsimony_avx.lo `test -f 'fast_parsimony_avx.c' || echo './'`fast_parsimony_avx.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_partials_sse.lo `test -f 'core_partials_sse.c' || echo './'`core_partials_sse.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_likelihood_avx.c  -fPIC -DPIC -o .libs/libsimd_avx_la-core_likelihood_avx.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_likelihood_avx2.c -o libsimd_avx2_la-core_likelihood_avx2.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_derivatives_avx2.c -o libsimd_avx2_la-core_derivatives_avx2.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-fast_parsimony_avx.lo `test -f 'fast_parsimony_avx.c' || echo './'`fast_parsimony_avx.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c fast_parsimony_avx2.c -o libsimd_avx2_la-fast_parsimony_avx2.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c fast_parsimony_avx.c  -fPIC -DPIC -o .libs/libsimd_avx_la-fast_parsimony_avx.o
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_partials_sse.lo `test -f 'core_partials_sse.c' || echo './'`core_partials_sse.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_partials_sse.c  -fPIC -DPIC -o .libs/libsimd_sse_la-core_partials_sse.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c fast_parsimony_avx2.c -o libsimd_avx2_la-fast_parsimony_avx2.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_derivatives_sse.lo `test -f 'core_derivatives_sse.c' || echo './'`core_derivatives_sse.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_likelihood_sse.lo `test -f 'core_likelihood_sse.c' || echo './'`core_likelihood_sse.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_derivatives_sse.lo `test -f 'core_derivatives_sse.c' || echo './'`core_derivatives_sse.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_likelihood_sse.lo `test -f 'core_likelihood_sse.c' || echo './'`core_likelihood_sse.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_pmatrix_sse.lo `test -f 'core_pmatrix_sse.c' || echo './'`core_pmatrix_sse.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_derivatives_sse.c  -fPIC -DPIC -o .libs/libsimd_sse_la-core_derivatives_sse.o
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_pmatrix_sse.lo `test -f 'core_pmatrix_sse.c' || echo './'`core_pmatrix_sse.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-fast_parsimony_sse.lo `test -f 'fast_parsimony_sse.c' || echo './'`fast_parsimony_sse.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_likelihood_sse.c  -fPIC -DPIC -o .libs/libsimd_sse_la-core_likelihood_sse.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_pmatrix_sse.c  -fPIC -DPIC -o .libs/libsimd_sse_la-core_pmatrix_sse.o
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parse_utree.lo `test -f 'parse_utree.c' || echo './'`parse_utree.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-fast_parsimony_sse.lo `test -f 'fast_parsimony_sse.c' || echo './'`fast_parsimony_sse.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parse_utree.lo `test -f 'parse_utree.c' || echo './'`parse_utree.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parse_rtree.lo `test -f 'parse_rtree.c' || echo './'`parse_rtree.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_utree.lo `test -f 'lex_utree.c' || echo './'`lex_utree.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c fast_parsimony_sse.c  -fPIC -DPIC -o .libs/libsimd_sse_la-fast_parsimony_sse.o
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parse_rtree.lo `test -f 'parse_rtree.c' || echo './'`parse_rtree.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_pmatrix_avx.c -o libsimd_avx_la-core_pmatrix_avx.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_utree.c  -fPIC -DPIC -o .libs/libpll_la-parse_utree.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_rtree.c  -fPIC -DPIC -o .libs/libpll_la-parse_rtree.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c fast_parsimony_avx.c -o libsimd_avx_la-fast_parsimony_avx.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_utree.lo `test -f 'lex_utree.c' || echo './'`lex_utree.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c  -fPIC -DPIC -o .libs/libpll_la-lex_utree.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_partials_sse.c -o libsimd_sse_la-core_partials_sse.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_utree.c  -fPIC -DPIC -o .libs/libpll_la-parse_utree.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_partials_avx.c -o libsimd_avx_la-core_partials_avx.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_rtree.lo `test -f 'lex_rtree.c' || echo './'`lex_rtree.c
-/bin/bash ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g  -Wl,-z,relro -Wl,-z,now -o libsimd_avx2.la  libsimd_avx2_la-core_partials_avx2.lo libsimd_avx2_la-core_derivatives_avx2.lo libsimd_avx2_la-core_pmatrix_avx2.lo libsimd_avx2_la-core_likelihood_avx2.lo libsimd_avx2_la-fast_parsimony_avx2.lo  -lm 
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_pmatrix_sse.c -o libsimd_sse_la-core_pmatrix_sse.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_rtree.lo `test -f 'lex_rtree.c' || echo './'`lex_rtree.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c  -fPIC -DPIC -o .libs/libpll_la-lex_utree.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_pmatrix_avx.c -o libsimd_avx_la-core_pmatrix_avx.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c fast_parsimony_avx.c -o libsimd_avx_la-fast_parsimony_avx.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c  -fPIC -DPIC -o .libs/libpll_la-lex_rtree.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_pmatrix_sse.c -o libsimd_sse_la-core_pmatrix_sse.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_likelihood_avx.c -o libsimd_avx_la-core_likelihood_avx.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_derivatives_avx.c -o libsimd_avx_la-core_derivatives_avx.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g  -Wl,-z,relro -Wl,-z,now -o libsimd_avx2.la  libsimd_avx2_la-core_partials_avx2.lo libsimd_avx2_la-core_derivatives_avx2.lo libsimd_avx2_la-core_pmatrix_avx2.lo libsimd_avx2_la-core_likelihood_avx2.lo libsimd_avx2_la-fast_parsimony_avx2.lo  -lm 
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_derivatives_sse.c -o libsimd_sse_la-core_derivatives_sse.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_partials_sse.c -o libsimd_sse_la-core_partials_sse.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c fast_parsimony_sse.c -o libsimd_sse_la-fast_parsimony_sse.o >/dev/null 2>&1
 libtool: link: ar cru .libs/libsimd_avx2.a .libs/libsimd_avx2_la-core_partials_avx2.o .libs/libsimd_avx2_la-core_derivatives_avx2.o .libs/libsimd_avx2_la-core_pmatrix_avx2.o .libs/libsimd_avx2_la-core_likelihood_avx2.o .libs/libsimd_avx2_la-fast_parsimony_avx2.o 
 ar: `u' modifier ignored since `D' is the default (see `U')
 libtool: link: ranlib .libs/libsimd_avx2.a
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_derivatives_sse.c -o libsimd_sse_la-core_derivatives_sse.o >/dev/null 2>&1
 libtool: link: ( cd ".libs" && rm -f "libsimd_avx2.la" && ln -s "../libsimd_avx2.la" "libsimd_avx2.la" )
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_likelihood_avx.c -o libsimd_avx_la-core_likelihood_avx.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_likelihood_sse.c -o libsimd_sse_la-core_likelihood_sse.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_utree.c -o libpll_la-parse_utree.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c -o libpll_la-lex_utree.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c -o libpll_la-lex_rtree.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g  -Wl,-z,relro -Wl,-z,now -o libsimd_sse.la  libsimd_sse_la-core_partials_sse.lo libsimd_sse_la-core_derivatives_sse.lo libsimd_sse_la-core_likelihood_sse.lo libsimd_sse_la-core_pmatrix_sse.lo libsimd_sse_la-fast_parsimony_sse.lo  -lm 
-/bin/bash ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g  -Wl,-z,relro -Wl,-z,now -o libsimd_avx.la  libsimd_avx_la-core_partials_avx.lo libsimd_avx_la-core_derivatives_avx.lo libsimd_avx_la-core_pmatrix_avx.lo libsimd_avx_la-core_likelihood_avx.lo libsimd_avx_la-fast_parsimony_avx.lo  -lm 
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_utree.c -o libpll_la-parse_utree.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g  -Wl,-z,relro -Wl,-z,now -o libsimd_sse.la  libsimd_sse_la-core_partials_sse.lo libsimd_sse_la-core_derivatives_sse.lo libsimd_sse_la-core_likelihood_sse.lo libsimd_sse_la-core_pmatrix_sse.lo libsimd_sse_la-fast_parsimony_sse.lo  -lm 
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_rtree.c -o libpll_la-parse_rtree.o >/dev/null 2>&1
 libtool: link: ar cru .libs/libsimd_sse.a .libs/libsimd_sse_la-core_partials_sse.o .libs/libsimd_sse_la-core_derivatives_sse.o .libs/libsimd_sse_la-core_likelihood_sse.o .libs/libsimd_sse_la-core_pmatrix_sse.o .libs/libsimd_sse_la-fast_parsimony_sse.o 
+/bin/sh ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g  -Wl,-z,relro -Wl,-z,now -o libsimd_avx.la  libsimd_avx_la-core_partials_avx.lo libsimd_avx_la-core_derivatives_avx.lo libsimd_avx_la-core_pmatrix_avx.lo libsimd_avx_la-core_likelihood_avx.lo libsimd_avx_la-fast_parsimony_avx.lo  -lm 
 ar: `u' modifier ignored since `D' is the default (see `U')
 libtool: link: ranlib .libs/libsimd_sse.a
 libtool: link: ( cd ".libs" && rm -f "libsimd_sse.la" && ln -s "../libsimd_sse.la" "libsimd_sse.la" )
@@ -788,7 +822,7 @@
 ar: `u' modifier ignored since `D' is the default (see `U')
 libtool: link: ranlib .libs/libsimd_avx.a
 libtool: link: ( cd ".libs" && rm -f "libsimd_avx.la" && ln -s "../libsimd_avx.la" "libsimd_avx.la" )
-/bin/bash ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libpll.la -rpath /usr/lib/x86_64-linux-gnu libpll_la-fasta.lo libpll_la-gamma.lo libpll_la-likelihood.lo libpll_la-list.lo libpll_la-maps.lo libpll_la-models.lo libpll_la-pll.lo libpll_la-output.lo libpll_la-utree.lo libpll_la-rtree.lo libpll_la-derivatives.lo libpll_la-partials.lo libpll_la-compress.lo libpll_la-utree_moves.lo libpll_la-utree_svg.lo libpll_la-parsimony.lo libpll_la-core_derivatives.lo libpll_la-core_partials.lo libpll_la-core_pmatrix.lo libpll_la-core_likelihood.lo libpll_la-parse_utree.lo libpll_la-parse_rtree.lo libpll_la-lex_utree.lo libpll_la-lex_rtree.lo libpll_la-fast_parsimony.lo libpll_la-stepwise.lo libpll_la-random.lo libpll_la-phylip.lo libpll_la-hardware.lo libsimd_avx2.la libsimd_avx.la libsimd_sse.la -lm 
+/bin/sh ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libpll.la -rpath /usr/lib/x86_64-linux-gnu libpll_la-fasta.lo libpll_la-gamma.lo libpll_la-likelihood.lo libpll_la-list.lo libpll_la-maps.lo libpll_la-models.lo libpll_la-pll.lo libpll_la-output.lo libpll_la-utree.lo libpll_la-rtree.lo libpll_la-derivatives.lo libpll_la-partials.lo libpll_la-compress.lo libpll_la-utree_moves.lo libpll_la-utree_svg.lo libpll_la-parsimony.lo libpll_la-core_derivatives.lo libpll_la-core_partials.lo libpll_la-core_pmatrix.lo libpll_la-core_likelihood.lo libpll_la-parse_utree.lo libpll_la-parse_rtree.lo libpll_la-lex_utree.lo libpll_la-lex_rtree.lo libpll_la-fast_parsimony.lo libpll_la-stepwise.lo libpll_la-random.lo libpll_la-phylip.lo libpll_la-hardware.lo libsimd_avx2.la libsimd_avx.la libsimd_sse.la -lm 
 libtool: link: gcc -shared  -fPIC -DPIC  .libs/libpll_la-fasta.o .libs/libpll_la-gamma.o .libs/libpll_la-likelihood.o .libs/libpll_la-list.o .libs/libpll_la-maps.o .libs/libpll_la-models.o .libs/libpll_la-pll.o .libs/libpll_la-output.o .libs/libpll_la-utree.o .libs/libpll_la-rtree.o .libs/libpll_la-derivatives.o .libs/libpll_la-partials.o .libs/libpll_la-compress.o .libs/libpll_la-utree_moves.o .libs/libpll_la-utree_svg.o .libs/libpll_la-parsimony.o .libs/libpll_la-core_derivatives.o .libs/libpll_la-core_partials.o .libs/libpll_la-core_pmatrix.o .libs/libpll_la-core_likelihood.o .libs/libpll_la-parse_utree.o .libs/libpll_la-parse_rtree.o .libs/libpll_la-lex_utree.o .libs/libpll_la-lex_rtree.o .libs/libpll_la-fast_parsimony.o .libs/libpll_la-stepwise.o .libs/libpll_la-random.o .libs/libpll_la-phylip.o .libs/libpll_la-hardware.o  -Wl,--whole-archive ./.libs/libsimd_avx2.a ./.libs/libsimd_avx.a ./.libs/libsimd_sse.a -Wl,--no-whole-archive  -lm  -O3 -g -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,libpll.so.0 -o .libs/libpll.so.0.0.0
 libtool: link: (cd ".libs" && rm -f "libpll.so.0" && ln -s "libpll.so.0.0.0" "libpll.so.0")
 libtool: link: (cd ".libs" && rm -f "libpll.so" && ln -s "libpll.so.0.0.0" "libpll.so")
@@ -814,7 +848,7 @@
 make[2]: Leaving directory '/build/libpll-0.3.2'
 make[1]: Leaving directory '/build/libpll-0.3.2'
    dh_auto_test
-	make -j15 check VERBOSE=1
+	make -j16 check VERBOSE=1
 make[1]: Entering directory '/build/libpll-0.3.2'
 Making check in src
 make[2]: Entering directory '/build/libpll-0.3.2/src'
@@ -843,7 +877,7 @@
 make[2]: Entering directory '/build/libpll-0.3.2/src'
 make[3]: Entering directory '/build/libpll-0.3.2/src'
  /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu'
- /bin/bash ../libtool   --mode=install /usr/bin/install -c   libpll.la '/build/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu'
+ /bin/sh ../libtool   --mode=install /usr/bin/install -c   libpll.la '/build/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu'
 libtool: install: /usr/bin/install -c .libs/libpll.so.0.0.0 /build/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libpll.so.0.0.0
 libtool: install: (cd /build/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libpll.so.0.0.0 libpll.so.0 || { rm -f libpll.so.0 && ln -s libpll.so.0.0.0 libpll.so.0; }; })
 libtool: install: (cd /build/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libpll.so.0.0.0 libpll.so || { rm -f libpll.so && ln -s libpll.so.0.0.0 libpll.so; }; })
@@ -948,20 +982,22 @@
    dh_md5sums
    dh_builddeb
 dpkg-deb: building package 'libpll-dev' in '../libpll-dev_0.3.2-2_amd64.deb'.
-dpkg-deb: building package 'libpll0-dbgsym' in '../libpll0-dbgsym_0.3.2-2_amd64.deb'.
 dpkg-deb: building package 'libpll0' in '../libpll0_0.3.2-2_amd64.deb'.
+dpkg-deb: building package 'libpll0-dbgsym' in '../libpll0-dbgsym_0.3.2-2_amd64.deb'.
  dpkg-genbuildinfo --build=binary
  dpkg-genchanges --build=binary >../libpll_0.3.2-2_amd64.changes
 dpkg-genchanges: info: binary-only upload (no source code included)
  dpkg-source --after-build .
 dpkg-buildpackage: info: binary-only upload (no source included)
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/61353/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/61353/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/42841 and its subdirectories
-I: Current time: Sun Jun 20 04:18:15 -12 2021
-I: pbuilder-time-stamp: 1624205895
+I: removing directory /srv/workspace/pbuilder/61353 and its subdirectories
+I: Current time: Sun Jul 24 12:44:55 +14 2022
+I: pbuilder-time-stamp: 1658616295