Diff of the two buildlogs: -- --- b1/build.log 2021-12-04 18:08:11.238758310 +0000 +++ b2/build.log 2021-12-04 18:25:02.004141406 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Jan 6 12:07:48 -12 2023 -I: pbuilder-time-stamp: 1673050068 +I: Current time: Sun Dec 5 08:08:17 +14 2021 +I: pbuilder-time-stamp: 1638641297 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Mar 7 18:59:52 2019 -12 +gpgv: Signature made Fri Mar 8 20:59:52 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,136 +30,170 @@ dpkg-source: info: applying 20_set_potentials_path.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/305433/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/54151/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/54151/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/54151/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='1631780aae0d4e85a54ef504f4c2766a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='305433' - PS1='# ' - PS2='> ' + INVOCATION_ID=b9d7d626ca6944bba0d3cffd3543f1b9 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=54151 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.jSaMTm2LHr/pbuilderrc_xVSP --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.jSaMTm2LHr/b1 --logfile b1/build.log lammps_0~20181211.gitad1b1897d+dfsg1-2.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.jSaMTm2LHr/pbuilderrc_h61U --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.jSaMTm2LHr/b2 --logfile b2/build.log lammps_0~20181211.gitad1b1897d+dfsg1-2.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos15-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Dec 10 16:20 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/305433/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Dec 5 08:08 sh -> bash + lrwxrwxrwx 1 root root 4 Nov 8 11:58 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/54151/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -795,7 +829,7 @@ Get: 565 http://deb.debian.org/debian buster/main amd64 texlive-latex-base all 2018.20190227-2 [984 kB] Get: 566 http://deb.debian.org/debian buster/main amd64 texlive-latex-recommended all 2018.20190227-2 [15.2 MB] Get: 567 http://deb.debian.org/debian buster/main amd64 voro++-dev amd64 0.4.6+dfsg1-3 [146 kB] -Fetched 386 MB in 7s (58.6 MB/s) +Fetched 386 MB in 11s (34.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -3125,7 +3159,8 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/lammps-0~20181211.gitad1b1897d+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lammps_0~20181211.gitad1b1897d+dfsg1-2_source.changes +hostname: Name or service not known +I: Running cd /build/lammps-0~20181211.gitad1b1897d+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lammps_0~20181211.gitad1b1897d+dfsg1-2_source.changes dpkg-buildpackage: info: source package lammps dpkg-buildpackage: info: source version 0~20181211.gitad1b1897d+dfsg1-2 dpkg-buildpackage: info: source distribution unstable @@ -5148,11 +5183,11 @@ Converting write_dump.txt ... Converting write_restart.txt ... PAGES: 2442 - BYTES: 16533354 + BYTES: 16533365 make[2]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/doc' make[1]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1' dh_auto_build -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build -Nlammps-doc -Nlammps-data - cd debian/build && make -j16 "INSTALL=install --strip-program=true" + cd debian/build && make -j15 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' /usr/bin/cmake -S"/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" -B"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/progress.marks" @@ -5163,9 +5198,9 @@ make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/depend make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend +make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake" --color= -make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/depend make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/h5md.dir/DependInfo.cmake" --color= @@ -5181,157 +5216,155 @@ cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/atc.dir/DependInfo.cmake" --color= Scanning dependencies of target meam make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/build -make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -Scanning dependencies of target h5md Scanning dependencies of target ocl_get_devices -make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build +make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/build make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build -Scanning dependencies of target awpmd make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +Scanning dependencies of target awpmd make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build +Scanning dependencies of target h5md +make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -[ 0%] Building C object CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/fm_exp.c.o [ 0%] Building Fortran object CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_data.F.o -/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_dens_init.F" -o "CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_dens_init.F.o" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:35, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 0%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/fixedpoint.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/fixedpoint.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/fixedpoint.cpp" +[ 0%] Building Fortran object CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_force.F.o +/usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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dependencies of target atc make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +[ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/matrixfun.cpp.o make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build -[ 2%] Building Fortran object CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_param.F.o -/usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingEnergy.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingEnergy.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemsobject.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemsobject.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemsobject.cpp" +Scanning dependencies of target gpu [ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemstreenode.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemstreenode.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemstreenode.cpp" make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -[ 2%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMass.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 3%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/vect6.cpp.o +[ 3%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/virtualcolmatrix.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/virtualmatrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/virtualmatrix.cpp" +[ 3%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/virtualrowmatrix.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp" +[ 3%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp" +[ 3%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5364,22 +5413,6 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 3%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/workspace.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/workspace.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/workspace.cpp" -[ 3%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5390,6 +5423,8 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5410,6 +5445,19 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5420,6 +5468,12 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 4%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.cpp" +[ 4%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp" +make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +[ 5%] Built target awpmd +[ 5%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CauchyBorn.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CauchyBorn.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CauchyBorn.cpp" +[ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5477,6 +5535,8 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 6%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CbPotential.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CbPotential.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CbPotential.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5488,6 +5548,14 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 6%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp" +[ 6%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5499,22 +5567,12 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp" -[ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5527,6 +5585,8 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5534,8 +5594,7 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ @@ -5546,10 +5605,13 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronChargeDensity.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronChargeDensity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronChargeDensity.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5557,11 +5619,20 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronDragPower.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronDragPower.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronDragPower.cpp" +[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5569,7 +5640,8 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ @@ -5607,14 +5679,18 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp.o +[ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp" +[ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatCapacity.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5626,8 +5702,8 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp" +[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5639,42 +5715,21 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp" -[ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 6%] Linking CXX static library libawpmd.a -/usr/bin/cmake -P CMakeFiles/awpmd.dir/cmake_clean_target.cmake -[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp" -/usr/bin/cmake -E cmake_link_script CMakeFiles/awpmd.dir/link.txt --verbose=1 -[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp" -[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronPhononExchange.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronPhononExchange.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5682,7 +5737,7 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ @@ -5692,11 +5747,29 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.cpp" +[ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp" +[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5715,7 +5788,7 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ @@ -5724,23 +5797,29 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 8%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 9%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp" +[ 9%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Interpolate.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Interpolate.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Interpolate.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5752,6 +5831,16 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 9%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp" +[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp" +[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5763,18 +5852,7 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp" +[ 9%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5786,7 +5864,9 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp" +[ 9%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5798,7 +5878,6 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5810,8 +5889,8 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp" +[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5823,8 +5902,14 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp" +[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5836,6 +5921,8 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 9%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Function.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Function.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Function.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5847,8 +5934,8 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp" +[ 9%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5861,10 +5948,6 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp" -[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5877,8 +5960,8 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp" +[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5890,6 +5973,10 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp" +[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5899,6 +5986,14 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp" +[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5906,18 +6001,10 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp" -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5925,14 +6012,10 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp" -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5955,6 +6038,14 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/InterscaleOperators.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/InterscaleOperators.cpp" +[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5966,8 +6057,14 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp" +[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp" +[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp" +[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KernelFunction.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KernelFunction.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KernelFunction.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5986,12 +6083,10 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5999,10 +6094,24 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp" +[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp" +[ 11%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp" +[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp" +[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6010,12 +6119,10 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6023,16 +6130,10 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp" -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6044,10 +6145,8 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6059,8 +6158,8 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp" +[ 11%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6072,8 +6171,16 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Material.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Material.cpp" +[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6085,8 +6192,6 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6098,8 +6203,6 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6111,6 +6214,10 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp" +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6122,8 +6229,12 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 9%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp" +[ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.cpp" +[ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MeshReader.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MeshReader.cpp" +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6135,10 +6246,12 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp.o +[ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MoleculeSet.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp" +[ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6150,8 +6263,6 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6159,14 +6270,16 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp" -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6174,14 +6287,18 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 9%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/BodyForce.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/BodyForce.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/BodyForce.cpp" -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParDiagonalMatrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParDiagonalMatrix.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6204,8 +6321,6 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6217,10 +6332,16 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp" -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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function 'void ATC::OutputManager::read_restart_file(std::__cxx11::string, ATC::RESTART_LIST*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp:164:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&myVal,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6232,8 +6353,10 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp" +[ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp" +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o +/usr/bin/c++ 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6245,8 +6368,14 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp" +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6258,8 +6387,10 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp" +[ 13%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PolynomialSolver.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PolynomialSolver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PolynomialSolver.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6267,10 +6398,12 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6278,12 +6411,18 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp" +[ 13%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PrescribedDataManager.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Quadrature.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Quadrature.cpp" +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp.o +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Stress.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Stress.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6308,12 +6453,6 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp" -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6336,12 +6475,18 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o +[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.cpp" +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp" -[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6375,10 +6520,8 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6401,14 +6544,16 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o +[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeFilter.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp" -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6431,6 +6576,8 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6442,10 +6589,6 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp" -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6457,6 +6600,10 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.cpp" +[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6468,10 +6615,14 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp.o -[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Vector.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Vector.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6483,6 +6634,10 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 15%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp" +[ 15%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6494,36 +6649,34 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp.o +[ 15%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ViscousStress.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ViscousStress.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ViscousStress.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp" -[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp" +[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6535,6 +6688,8 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6544,6 +6699,14 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationDiffusion.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationDiffusion.cpp" +[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:35, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_kernel.h:27, @@ -6552,14 +6715,10 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CbPotential.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CbPotential.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CbPotential.cpp" -[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp.o +[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6570,20 +6729,17 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp" -[ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp:27: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ @@ -6592,17 +6748,20 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp:27: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft_ext.cpp" -[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp" +[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationMassDiffusion.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp" +[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationPhononTemperature.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationSchrodinger.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationSchrodinger.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6638,8 +6803,18 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp.o +[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp" +[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp" +[ 17%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6647,10 +6822,12 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 17%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6658,12 +6835,10 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6671,14 +6846,10 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp" -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6686,14 +6857,10 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 13%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronChargeDensity.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronChargeDensity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronChargeDensity.cpp" -[ 13%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronDragPower.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronDragPower.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronDragPower.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6705,9 +6872,7 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp.o +[ 17%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6746,21 +6911,27 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 17%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp" +[ 17%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 17%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6783,10 +6954,6 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp" -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6798,8 +6965,6 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6811,6 +6976,8 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 17%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6822,10 +6989,6 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6837,7 +7000,9 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o +[ 17%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp" +[ 17%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON 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Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp.o +[ 18%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp" -[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6865,12 +7028,8 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp" -[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatCapacity.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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"CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatFlux.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatFlux.cpp" +[ 18%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6882,7 +7041,6 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronPhononExchange.cpp.o In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6894,7 +7052,6 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronPhononExchange.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronPhononExchange.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -6906,140 +7063,18 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.cpp" -[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp" -[ 15%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KernelFunction.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KernelFunction.cpp" -[ 15%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PaqAtcUtility.cpp" -[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParDiagonalMatrix.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParDiagonalMatrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParDiagonalMatrix.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp: In member function 'void ATC::OutputManager::read_restart_file(std::__cxx11::string, ATC::RESTART_LIST*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp:164:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&myVal,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 16%] Building CXX object 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-DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PolynomialSolver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PolynomialSolver.cpp" -[ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PrescribedDataManager.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Stress.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Stress.cpp" -[ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_tri.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_tri.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp: In member function 'virtual void LAMMPS_NS::AngleZero::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp:133:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&theta0[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp: In member function 'virtual void LAMMPS_NS::AngleHybrid::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp:338:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); @@ -7095,6 +7124,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp:350:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp: In member function 'virtual void LAMMPS_NS::AngleZero::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp:133:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&theta0[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 19%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_tri.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_tri.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_tri.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/balance.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/balance.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/balance.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/body.cpp.o @@ -7125,14 +7160,14 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_hybrid.cpp:351:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_zero.cpp: In member function 'virtual void LAMMPS_NS::BondZero::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_zero.cpp:131:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&r0[1],sizeof(double),atom->nbondtypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm_tiled.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" 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-c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm_tiled.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_zero.cpp: In member function 'virtual void LAMMPS_NS::BondZero::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_zero.cpp:131:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&r0[1],sizeof(double),atom->nbondtypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_adf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_adf.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_aggregate_atom.cpp.o @@ -7154,9 +7189,9 @@ [ 20%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_chunk_spread_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_dihedral.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_dihedral.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_dihedral_local.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_dihedral_local.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_dihedral_local.cpp" @@ -7194,8 +7229,8 @@ [ 22%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_hexorder_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_inertia_chunk.cpp" @@ -7203,20 +7238,20 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_ke.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_ke.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_ke_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_orientorder_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_orientorder_atom.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_pair.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_pe_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_pe_atom.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_pressure.cpp.o @@ -7236,8 +7271,8 @@ [ 23%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_reduce_region.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_reduce_region.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_reduce_region.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_slice.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_movie.cpp" +[ 26%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_xyz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_chunk.cpp: In member function 'virtual void LAMMPS_NS::FixAveChunk::end_of_step()': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_chunk.cpp:1057:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] + if (fileend > 0) ftruncate(fileno(fp),fileend); + ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp: In member function 'virtual void LAMMPS_NS::FixAveHistoWeight::end_of_step()': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp:499:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] + if (fileend > 0) ftruncate(fileno(fp),fileend); + ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_aveforce.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_aveforce.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_balance.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_balance.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_balance.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_chunk.cpp: In member function 'virtual void LAMMPS_NS::FixAveChunk::end_of_step()': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_chunk.cpp:1057:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp: In member function 'virtual void LAMMPS_NS::FixAveHisto::end_of_step()': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp:828:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -[ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_box_relax.cpp.o /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_correlate.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_correlate.cpp:537:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +[ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_box_relax.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_deform.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_deform.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp: In member function 'virtual void LAMMPS_NS::FixAveHistoWeight::end_of_step()': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp:499:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] - if (fileend > 0) ftruncate(fileno(fp),fileend); - ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp:700:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); @@ -7369,12 +7404,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp:911:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +[ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_controller.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_controller.cpp" +[ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_deform.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_deform.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_deform.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_deprecated.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_deprecated.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp: In member function 'virtual void LAMMPS_NS::FixAveHisto::end_of_step()': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp:828:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] - if (fileend > 0) ftruncate(fileno(fp),fileend); - ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_drag.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_drag.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_drag.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_dt_reset.cpp.o @@ -7441,10 +7476,10 @@ /usr/bin/c++ -DFFT_FFTW 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_recenter.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_recenter.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_restrain.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_restrain.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_restrain.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_setforce.cpp.o @@ -7481,28 +7516,30 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_harmonic.cpp" -[ 31%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_lj1043.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_reflect.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_region.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_store.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_store.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp: In member function 'void LAMMPS_NS::Group::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:730:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&ngroup,sizeof(int),1,fp); @@ -7513,8 +7550,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:746:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(names[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 31%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_store.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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"CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_store.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_store.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_time.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp: In member function 'virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp:320:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); @@ -7547,12 +7580,14 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp:332:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 32%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/molecule.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/molecule.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/nbin.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_multi_newton.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_multi_newton.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp: In member function 'int LAMMPS_NS::Modify::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1368:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nfix_restart_global,sizeof(int),1,fp); @@ -7661,6 +7684,18 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1439:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ +[ 34%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_bin_newtoff.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:366:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:370:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&a[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:371:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&rho[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:372:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:373:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&c[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:374:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&d[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:375:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:407:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&alpha,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:408:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:409:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:410:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:411:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp" +[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp: In member function 'virtual void LAMMPS_NS::PairBeck::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:282:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -7814,94 +7893,34 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:322:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp.o 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp" -[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:365:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:369:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&a[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:370:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&rho[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:371:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:372:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&c[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:373:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&d[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:374:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:406:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&alf,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:407:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:408:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:409:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:410:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp" /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:366:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp: In member function 'virtual void LAMMPS_NS::PairBorn::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:334:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:370:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:338:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:371:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:339:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:372:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:340:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:373:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:341:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:374:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:342:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:375:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:407:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&alpha,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:408:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:409:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:410:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:411:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:343:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp: In member function 'virtual void LAMMPS_NS::PairBuck::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:312:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -7918,6 +7937,19 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:319:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp: In member function 'virtual void LAMMPS_NS::PairBorn::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:374:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:376:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:377:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tail_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp: In member function 'virtual void LAMMPS_NS::PairBuck::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); @@ -7931,60 +7963,44 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:351:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp: In member function 'virtual void LAMMPS_NS::PairBorn::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:334:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:365:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:338:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:369:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:339:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:370:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:340:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:371:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:341:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:372:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:342:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:373:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:343:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp: In member function 'virtual void LAMMPS_NS::PairBorn::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:374:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:374:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:406:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&alf,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:407:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:408:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:376:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:377:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tail_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCut::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:249:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_deprecated.cpp.o -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:252:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCut::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:276:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:277:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:409:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:278:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:410:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_deprecated.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_deprecated.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:366:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -8020,6 +8036,23 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:409:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCut::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:249:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:252:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCut::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:276:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:277:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:278:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDebye::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp:153:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); @@ -8033,8 +8066,29 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp:156:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulWolf::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:254:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulWolf::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:278:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&alf,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:279:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:280:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_deprecated.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" 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"CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_deprecated.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_deprecated.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp" +[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDSF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp:257:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -8052,23 +8106,14 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp:284:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulWolf::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:254:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulWolf::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:278:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&alf,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:279:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:280:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid_overlay.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid_overlay.cpp" +[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp: In member function 'virtual void LAMMPS_NS::PairDPD::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:319:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -8095,26 +8140,11 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:356:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp: In member function 'virtual void LAMMPS_NS::PairDPDTstat::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:234:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -8125,6 +8155,7 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:239:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp: In member function 'virtual void LAMMPS_NS::PairDPDTstat::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:267:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&t_start,sizeof(double),1,fp); @@ -8141,10 +8172,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:271:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp" -[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp: In member function 'virtual void LAMMPS_NS::PairGauss::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:285:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -8168,8 +8197,32 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:612:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:616:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:617:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:618:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:647:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:648:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:649:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:650:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tail_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp: In member function 'virtual void LAMMPS_NS::PairHybrid::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:668:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); @@ -8192,6 +8245,28 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:705:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(special_coul[m],sizeof(double),4,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:283:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:287:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:288:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:289:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_inner[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:290:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:317:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:357:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -8224,6 +8299,28 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDebye::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:174:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:175:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:176:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&kappa,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:177:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:178:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" 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-DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:606:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -8250,68 +8347,43 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:644:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:612:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp" +[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpand::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:328:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:616:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:332:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:617:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:333:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:618:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:334:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&shift[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:335:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:647:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpand::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:364:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:648:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:365:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:649:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:366:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:650:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:367:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDebye::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:174:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:175:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:176:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&kappa,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:177:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:178:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:283:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:287:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:288:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:289:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_inner[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:290:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:317:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:380:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -8344,6 +8416,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:421:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:375:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -8357,6 +8431,22 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:381:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:345:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:349:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:350:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:351:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_inner[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:352:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:412:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alf,sizeof(double),1,fp); @@ -8376,51 +8466,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:417:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpand::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:328:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:332:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:333:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:334:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&shift[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:335:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpand::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:364:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:365:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:366:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:367:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tail_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:345:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:349:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:350:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:351:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_inner[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:352:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:382:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); @@ -8434,16 +8479,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:385:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart(FILE*)': @@ -8466,35 +8501,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:356:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:360:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:361:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:362:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_inner[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:363:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:393:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_inner_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:396:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart(FILE*)': @@ -8526,12 +8532,32 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:422:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp" -[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp" -[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zbl.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zbl.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zbl.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp: In member function 'virtual void LAMMPS_NS::PairMorse::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:269:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:273:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&d0[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:274:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&alpha[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:275:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&r0[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:276:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp: In member function 'virtual void LAMMPS_NS::PairMorse::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:304:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:305:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:306:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp: In member function 'virtual void LAMMPS_NS::PairMIECut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:633:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -8564,55 +8590,43 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:675:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp: In member function 'virtual void LAMMPS_NS::PairMorse::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:269:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:356:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:273:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&d0[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:274:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&alpha[i][j],sizeof(double),1,fp); +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:360:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:361:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:275:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&r0[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:276:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:362:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_inner[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:363:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp: In member function 'virtual void LAMMPS_NS::PairMorse::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:304:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:393:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_inner_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:305:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:306:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:396:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/procmap.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/procmap.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:250:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:254:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&prefactor[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:255:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:280:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/python.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/python.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/python.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp: In member function 'void LAMMPS_NS::PairTable::read_table(LAMMPS_NS::PairTable::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:378:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section @@ -8651,6 +8665,46 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:983:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tip4pflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/procmap.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/procmap.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/procmap.cpp" +[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/python.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/python.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/python.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:250:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:254:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&prefactor[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:255:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:280:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_mars.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_mars.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_mars.cpp" +[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_park.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_park.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_park.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp: In member function 'virtual void LAMMPS_NS::PairZero::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:176:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:180:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp: In member function 'virtual void LAMMPS_NS::PairZero::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:205:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:206:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&coeffflag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/rcb.cpp.o /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp: In member function 'virtual void LAMMPS_NS::PairUFM::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:290:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -8664,6 +8718,7 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:296:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/rcb.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/rcb.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp: In member function 'virtual void LAMMPS_NS::PairUFM::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:324:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); @@ -8697,46 +8752,24 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:291:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_mars.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_mars.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_mars.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp: In member function 'virtual void LAMMPS_NS::PairZero::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:176:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:180:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp: In member function 'virtual void LAMMPS_NS::PairZero::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:205:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:206:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&coeffflag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_park.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_cylinder.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_cylinder.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::command(int, char**)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:304:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); @@ -8784,6 +8817,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:1296:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(vec,sizeof(double),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 42%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_cylinder.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_cylinder.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_cylinder.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_union.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/replicate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/rerun.cpp" +[ 43%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reset_ids.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reset_ids.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reset_ids.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/respa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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43%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/special.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/update.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/update.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp" @@ -8830,16 +8865,12 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" 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-c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_data.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_dump.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp" -[ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_temp_asphere.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_temp_asphere.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_temp_asphere.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::next(int, char**)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp:681:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d",&nextindex); ~~~~~~^~~~~~~~~~~~~~~~~~~~ +[ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp: In member function 'void LAMMPS_NS::WriteCoeff::command(int, char**)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:115:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); // coeff @@ -8862,6 +8893,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:168:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ +[ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_erotate_asphere.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_erotate_asphere.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_erotate_asphere.cpp" +[ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_temp_asphere.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_temp_asphere.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_temp_asphere.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/fix_nh_asphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/fix_nh_asphere.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/fix_nh_asphere.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/fix_nph_asphere.cpp.o @@ -8932,6 +8967,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:517:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 45%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/compute_temp_body.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/compute_temp_body.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/compute_temp_body.cpp" +[ 45%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_nh_body.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_nh_body.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_nh_body.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp: In member function 'virtual void LAMMPS_NS::PairRESquared::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:445:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setwell[i],sizeof(int),1,fp); @@ -8958,10 +8997,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:487:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 45%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/compute_temp_body.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/compute_temp_body.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/compute_temp_body.cpp" -[ 45%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_nh_body.cpp.o -/usr/bin/c++ 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_nph_body.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_nph_body.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_npt_body.cpp.o @@ -8992,12 +9027,6 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp: In member function 'virtual void LAMMPS_NS::AngleClass2::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:376:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); @@ -9032,44 +9061,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:388:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp: In member function 'virtual void LAMMPS_NS::BondClass2::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:187:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&r0[1],sizeof(double),atom->nbondtypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:188:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k2[1],sizeof(double),atom->nbondtypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:189:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k3[1],sizeof(double),atom->nbondtypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:190:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k4[1],sizeof(double),atom->nbondtypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp: In member function 'virtual void LAMMPS_NS::ImproperClass2::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:609:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k0[1],sizeof(double),atom->nimpropertypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:610:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&chi0[1],sizeof(double),atom->nimpropertypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:612:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&aa_k1[1],sizeof(double),atom->nimpropertypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:613:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&aa_k2[1],sizeof(double),atom->nimpropertypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:614:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&aa_k3[1],sizeof(double),atom->nimpropertypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:615:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&aa_theta0_1[1],sizeof(double),atom->nimpropertypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:616:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&aa_theta0_2[1],sizeof(double),atom->nimpropertypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:617:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&aa_theta0_3[1],sizeof(double),atom->nimpropertypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp: In member function 'virtual void LAMMPS_NS::DihedralClass2::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:840:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp); @@ -9167,36 +9158,19 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:878:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bb13t_r30[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian_poly.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian_poly.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian_poly.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:310:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:314:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:315:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:316:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:345:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:346:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:347:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tail_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp: In member function 'virtual void LAMMPS_NS::BondClass2::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:187:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&r0[1],sizeof(double),atom->nbondtypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:188:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k2[1],sizeof(double),atom->nbondtypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:189:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k3[1],sizeof(double),atom->nbondtypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:190:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k4[1],sizeof(double),atom->nbondtypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:364:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -9229,6 +9203,67 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:405:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:310:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:314:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:315:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:316:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:345:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:346:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:347:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tail_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp" +[ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/fix_wall_colloid.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp: In member function 'virtual void LAMMPS_NS::ImproperClass2::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:609:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k0[1],sizeof(double),atom->nimpropertypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:610:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&chi0[1],sizeof(double),atom->nimpropertypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:612:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&aa_k1[1],sizeof(double),atom->nimpropertypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:613:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&aa_k2[1],sizeof(double),atom->nimpropertypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:614:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&aa_k3[1],sizeof(double),atom->nimpropertypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:615:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&aa_theta0_1[1],sizeof(double),atom->nimpropertypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:616:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&aa_theta0_2[1],sizeof(double),atom->nimpropertypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:617:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&aa_theta0_3[1],sizeof(double),atom->nimpropertypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian_poly.cpp.o 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart(FILE*)': @@ -9266,6 +9301,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:449:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp: In member function 'virtual void LAMMPS_NS::PairBrownian::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:610:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -9310,10 +9347,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:660:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate_poly.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate_poly.cpp" +[ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_yukawa_colloid.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_yukawa_colloid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_yukawa_colloid.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp: In member function 'virtual void LAMMPS_NS::PairColloid::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:401:31: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (comm->me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -9381,16 +9420,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:736:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate_poly.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS/dump_custom_gz.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS/dump_custom_gz.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp: In member function 'virtual void LAMMPS_NS::PairLubricateU::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1917:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -9426,6 +9459,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1961:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS/dump_custom_gz.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS/dump_xyz_gz.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/atom_vec_dipole.cpp.o @@ -9442,32 +9477,10 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_pour.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_pour.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_wall_gran.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_wall_gran.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_wall_gran.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:495:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:499:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:500:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:501:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:529:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:530:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:531:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:532:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_wall_gran_region.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hertz_history.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hertz_history.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:441:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -9526,22 +9539,42 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:390:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_wall_gran_region.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:495:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:499:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:500:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:501:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:529:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:530:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:531:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:532:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald_disp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald_disp.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d.cpp" -[ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d_wrap.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d_wrap.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d_wrap.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp: In member function 'virtual void LAMMPS_NS::PairGranHookeHistory::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:542:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -9565,6 +9598,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:573:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dampflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d_wrap.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:427:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -9627,12 +9664,21 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function 'virtual void LAMMPS_NS::FixTuneKspace::init()': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:103:23: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] + sprintf(old_acc_str,"%g",old_acc); + ^~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/c++/8/cstdio:42, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:404:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -9671,8 +9717,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:449:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function 'virtual void LAMMPS_NS::FixTuneKspace::init()': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:103:23: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] +[ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function 'void LAMMPS_NS::FixTuneKspace::store_old_kspace_settings()': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:214:23: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(old_acc_str,"%g",old_acc); ^~~~ In file included from /usr/include/stdio.h:873, @@ -9722,44 +9770,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:405:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function 'void LAMMPS_NS::FixTuneKspace::store_old_kspace_settings()': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:214:23: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] - sprintf(old_acc_str,"%g",old_acc); - ^~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/c++/8/cstdio:42, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:297:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:300:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&scale[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:326:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:328:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:329:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&ncoultablebits,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:330:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tabinner,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_msm.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function 'virtual void LAMMPS_NS::FixTuneKspace::pre_exchange()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:158:28: warning: '/long' directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/long",base_pair_style); @@ -9821,8 +9831,39 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:297:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:300:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&scale[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:326:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:328:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:329:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&ncoultablebits,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:330:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tabinner,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:830:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -9861,18 +9902,49 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:875:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:800:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:804:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:805:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:806:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:837:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:838:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:839:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:840:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:841:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tail_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:842:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&ncoultablebits,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:843:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tabinner,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:900:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -9911,43 +9983,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:945:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:800:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:804:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:805:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:806:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:837:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:838:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:839:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:840:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:841:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tail_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:842:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&ncoultablebits,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:843:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tabinner,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_cg.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:360:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -9983,83 +10022,81 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:403:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLong::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:537:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1549:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:538:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1550:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:539:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1551:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:540:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1552:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:541:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1553:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:543:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1555:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:544:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1556:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:545:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1557:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:546:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1558:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:547:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tail_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:548:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1559:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:549:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1560:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_cg.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_cg.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_cg.cpp" -[ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1549:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +[ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp" +[ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_stagger.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_stagger.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_stagger.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLong::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:537:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1550:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:538:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1551:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:539:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1552:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:540:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1553:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:541:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1555:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:543:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1556:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:544:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1557:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:545:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1558:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:546:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1559:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:547:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tail_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:548:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1560:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:549:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); @@ -10076,8 +10113,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:480:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_stagger.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_tip4p.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_tip4p.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/remap.cpp.o @@ -10088,12 +10123,16 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/fix_qeq_comb.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/fix_qeq_comb.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp: In member function 'void LAMMPS_NS::PairADP::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:564:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); @@ -10117,10 +10156,46 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:928:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp" -[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb.cpp" +[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp: In member function 'virtual void LAMMPS_NS::PairATM::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:313:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:316:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&nu[i][j][k],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp: In member function 'virtual void LAMMPS_NS::PairATM::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:341:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:342:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_triple,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp" +[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" 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-DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp: In member function 'virtual void LAMMPS_NS::PairEAM::read_file(char*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:470:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fptr); + ~~~~~^~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:471:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fptr); + ~~~~~^~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:473:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fptr); + ~~~~~^~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp: In member function 'void LAMMPS_NS::PairEAM::grab(FILE*, int, double*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:788:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fptr); + ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp: In member function 'void LAMMPS_NS::PairAIREBO::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3385:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); @@ -10521,32 +10596,80 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3757:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ -[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp: In member function 'virtual void LAMMPS_NS::PairATM::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:313:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:316:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&nu[i][j][k],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp: In member function 'virtual void LAMMPS_NS::PairATM::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:341:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:342:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_triple,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp" -[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp.o -/usr/bin/c++ 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat 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-DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::read_lib()': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:326:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:327:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:350:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:358:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:366:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:375:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:384:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:391:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:404:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:422:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:431:19: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:446:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:464:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:473:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:488:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:506:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:515:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(s,MAXLIB,fp); + ~~~~~^~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloy::read_file(char*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:140:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fptr); + ~~~~~^~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:141:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fptr); + ~~~~~^~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:142:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fptr); + ~~~~~^~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:143:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fptr); + ~~~~~^~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:168:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fptr); + ~~~~~^~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:192:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fptr); + ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp: In member function 'void LAMMPS_NS::PairBOP::read_table(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:4982:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); // skip first comment line @@ -10657,95 +10780,16 @@ fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw.cpp.o +[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw_zbl.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::read_lib()': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:326:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:327:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:350:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:358:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:366:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:375:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:384:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:391:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:404:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:422:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:431:19: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:446:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:464:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:473:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:488:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:506:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:515:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(s,MAXLIB,fp); - ~~~~~^~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloy::read_file(char*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:140:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fptr); - ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:141:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fptr); - ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:142:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fptr); - ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:143:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fptr); - ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:168:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fptr); - ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:192:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fptr); - ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp: In member function 'virtual void LAMMPS_NS::PairEAM::read_file(char*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:470:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fptr); - ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:471:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fptr); - ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:473:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fptr); - ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp: In member function 'void LAMMPS_NS::PairEAM::grab(FILE*, int, double*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:788:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fptr); - ~~~~~^~~~~~~~~~~~~~~~~~~ +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw_zbl.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw_zbl.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp: In member function 'int LAMMPS_NS::PairEIM::grabpair(FILE*, int, int)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp:971:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fptr); + ~~~~~^~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp:975:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fptr); + ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFS::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:140:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); @@ -10765,23 +10809,18 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:194:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw_zbl.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw_zbl.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw_zbl.cpp" -[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_nb3b_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_nb3b_harmonic.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp: In member function 'int LAMMPS_NS::PairEIM::grabpair(FILE*, int, int)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp:971:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fptr); - ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp:975:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fptr); - ~~~~~^~~~~~~~~~~~~~~~~~~ +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_sw.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_sw.cpp" +[ 52%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_tersoff.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_tersoff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_tersoff.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp: In member function 'void LAMMPS_NS::PairLCBOP::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:988:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); @@ -10885,10 +10924,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1053:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ -[ 52%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_sw.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_sw.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_sw.cpp" -[ 52%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_tersoff.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_tersoff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_tersoff.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_tersoff_mod.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_ti.cpp" +[ 53%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/dump_xtc.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/dump_xtc.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/dump_xtc.cpp" +[ 53%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_deposit.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_deposit.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_deposit.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp: In member function 'virtual void LAMMPS_NS::PairDSMC::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:350:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -10965,10 +11004,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:387:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/dump_xtc.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_deposit.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_efield.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_efield.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_efield.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_evaporate.cpp.o @@ -11035,50 +11070,6 @@ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:374:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:378:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&e0[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:379:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&r0[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:380:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&nn[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:381:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mm[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:382:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:383:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:415:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:416:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:417:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:418:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:419:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tail_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:421:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11120,8 +11111,44 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:468:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_angle.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_angle.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_angle.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:374:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:378:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&e0[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:379:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&r0[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:380:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&nn[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:381:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mm[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:382:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:383:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:415:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:416:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:417:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:418:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:419:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tail_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp: In member function 'virtual void LAMMPS_NS::AngleCharmm::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp:249:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); @@ -11135,6 +11162,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp:252:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r_ub[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp" +[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp: In member function 'virtual void LAMMPS_NS::AngleCosine::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp:197:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (comm->me == 0) fread(&k[1],sizeof(double),atom->nangletypes,fp); @@ -11149,6 +11180,24 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp:252:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp" +[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_angle.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_bond.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_bond.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineSquared::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp:219:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp:220:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&theta0[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_molecular.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_molecular.cpp" +[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_template.cpp.o /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp: In member function 'virtual void LAMMPS_NS::AngleHarmonic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp:219:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); @@ -11156,10 +11205,11 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp:220:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_bond.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_bond.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_bond.cpp" -[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_full.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp" +[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp: In member function 'virtual void LAMMPS_NS::AngleTable::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:292:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); @@ -11186,21 +11236,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:405:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineSquared::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp:219:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp:220:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&theta0[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_molecular.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp" -[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp: In member function 'virtual void LAMMPS_NS::BondFENE::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp:220:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); @@ -11226,8 +11256,7 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp:223:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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"CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp: In member function 'virtual void LAMMPS_NS::BondFENEExpand::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp:229:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); @@ -11244,10 +11273,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp:233:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&shift[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 55%] Building CXX 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp: In member function 'virtual void LAMMPS_NS::BondGromos::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp:172:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); @@ -11272,6 +11301,33 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp:178:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp: In member function 'virtual void LAMMPS_NS::BondTable::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:236:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tabstyle,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:237:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tablength,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp: In member function 'void LAMMPS_NS::BondTable::read_table(LAMMPS_NS::BondTable::Table*, char*, char*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:314:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fp); // no match, skip section + ~~~~~^~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:316:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fp); + ~~~~~^~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:317:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); + ~~~~~^~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:323:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fp); + ~~~~~^~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:335:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line,MAXLINE,fp); + ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp: In member function 'virtual void LAMMPS_NS::BondNonlinear::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp:171:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp); @@ -11298,29 +11354,20 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp:285:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&u0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp: In member function 'virtual void LAMMPS_NS::BondTable::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:236:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tabstyle,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:237:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tablength,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp: In member function 'void LAMMPS_NS::BondTable::read_table(LAMMPS_NS::BondTable::Table*, char*, char*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:314:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fp); // no match, skip section - ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:316:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fp); - ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:317:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); - ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:323:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fp); - ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:335:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line,MAXLINE,fp); - ~~~~~^~~~~~~~~~~~~~~~~ +[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/fix_cmap.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/fix_cmap.cpp" +[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp: In member function 'virtual void LAMMPS_NS::DihedralCharmmfsw::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:472:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); @@ -11337,6 +11384,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&weightflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_hbond_dreiding_morse.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_hbond_dreiding_morse.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp: In member function 'virtual void LAMMPS_NS::DihedralCharmm::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp:429:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); @@ -11353,36 +11406,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp:433:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&weightflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralHarmonic::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:333:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:334:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sign[1],sizeof(int),atom->ndihedraltypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:335:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp" -[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_hbond_dreiding_morse.cpp" -[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp: In member function 'virtual void LAMMPS_NS::DihedralHelix::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp:325:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aphi[1],sizeof(double),atom->ndihedraltypes,fp); @@ -11393,8 +11416,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cphi[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralMultiHarmonic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a1[1],sizeof(double),atom->ndihedraltypes,fp); @@ -11411,12 +11432,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:324:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a5[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp" -[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp" -[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp: In member function 'virtual void LAMMPS_NS::ImproperCvff::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp:339:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); @@ -11427,10 +11442,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp:341:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/atom_vec_peri.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/atom_vec_peri.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/atom_vec_peri.cpp" -[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp: In member function 'virtual void LAMMPS_NS::DihedralOPLS::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp:335:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp); @@ -11444,6 +11455,16 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp:338:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralHarmonic::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:333:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:334:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sign[1],sizeof(int),atom->ndihedraltypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:335:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp: In member function 'virtual void LAMMPS_NS::ImproperHarmonic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp:280:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); @@ -11451,6 +11472,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp" +[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp: In member function 'virtual void LAMMPS_NS::ImproperUmbrella::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kw[1],sizeof(double),atom->nimpropertypes,fp); @@ -11461,6 +11486,14 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp:323:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&C[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp" +[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/atom_vec_peri.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/atom_vec_peri.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:379:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11496,61 +11529,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:445:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:437:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:441:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:442:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:443:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&eps14[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:444:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma14[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:474:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj_inner,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:475:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:477:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:478:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:480:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:507:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&typeO,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:508:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&typeH,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:509:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&typeB,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:510:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&typeA,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:511:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&qdist,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:513:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp" +[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_dilatation_atom.cpp.o 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_dilatation_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_dilatation_atom.cpp" +[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_plasticity_atom.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_plasticity_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_plasticity_atom.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:621:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11595,16 +11579,67 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:673:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_dilatation_atom.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_dilatation_atom.cpp" -[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_plasticity_atom.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/fix_peri_neigh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:480:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:507:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&typeO,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:508:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&typeH,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:509:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&typeB,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:510:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&typeA,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:511:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&qdist,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:513:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:437:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:441:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:442:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:443:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&eps14[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:444:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma14[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:474:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj_inner,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:475:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:477:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:478:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp.o @@ -11613,57 +11648,49 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_hyper_global.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_hyper_global.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriLPS::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:495:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriEPS::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:570:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:499:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:574:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bulkmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:500:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:575:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&shearmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:501:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:576:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:502:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:577:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:503:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:578:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriEPS::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:570:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:579:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&m_yieldstress[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriLPS::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:495:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:574:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:499:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bulkmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:575:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:500:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&shearmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:576:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:501:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:577:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:502:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:578:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:503:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:579:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&m_yieldstress[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_hyper.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_hyper.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_hyper.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp: In member function 'virtual void LAMMPS_NS::PairPeriVES::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:552:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11689,6 +11716,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:562:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&m_taubi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_prd.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_prd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_prd.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp: In member function 'virtual void LAMMPS_NS::PairPeriPMB::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:424:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11705,6 +11734,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:431:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_tad.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_tad.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_tad.cpp" +[ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_hyper.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/compute_erotate_rigid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/compute_erotate_rigid.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/compute_rigid_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/compute_rigid_local.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_ehex.cpp.o @@ -11757,9 +11792,9 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_append_atoms.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON/pair_python.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON/pair_python.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_small.cpp: In member function 'virtual void LAMMPS_NS::FixRigidSmall::write_restart_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_small.cpp:2604:24: warning: '%s' directive output may be truncated writing up to 127 bytes into a region of size 93 [-Wformat-truncation=] snprintf(str,128,"Cannot open fix rigid restart file %s",outfile); @@ -11797,6 +11830,8 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 60%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON/pair_python.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/fix_nve_awpmd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/compute_pressure_bocs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/compute_pressure_bocs.cpp" +[ 61%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp" -[ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp: In member function 'virtual void LAMMPS_NS::BondOxdnaFene::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp:296:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); @@ -11849,25 +11882,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp:298:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp: In member function 'virtual void LAMMPS_NS::PairAWPMDCut::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:604:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:607:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp: In member function 'virtual void LAMMPS_NS::PairAWPMDCut::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:631:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:632:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:633:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:833:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11975,6 +11989,23 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:939:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp: In member function 'virtual void LAMMPS_NS::PairAWPMDCut::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:604:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:607:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp: In member function 'virtual void LAMMPS_NS::PairAWPMDCut::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:631:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:632:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:633:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:458:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12004,6 +12035,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:502:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_edpd_source.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_edpd_source.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaExcv::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:718:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12210,6 +12237,130 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1110:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_tdpd.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/compute_tdpd_cc_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/compute_tdpd_cc_atom.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:996:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1001:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon_st[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1002:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&a_st[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1003:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_st_0[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1004:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_st_c[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1005:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_st_lo[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1006:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_st_hi[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1007:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_st_lc[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1008:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_st_hc[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1009:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&b_st_lo[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1010:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&b_st_hi[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1011:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&shift_st[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1013:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&a_st4[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1014:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&theta_st4_0[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1015:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&dtheta_st4_ast[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1016:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&b_st4[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1017:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&dtheta_st4_c[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1019:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&a_st5[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1020:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&theta_st5_0[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1021:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&dtheta_st5_ast[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1022:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&b_st5[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1023:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&dtheta_st5_c[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1025:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&a_st6[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1026:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&theta_st6_0[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1027:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&dtheta_st6_ast[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1028:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&b_st6[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1029:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&dtheta_st6_c[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1031:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&a_st1[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1032:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cosphi_st1_ast[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1033:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&b_st1[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1034:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cosphi_st1_c[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1035:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&a_st2[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1036:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cosphi_st2_ast[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1037:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&b_st2[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1038:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cosphi_st2_c[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1104:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1105:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1106:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tail_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_edpd_source.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_edpd_source.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_edpd_source.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaHbond::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:979:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12347,122 +12498,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1107:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:996:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1001:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon_st[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1002:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&a_st[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1003:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_st_0[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1004:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_st_c[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1005:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_st_lo[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1006:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_st_hi[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1007:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_st_lc[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1008:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_st_hc[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1009:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&b_st_lo[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1010:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&b_st_hi[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1011:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&shift_st[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1013:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&a_st4[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1014:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&theta_st4_0[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1015:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&dtheta_st4_ast[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1016:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&b_st4[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1017:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&dtheta_st4_c[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1019:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&a_st5[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1020:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&theta_st5_0[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1021:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&dtheta_st5_ast[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1022:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&b_st5[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1023:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&dtheta_st5_c[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1025:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&a_st6[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1026:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&theta_st6_0[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1027:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&dtheta_st6_ast[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1028:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&b_st6[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1029:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&dtheta_st6_c[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1031:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&a_st1[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1032:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cosphi_st1_ast[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1033:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&b_st1[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1034:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cosphi_st1_c[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1035:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&a_st2[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1036:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cosphi_st2_ast[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1037:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&b_st2[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1038:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cosphi_st2_c[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1104:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1105:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1106:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tail_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_mvv_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_mvv_dpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_mvv_dpd.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaXstk::read_restart(FILE*)': @@ -12608,8 +12643,16 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd_rhosum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp: In member function 'virtual void LAMMPS_NS::PairEDPD::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:458:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12651,60 +12694,20 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:515:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp: In member function 'virtual void LAMMPS_NS::PairMDPD::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:353:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:357:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&A_att[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:358:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&B_rep[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:359:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&gamma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:360:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:361:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_r[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp: In member function 'virtual void LAMMPS_NS::PairMDPD::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:391:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&temperature,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:392:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:393:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&seed,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp" -[ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd_atom.cpp" -[ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_dpd_energy.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_dpd_energy.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_dpd_energy.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp: In member function 'virtual void LAMMPS_NS::AngleSDK::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp:336:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp:337:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&theta0[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp:338:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&repscale[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp: In member function 'virtual void LAMMPS_NS::PairTDPD::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:401:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12746,6 +12749,37 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:452:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDK::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:385:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:389:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&lj_type[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:390:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:391:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:392:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDK::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:422:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:423:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:424:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:425:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tail_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:476:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12784,57 +12818,50 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:521:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp: In member function 'virtual void LAMMPS_NS::AngleSDK::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp:336:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp:337:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&theta0[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp:338:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&repscale[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDK::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:385:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp: In member function 'virtual void LAMMPS_NS::PairMDPD::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:353:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:389:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&lj_type[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:390:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:391:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:357:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&A_att[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:392:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:358:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&B_rep[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:359:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&gamma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:360:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDK::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:422:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:361:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_r[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp: In member function 'virtual void LAMMPS_NS::PairMDPD::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:391:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&temperature,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:392:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:423:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:424:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:393:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&seed,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:425:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tail_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/atom_vec_dpd.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nbin_ssa.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nbin_ssa.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function 'void LAMMPS_NS::FixSAEDVTK::invoke_vector(LAMMPS_NS::bigint)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:434:26: warning: '%s' directive output may be truncated writing up to 127 bytes into a region of size 98 [-Wformat-truncation=] snprintf(str,128,"Cannot open fix saed/vtk file %s",nName); @@ -12848,6 +12875,37 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function 'void LAMMPS_NS::FixSAEDVTK::options(int, char**)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:561:28: warning: '%s' directive output may be truncated writing up to 127 bytes into a region of size 98 [-Wformat-truncation=] + snprintf(str,128,"Cannot open fix saed/vtk file %s",nName); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/c++/8/cstdio:42, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:22: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 31 and 158 bytes into a destination of size 128 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_rx.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp: In member function 'void LAMMPS_NS::FixEOStable::read_table(LAMMPS_NS::FixEOStable::Table*, LAMMPS_NS::FixEOStable::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp:216:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section @@ -12867,23 +12925,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp:237:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -[ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/npair_half_bin_newton_ssa.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function 'void LAMMPS_NS::FixSAEDVTK::options(int, char**)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:561:28: warning: '%s' directive output may be truncated writing up to 127 bytes into a region of size 98 [-Wformat-truncation=] - snprintf(str,128,"Cannot open fix saed/vtk file %s",nName); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/c++/8/cstdio:42, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:22: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 31 and 158 bytes into a destination of size 128 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp: In member function 'void LAMMPS_NS::FixEOStableRX::read_table(LAMMPS_NS::FixEOStableRX::Table*, LAMMPS_NS::FixEOStableRX::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:435:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section @@ -12903,24 +12944,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:474:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -[ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp" -[ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp" -[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdt::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:382:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12947,6 +12972,34 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:420:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp" +[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp: In member function 'virtual void LAMMPS_NS::PairExp6rx::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:974:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:978:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp: In member function 'virtual void LAMMPS_NS::PairExp6rx::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1004:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1005:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1006:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1007:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tail_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:483:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12973,62 +13026,55 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:522:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp: In member function 'virtual void LAMMPS_NS::PairExp6rx::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:974:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:978:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp: In member function 'virtual void LAMMPS_NS::PairExp6rx::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1004:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1005:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1006:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1007:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tail_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp: In member function 'void LAMMPS_NS::PairMultiLucy::read_table(LAMMPS_NS::PairMultiLucy::Table*, char*, char*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:366:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'void LAMMPS_NS::PairMultiLucyRX::read_table(LAMMPS_NS::PairMultiLucyRX::Table*, char*, char*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:511:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:368:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:513:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:369:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:514:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:375:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:520:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:388:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:533:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:390:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:535:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'void LAMMPS_NS::PairMultiLucyRX::read_table(LAMMPS_NS::PairMultiLucyRX::Table*, char*, char*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:511:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucyRX::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:854:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tabstyle,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:855:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tablength,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude.cpp" +[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_langevin_drude.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_langevin_drude.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp: In member function 'void LAMMPS_NS::PairMultiLucy::read_table(LAMMPS_NS::PairMultiLucy::Table*, char*, char*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:366:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:513:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:368:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:514:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:369:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:520:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:375:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:533:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:388:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:535:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:390:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucy::read_restart_settings(FILE*)': @@ -13038,17 +13084,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:710:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucyRX::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:854:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tabstyle,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:855:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tablength,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp" -[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_langevin_drude.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp.o @@ -13059,6 +13094,32 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_ke_atom_eff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_ke_atom_eff.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_ke_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_ke_eff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_ke_eff.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp: In member function 'virtual void LAMMPS_NS::PairThole::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:316:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:320:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&polar[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&thole[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:322:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp: In member function 'virtual void LAMMPS_NS::PairThole::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:352:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&thole_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:353:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:354:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:355:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:495:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -13110,32 +13171,6 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_deform_eff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_deform_eff.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_eff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_eff.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp: In member function 'virtual void LAMMPS_NS::PairThole::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:316:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:320:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&polar[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&thole[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:322:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp: In member function 'virtual void LAMMPS_NS::PairThole::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:352:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&thole_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:353:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:354:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:355:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_region_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp: In member function 'virtual void LAMMPS_NS::PairEffCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp:970:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -13191,6 +13218,20 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp:999:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp" +[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD/dump_h5md.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD/dump_h5md.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD/dump_h5md.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCutSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:277:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -13217,10 +13258,41 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:316:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp" -[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:657:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:661:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:662:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:663:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&lambda[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:664:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:697:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&nlambda,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:698:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&alphalj,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:700:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:701:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:702:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:703:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tail_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLongSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:301:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -13244,6 +13316,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:337:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:843:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -13288,8 +13362,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:894:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD/dump_h5md.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD/dump_h5md.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD/dump_h5md.cpp" +[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_momentum.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_momentum.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_momentum.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:381:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -13334,82 +13408,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:432:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:657:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:661:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:662:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:663:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&lambda[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:664:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:697:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&nlambda,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:698:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&alphalj,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:700:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:701:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:702:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:703:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tail_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:799:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:803:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:804:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:805:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&lambda[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:806:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:840:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&nlambda,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:841:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&alphalj,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:842:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&alphac,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:844:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:845:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:846:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:847:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:848:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tail_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLongSoft::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:525:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); @@ -13441,12 +13439,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:535:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_pc.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_pc.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:317:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -13466,8 +13458,49 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:325:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_rigid_pc_sphere.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_rigid_pc_sphere.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_rigid_pc_sphere.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:799:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:803:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:804:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:805:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&lambda[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:806:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:840:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&nlambda,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:841:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&alphalj,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:842:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&alphac,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:844:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:845:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:846:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:847:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:848:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tail_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_pc.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_pc.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_pc.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLongSoft::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:462:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); @@ -13484,10 +13517,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:466:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_viscous.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_viscous.cpp" +[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_rigid_pc_sphere.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_dens_final.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_dens_final.cpp" [ 68%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_dens_init.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_impl.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_impl.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_setup_done.cpp.o @@ -13538,12 +13573,6 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_linalg.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_linalg.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp: In member function 'void potdata::readpot(const char*, const char*, double)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:187:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); @@ -13585,14 +13614,43 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:123:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ +[ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineShift::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:228:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:229:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&kcost[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:230:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&ksint[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:231:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&theta[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_ackland_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_ackland_atom.cpp" +[ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_basal_atom.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_basal_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_basal_atom.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineShiftExp::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:260:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&umin[1],sizeof(double),atom->nangletypes,fp); @@ -13609,32 +13667,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:264:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineShift::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:228:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:229:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&kcost[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:230:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&ksint[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:231:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&theta[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp: In member function 'virtual void LAMMPS_NS::AngleFourier::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:235:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:236:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&C0[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:237:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&C1[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:238:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&C2[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_cnp_atom.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_cnp_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_cnp_atom.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp: In member function 'virtual void LAMMPS_NS::AngleDipole::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp:209:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); @@ -13652,24 +13686,44 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:243:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&N[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_basal_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_basal_atom.cpp" -[ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_cnp_atom.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_cnp_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_cnp_atom.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp: In member function 'virtual void LAMMPS_NS::AngleFourier::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:235:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:236:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&C0[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:237:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&C1[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:238:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&C2[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShift::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:181:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k[1],sizeof(double),atom->nbondtypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:182:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&r0[1],sizeof(double),atom->nbondtypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:183:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&r1[1],sizeof(double),atom->nbondtypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_entropy_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_entropy_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_entropy_atom.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_pressure_cylinder.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_pressure_cylinder.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_pressure_cylinder.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShiftCut::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:183:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k[1],sizeof(double),atom->nbondtypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:184:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&r0[1],sizeof(double),atom->nbondtypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:185:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&r1[1],sizeof(double),atom->nbondtypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_pressure_grem.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_pressure_grem.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_pressure_grem.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp: In member function 'virtual void LAMMPS_NS::AngleQuartic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp:236:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nangletypes,fp); @@ -13683,32 +13737,13 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp:239:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_pressure_grem.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_pressure_grem.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_stress_mop.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_stress_mop.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_stress_mop.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShift::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:181:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k[1],sizeof(double),atom->nbondtypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:182:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&r0[1],sizeof(double),atom->nbondtypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:183:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&r1[1],sizeof(double),atom->nbondtypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_stress_mop_profile.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_stress_mop_profile.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_stress_mop_profile.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_temp_rotate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_temp_rotate.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_temp_rotate.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShiftCut::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:183:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k[1],sizeof(double),atom->nbondtypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:184:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&r0[1],sizeof(double),atom->nbondtypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:185:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&r1[1],sizeof(double),atom->nbondtypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp" +[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp: In member function 'virtual void LAMMPS_NS::DihedralCosineShiftExp::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:324:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&umin[1],sizeof(double),atom->ndihedraltypes,fp); @@ -13733,15 +13770,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:328:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralNHarmonic::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp:322:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp:332:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(a[i],sizeof(double),nterms[i],fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp: In member function 'virtual void LAMMPS_NS::DihedralFourier::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp:371:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); @@ -13755,31 +13785,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp:388:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp.o 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_addtorque.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_addtorque.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp: In member function 'virtual void LAMMPS_NS::DihedralQuadratic::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp:328:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&phi0[1],sizeof(double),atom->ndihedraltypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_gle.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_gle.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp: In member function 'virtual void LAMMPS_NS::DihedralSpherical::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:759:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); @@ -13814,12 +13819,36 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:788:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(theta2_offset[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 71%] Building CXX object 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ipi.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ipi.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralNHarmonic::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp:322:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp:332:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(a[i],sizeof(double),nterms[i],fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_addtorque.cpp" +[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp: In member function 'virtual void LAMMPS_NS::DihedralQuadratic::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp:328:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&phi0[1],sizeof(double),atom->ndihedraltypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_bond_react.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_bond_react.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_bond_react.cpp" +[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ffl.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_flow_gauss.cpp" +[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_gle.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_gle.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_gle.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp: In member function 'virtual void LAMMPS_NS::DihedralTableCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1064:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); @@ -13867,6 +13896,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1164:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ +[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_grem.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_grem.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_grem.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp: In member function 'virtual void LAMMPS_NS::DihedralTable::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp:1026:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); @@ -13887,14 +13918,18 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp:1104:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -[ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_nvk.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_nvk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_nvk.cpp" +[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_imd.cpp.o +/usr/bin/c++ -DFFT_FFTW 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-DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ipi.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ipi.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelateLong::end_of_step()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp:506:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_pimd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_rhok.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_rhok.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_smd.cpp.o @@ -13915,8 +13950,13 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp: In member function 'virtual void LAMMPS_NS::ImproperCossq::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp:307:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k[1],sizeof(double),atom->nimpropertypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp:308:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp: In constructor 'LAMMPS_NS::FixTTMMod::FixTTMMod(LAMMPS_NS::LAMMPS*, int, char**)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:123:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); @@ -14050,15 +14090,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:229:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ -[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_agni.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_agni.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_agni.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp: In member function 'virtual void LAMMPS_NS::ImproperCossq::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp:307:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k[1],sizeof(double),atom->nimpropertypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp:308:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp: In member function 'virtual void LAMMPS_NS::ImproperDistance::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp:253:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); @@ -14066,21 +14099,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp:254:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_agni.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_agni.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_agni.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp: In member function 'virtual void LAMMPS_NS::ImproperRing::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp:332:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k[1],sizeof(double),atom->nimpropertypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp:333:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp" -[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp" -[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp: In member function 'virtual void LAMMPS_NS::ImproperFourier::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp:332:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); @@ -14097,14 +14121,47 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp:336:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&all[1],sizeof(int),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip_multi.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_extep.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_extep.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_extep.cpp" +[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip_multi.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip_multi.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip_multi.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDiel::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:288:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&rme[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:289:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigmae[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:290:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDiel::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:317:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:318:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:319:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp" +[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp: In member function 'virtual void LAMMPS_NS::ImproperRing::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp:332:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k[1],sizeof(double),atom->nimpropertypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp:333:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairBuckMDF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:345:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14134,12 +14191,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:384:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_z.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_z.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_z.cpp" -[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp: In member function 'virtual void LAMMPS_NS::PairCoulShield::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp:305:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigmae[i][j],sizeof(double),1,fp); @@ -14157,26 +14210,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp:334:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDiel::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:288:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&rme[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:289:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigmae[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:290:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDiel::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:317:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:318:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:319:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_list.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_list.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp: In member function 'virtual void LAMMPS_NS::PairGaussCut::read_restart(FILE*)': @@ -14205,10 +14240,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:347:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:314:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14229,12 +14260,22 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp" +[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:835:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14273,8 +14314,30 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:880:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp" +[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_tersoff_table.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_tersoff_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_tersoff_table.cpp" +[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_grem.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_grem.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_grem.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:314:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:318:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:319:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:320:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_inner[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:490:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14304,30 +14367,33 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:529:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:314:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_npt.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_npt.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_npt.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:278:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:318:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:319:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:282:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&d0[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:283:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:320:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_inner[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:284:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&r0[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:285:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:312:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:313:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp" -[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSpline::read_file(const char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:449:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); @@ -14354,31 +14420,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:669:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ -[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_tersoff_table.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_tersoff_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_tersoff_table.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSWSpline::read_file(const char*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:475:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, MAXLINE, fp); - ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSWSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:607:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, MAXLINE, fp); - ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:613:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, MAXLINE, fp); - ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:619:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, MAXLINE, fp); - ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:623:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, MAXLINE, fp); - ~~~~~^~~~~~~~~~~~~~~~~~~ -[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_grem.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_grem.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_grem.cpp" -[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_npt.cpp.o -/usr/bin/c++ 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp: In member function 'virtual void LAMMPS_NS::PairMomb::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:312:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14417,8 +14460,25 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:357:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSWSpline::read_file(const char*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:475:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, MAXLINE, fp); + ~~~~~^~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSWSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:607:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, MAXLINE, fp); + ~~~~~^~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:613:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, MAXLINE, fp); + ~~~~~^~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:619:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, MAXLINE, fp); + ~~~~~^~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:623:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, MAXLINE, fp); + ~~~~~^~~~~~~~~~~~~~~~~~~ +[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp: In member function 'virtual void LAMMPS_NS::PairSRP::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:703:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14448,35 +14508,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:742:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&exclude,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:278:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:282:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&d0[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:283:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&alpha[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:284:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&r0[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:285:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:312:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:313:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp" -[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp: In member function 'virtual void LAMMPS_NS::AngleClass2P6::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:389:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); @@ -14517,12 +14550,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:403:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/dump_molfile.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp" +[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineBuck6d::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:337:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); @@ -14533,15 +14562,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:339:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&th0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp: In member function 'virtual void LAMMPS_NS::ImproperInversionHarmonic::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&kw[1],sizeof(double),atom->nimpropertypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&w0[1],sizeof(double),atom->nimpropertypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf.cpp" +[ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/dump_molfile.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/dump_molfile.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/dump_molfile.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:420:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14583,16 +14605,19 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:467:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf_mpiio.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/molfile_interface.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/molfile_interface.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp: In member function 'virtual void LAMMPS_NS::ImproperInversionHarmonic::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&kw[1],sizeof(double),atom->nimpropertypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&w0[1],sizeof(double),atom->nimpropertypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp" +[ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:453:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14637,6 +14662,16 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:502:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf_mpiio.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf_mpiio.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf_mpiio.cpp" +[ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON/fix_phonon.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/fix_smd_move_triangulated_surface.cpp.o @@ -14709,6 +14744,12 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/compute_meso_t_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/compute_meso_t_atom.cpp" +[ 78%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/fix_meso.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/fix_meso.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/fix_meso.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp: In member function 'virtual void LAMMPS_NS::PairSMTBQ::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:420:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); @@ -14806,12 +14847,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:800:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ -[ 78%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/compute_meso_rho_atom.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/compute_meso_rho_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/compute_meso_rho_atom.cpp" -[ 78%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/compute_meso_t_atom.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/pair_sph_heatconduction.cpp.o @@ -14840,10 +14875,10 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/fix_npt_uef.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/fix_nvt_uef.cpp.o @@ -14851,8 +14886,8 @@ [ 79%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/uef_utils.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/domain_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/domain_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_class2_omp.cpp.o @@ -14919,8 +14954,8 @@ [ 81%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_fourier_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_fourier_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_fourier_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_fourier_simple_omp.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_fourier_simple_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_fourier_simple_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_quartic_omp.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_size_bin_newton_omp.cpp.o @@ -15176,10 +15211,10 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eim_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eim_omp.cpp" -[ 93%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_rebo_omp.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_rebo_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_rebo_omp.cpp" -[ 93%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_sw_omp.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_sw_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_sw_omp.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloyOMP::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:139:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); @@ -15263,8 +15292,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:187:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -[ 93%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_tersoff_omp.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_tersoff_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_tersoff_omp.cpp" +[ 92%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eim_omp.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eim_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eim_omp.cpp" +[ 93%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_rebo_omp.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_rebo_omp.cpp" +[ 93%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_sw_omp.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_sw_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_sw_omp.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFSOMP::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:139:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); @@ -15284,6 +15317,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:189:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ +[ 93%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_tersoff_omp.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_tersoff_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_tersoff_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_tersoff_mod_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_expand_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_expand_gpu.cpp" [ 97%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_gromacs_gpu.cpp.o @@ -15474,58 +15509,58 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_sw_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_sw_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_gpu.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFSGPU::read_file(char*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:377:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloyGPU::read_file(char*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:377:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:378:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:378:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:379:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:379:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:380:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:380:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:405:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:405:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:427:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:425:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 99%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_mod_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_mod_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_mod_gpu.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloyGPU::read_file(char*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:377:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +[ 99%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_zbl_gpu.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_zbl_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_zbl_gpu.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFSGPU::read_file(char*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:377:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:378:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:378:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:379:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:379:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:380:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:380:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:405:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:405:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:425:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:427:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -[ 99%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_zbl_gpu.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_zbl_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_zbl_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_vashishta_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_vashishta_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_vashishta_gpu.cpp" [100%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_sdk_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_born_coul_wolf_cs_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_born_coul_wolf_cs_gpu.cpp" [100%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_born_coul_long_cs_gpu.cpp.o @@ -15545,11 +15580,11 @@ mkdir test; cp examples/crack/* test/ cd test; /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/lmp < in.crack -------------------------------------------------------------------------- -[[48519,1],0]: A high-performance Open MPI point-to-point messaging module +[[34481,1],0]: A high-performance Open MPI point-to-point messaging module was unable to find any relevant network interfaces: Module: OpenFabrics (openib) - Host: ionos15-amd64 + Host: i-capture-the-hostname Another transport will be used instead, although this may result in lower performance. @@ -15564,7 +15599,7 @@ Created orthogonal box = (0 0 -0.278569) to (111.428 77.1994 0.278569) 1 by 1 by 1 MPI processor grid Created 8141 atoms - Time spent = 0.00171158 secs + Time spent = 0.00209667 secs 302 atoms in group lower 302 atoms in group upper 604 atoms in group boundary @@ -15624,20 +15659,20 @@ 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 -Loop time of 10.2793 on 1 procs for 5000 steps with 8141 atoms +Loop time of 10.686 on 1 procs for 5000 steps with 8141 atoms -Performance: 126078.639 tau/day, 486.415 timesteps/s -99.9% CPU use with 1 MPI tasks x 1 OpenMP threads +Performance: 121280.295 tau/day, 467.902 timesteps/s +94.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- -Pair | 8.476 | 8.476 | 8.476 | 0.0 | 82.46 -Neigh | 0.43392 | 0.43392 | 0.43392 | 0.0 | 4.22 -Comm | 0.010404 | 0.010404 | 0.010404 | 0.0 | 0.10 -Output | 0.0022737 | 0.0022737 | 0.0022737 | 0.0 | 0.02 -Modify | 0.983 | 0.983 | 0.983 | 0.0 | 9.56 -Other | | 0.3737 | | | 3.64 +Pair | 8.9026 | 8.9026 | 8.9026 | 0.0 | 83.31 +Neigh | 0.49344 | 0.49344 | 0.49344 | 0.0 | 4.62 +Comm | 0.0096967 | 0.0096967 | 0.0096967 | 0.0 | 0.09 +Output | 0.0021162 | 0.0021162 | 0.0021162 | 0.0 | 0.02 +Modify | 0.95571 | 0.95571 | 0.95571 | 0.0 | 8.94 +Other | | 0.3224 | | | 3.02 Nlocal: 8141 ave 8141 max 8141 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -15655,11 +15690,11 @@ mkdir test; cp examples/crack/* test/ cd test; mpirun -np 2 --allow-run-as-root --oversubscribe /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/lmp < in.crack -------------------------------------------------------------------------- -[[36638,1],0]: A high-performance Open MPI point-to-point messaging module +[[39282,1],0]: A high-performance Open MPI point-to-point messaging module was unable to find any relevant network interfaces: Module: OpenFabrics (openib) - Host: ionos15-amd64 + Host: i-capture-the-hostname Another transport will be used instead, although this may result in lower performance. @@ -15674,7 +15709,7 @@ Created orthogonal box = (0 0 -0.278569) to (111.428 77.1994 0.278569) 2 by 1 by 1 MPI processor grid Created 8141 atoms - Time spent = 0.00285848 secs + Time spent = 0.00292407 secs 302 atoms in group lower 302 atoms in group upper 604 atoms in group boundary @@ -15714,10 +15749,10 @@ 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 +[i-capture-the-hostname:267303] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics +[i-capture-the-hostname:267303] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 -[ionos15-amd64:468654] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics -[ionos15-amd64:468654] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 @@ -15736,20 +15771,20 @@ 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 -Loop time of 15.5316 on 2 procs for 5000 steps with 8141 atoms +Loop time of 21.3439 on 2 procs for 5000 steps with 8141 atoms -Performance: 83442.994 tau/day, 321.925 timesteps/s -97.1% CPU use with 2 MPI tasks x 1 OpenMP threads +Performance: 60719.879 tau/day, 234.259 timesteps/s +81.1% CPU use with 2 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- -Pair | 12.798 | 12.827 | 12.856 | 0.8 | 82.59 -Neigh | 0.77183 | 0.7769 | 0.78197 | 0.6 | 5.00 -Comm | 0.54094 | 0.57977 | 0.6186 | 5.1 | 3.73 -Output | 0.0025592 | 0.0044532 | 0.0063472 | 2.8 | 0.03 -Modify | 0.94187 | 0.9463 | 0.95072 | 0.5 | 6.09 -Other | | 0.3972 | | | 2.56 +Pair | 13.447 | 14.238 | 15.029 | 21.0 | 66.71 +Neigh | 0.77017 | 0.80549 | 0.84081 | 3.9 | 3.77 +Comm | 3.2057 | 4.1617 | 5.1177 | 46.9 | 19.50 +Output | 0.0026147 | 0.0031475 | 0.0036802 | 0.9 | 0.01 +Modify | 1.1745 | 1.2261 | 1.2778 | 4.7 | 5.74 +Other | | 0.9094 | | | 4.26 Nlocal: 4070.5 ave 4085 max 4056 min Histogram: 1 0 0 0 0 0 0 0 0 1 @@ -15762,7 +15797,7 @@ Ave neighs/atom = 8.77042 Neighbor list builds = 106 Dangerous builds = 0 -Total wall time: 0:00:15 +Total wall time: 0:00:21 rm -rf test make[1]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1' dh_auto_test -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build -Nlammps @@ -15772,7 +15807,7 @@ dh_testroot -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_prep -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_auto_install -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build - cd debian/build && make -j16 install DESTDIR=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd debian/build && make -j15 install DESTDIR=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' /usr/bin/cmake -S"/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" -B"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/progress.marks" @@ -15780,14 +15815,14 @@ make[2]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend -make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake" --color= make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/depend make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/depend make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake" --color= +make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/h5md.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/meam.dir/DependInfo.cmake" --color= @@ -15795,40 +15830,40 @@ cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/awpmd.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/poems.dir/DependInfo.cmake" --color= -make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/gpu.dir/DependInfo.cmake" --color= -make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/atc.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/build make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build +make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -make[3]: Nothing to be done for 'CMakeFiles/ocl_get_devices.dir/build'. +cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/atc.dir/DependInfo.cmake" --color= +make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +make[3]: Nothing to be done for 'CMakeFiles/awpmd.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -[ 0%] Built target ocl_get_devices +make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/gpu.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/meam.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -make[3]: Nothing to be done for 'CMakeFiles/awpmd.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/ocl_get_devices.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -[ 1%] Built target meam make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build -make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build -[ 2%] Built target awpmd +[ 1%] Built target awpmd +[ 2%] Built target meam make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -make[3]: Nothing to be done for 'CMakeFiles/h5md.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/poems.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -make[3]: Nothing to be done for 'CMakeFiles/poems.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/h5md.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -[ 2%] Built target h5md +[ 2%] Built target ocl_get_devices [ 5%] Built target poems +[ 5%] Built target h5md make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' @@ -17374,159 +17409,159 @@ dh_strip -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_makeshlibs -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_shlibdeps -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOVPIC-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingAnnotation-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelFlowPaths-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libICE.so.6 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOGDAL-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libSM.so.6 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkxdmf2-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingMatplotlib-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInteractionStyle-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libGLU.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallelExodus-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkVPIC-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkftgl-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkDICOMParser-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallel-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonColor-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMINC-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingImage-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libjsoncpp.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingHybrid-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelMPI-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallel-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingOpenGL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOPLY-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingSources-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libproj.so.13 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkTestingIOSQL-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingParallelLIC-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOImport-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersSMP-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingParallel-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersGeometry-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersGeneric-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkChartsCore-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkTestingGenericBridge-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallelNetCDF-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libhdf5_serial.so.103 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOInfovis-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonMisc-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libXt.so.6 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libtheoradec.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOVideo-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkverdict-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingVolumeOpenGL-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOImage-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersModeling-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOLSDyna-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallelLSDyna-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonSystem-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libGL.so.1 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersGeneral-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkexoIIc-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOSQL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOExport-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersTexture-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingMorphological-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersHyperTree-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOEnSight-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libSM.so.6 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libsqlite3.so.0 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMySQL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libsz.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkTestingRendering-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersAMR-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingContextOpenGL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingFourier-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkalglib-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOGDAL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersProgrammable-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallel-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkDomainsChemistry-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersImaging-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libsz.so.2 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkTestingGenericBridge-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersPython-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libgl2ps.so.1.4 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersSMP-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOODBC-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingLIC-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libxml2.so.2 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonMisc-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsInfovis-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkWrappingJava-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMySQL-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingStatistics-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingLabel-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInfovisBoostGraphAlgorithms-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelGeometry-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkLocalExample-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsGeovis-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersExtraction-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkGeovisCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMovie-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOGeometry-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonTransforms-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkParallelMPI4Py-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingStencil-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOSQL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMPIImage-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOPostgreSQL-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOXMLParser-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libtiff.so.5 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingParallel-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libX11.so.6 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libtheoraenc.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersSources-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingFreeTypeFontConfig-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOExport-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libexpat.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingFreeType-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingContext2D-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libXt.so.6 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingVolume-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonComputationalGeometry-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersVerdict-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkParallelCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersReebGraph-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingMath-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkexoIIc-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInteractionWidgets-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInfovisLayout-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingMorphological-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIONetCDF-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libgl2ps.so.1.4 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInfovisCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersSelection-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libX11.so.6 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingMatplotlib-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingExternal-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingVolume-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelMPI-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libquadmath.so.0 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersGeneric-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOPLY-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libGL.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInteractionImage-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersGeometry-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOXdmf2-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkParallelMPI4Py-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersReebGraph-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkmetaio-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libXext.so.6 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkChartsCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonExecutionModel-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkPythonInterpreter-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingFreeType-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingContextOpenGL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersStatistics-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsContext2D-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersHybrid-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libjsoncpp.so.1 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingAnnotation-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingCore-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingStencil-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOImport-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallelExodus-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonColor-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonExecutionModel-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOGeometry-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingColor-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersCore-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkverdict-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersImaging-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libXext.so.6 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingGL2PS-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingGeneral-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOGeoJSON-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkVPIC-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkWrappingPython27Core-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersSelection-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersModeling-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkxdmf2-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOAMR-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkParallelMPI-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingVolumeAMR-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libxml2.so.2 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInfovisLayout-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkTestingIOSQL-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOExodus-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libtheoradec.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingGL2PS-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOEnSight-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOPostgreSQL-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingExternal-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingCore-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOFFMPEG-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkPythonInterpreter-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkParallelMPI-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingContext2D-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersVerdict-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInfovisBoostGraphAlgorithms-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersFlowPaths-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingLIC-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libogg.so.0 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMPIImage-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkalglib-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsInfovis-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libfreetype.so.6 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsGeovis-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingFreeTypeFontConfig-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libnetcdf_c++.so.4 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersGeneral-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallelNetCDF-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingOpenGL-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersTexture-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelStatistics-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOGeoJSON-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMovie-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingMath-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallelLSDyna-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libtiff.so.5 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkftgl-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkGeovisCore-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersSources-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelGeometry-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libtheoraenc.so.1 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libGLU.so.1 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersAMR-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingVolumeAMR-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsCore-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingLOD-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkWrappingJava-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libexpat.so.1 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingVolumeOpenGL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersPython-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingHybrid-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInteractionImage-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingLabel-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingImage-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libICE.so.6 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInteractionStyle-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInfovisCore-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOImage-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOLSDyna-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingStatistics-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonSystem-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMINC-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonTransforms-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingParallelLIC-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelImaging-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersExtraction-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkDICOMParser-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkLocalExample-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOVPIC-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkParallelCore-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelStatistics-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtksys-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonComputationalGeometry-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelFlowPaths-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonMath-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersHyperTree-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelImaging-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingFourier-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersStatistics-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersProgrammable-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingColor-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingSources-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOFFMPEG-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersFlowPaths-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOXdmf2-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOInfovis-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkWrappingPython27Core-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingGeneral-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libsqlite3.so.0 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsContext2D-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libhdf5_serial.so.103 (it uses none of the library's symbols) dh_installdeb -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_gencontrol -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_md5sums -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_builddeb -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build -dpkg-deb: building package 'lammps' in '../lammps_0~20181211.gitad1b1897d+dfsg1-2_amd64.deb'. -dpkg-deb: building package 'lammps-doc' in '../lammps-doc_0~20181211.gitad1b1897d+dfsg1-2_all.deb'. -dpkg-deb: building package 'lammps-data' in '../lammps-data_0~20181211.gitad1b1897d+dfsg1-2_all.deb'. dpkg-deb: building package 'lammps-dbgsym' in '../lammps-dbgsym_0~20181211.gitad1b1897d+dfsg1-2_amd64.deb'. +dpkg-deb: building package 'lammps-data' in '../lammps-data_0~20181211.gitad1b1897d+dfsg1-2_all.deb'. +dpkg-deb: building package 'lammps-doc' in '../lammps-doc_0~20181211.gitad1b1897d+dfsg1-2_all.deb'. +dpkg-deb: building package 'lammps' in '../lammps_0~20181211.gitad1b1897d+dfsg1-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../lammps_0~20181211.gitad1b1897d+dfsg1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -17534,12 +17569,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/54151/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/54151/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/305433 and its subdirectories -I: Current time: Fri Jan 6 12:31:11 -12 2023 -I: pbuilder-time-stamp: 1673051471 +I: removing directory /srv/workspace/pbuilder/54151 and its subdirectories +I: Current time: Sun Dec 5 08:25:01 +14 2021 +I: pbuilder-time-stamp: 1638642301