Diff of the two buildlogs:

--
--- b1/build.log	2021-12-01 23:38:39.363551085 +0000
+++ b2/build.log	2021-12-01 23:45:25.269652431 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Tue Jan  3 17:47:52 -12 2023
-I: pbuilder-time-stamp: 1672811272
+I: Current time: Thu Dec  2 13:38:44 +14 2021
+I: pbuilder-time-stamp: 1638401924
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz]
 I: copying local configuration
@@ -17,7 +17,7 @@
 I: Extracting source
 gpgv: unknown type of key resource 'trustedkeys.kbx'
 gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
-gpgv: Signature made Sun Oct 28 02:11:18 2018 -12
+gpgv: Signature made Mon Oct 29 04:11:18 2018 +14
 gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
 gpgv:                issuer "tille@debian.org"
 gpgv: Can't check signature: No public key
@@ -37,136 +37,170 @@
 dpkg-source: info: applying ignore-m32-m64.patch
 I: using fakeroot in build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/30554/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/1483785/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos1-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
+Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
+Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
+Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/1483785/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/1483785/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='amd64'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16'
-  DISTRIBUTION=''
-  HOME='/root'
-  HOST_ARCH='amd64'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
+  BASH_VERSION='5.0.3(1)-release'
+  BUILDDIR=/build
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=amd64
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15'
+  DIRSTACK=()
+  DISTRIBUTION=
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=x86_64
+  HOST_ARCH=amd64
   IFS=' 	
   '
-  INVOCATION_ID='3c87088414a94d26a19c8f777579f774'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='30554'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=67609d3b5c1f46bea78353b147b2bf99
+  LANG=C
+  LANGUAGE=et_EE:et
+  LC_ALL=C
+  MACHTYPE=x86_64-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=1483785
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Ez5bTVdB9i/pbuilderrc_nJ7p --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Ez5bTVdB9i/b1 --logfile b1/build.log genometools_1.5.10+ds-3.dsc'
-  SUDO_GID='111'
-  SUDO_UID='106'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://85.184.249.68:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Ez5bTVdB9i/pbuilderrc_rdSk --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Ez5bTVdB9i/b2 --logfile b2/build.log genometools_1.5.10+ds-3.dsc'
+  SUDO_GID=110
+  SUDO_UID=105
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://78.137.99.97:3128
 I: uname -a
-  Linux ionos15-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux
 I: ls -l /bin
   total 5116
-  -rwxr-xr-x 1 root root 1168776 Apr 17  2019 bash
-  -rwxr-xr-x 3 root root   38984 Jul 10  2019 bunzip2
-  -rwxr-xr-x 3 root root   38984 Jul 10  2019 bzcat
-  lrwxrwxrwx 1 root root       6 Jul 10  2019 bzcmp -> bzdiff
-  -rwxr-xr-x 1 root root    2227 Jul 10  2019 bzdiff
-  lrwxrwxrwx 1 root root       6 Jul 10  2019 bzegrep -> bzgrep
-  -rwxr-xr-x 1 root root    4877 Jun 24  2019 bzexe
-  lrwxrwxrwx 1 root root       6 Jul 10  2019 bzfgrep -> bzgrep
-  -rwxr-xr-x 1 root root    3641 Jul 10  2019 bzgrep
-  -rwxr-xr-x 3 root root   38984 Jul 10  2019 bzip2
-  -rwxr-xr-x 1 root root   14328 Jul 10  2019 bzip2recover
-  lrwxrwxrwx 1 root root       6 Jul 10  2019 bzless -> bzmore
-  -rwxr-xr-x 1 root root    1297 Jul 10  2019 bzmore
-  -rwxr-xr-x 1 root root   43744 Feb 28  2019 cat
-  -rwxr-xr-x 1 root root   64320 Feb 28  2019 chgrp
-  -rwxr-xr-x 1 root root   64288 Feb 28  2019 chmod
-  -rwxr-xr-x 1 root root   72512 Feb 28  2019 chown
-  -rwxr-xr-x 1 root root  146880 Feb 28  2019 cp
-  -rwxr-xr-x 1 root root  121464 Jan 17  2019 dash
-  -rwxr-xr-x 1 root root  109408 Feb 28  2019 date
-  -rwxr-xr-x 1 root root   76712 Feb 28  2019 dd
-  -rwxr-xr-x 1 root root   93744 Feb 28  2019 df
-  -rwxr-xr-x 1 root root  138856 Feb 28  2019 dir
-  -rwxr-xr-x 1 root root   84288 Jan  9  2019 dmesg
-  lrwxrwxrwx 1 root root       8 Sep 26  2018 dnsdomainname -> hostname
-  lrwxrwxrwx 1 root root       8 Sep 26  2018 domainname -> hostname
-  -rwxr-xr-x 1 root root   39520 Feb 28  2019 echo
-  -rwxr-xr-x 1 root root      28 Jan  7  2019 egrep
-  -rwxr-xr-x 1 root root   35424 Feb 28  2019 false
-  -rwxr-xr-x 1 root root      28 Jan  7  2019 fgrep
-  -rwxr-xr-x 1 root root   68880 Jan  9  2019 findmnt
-  -rwsr-xr-x 1 root root   34896 Apr 22  2020 fusermount
-  -rwxr-xr-x 1 root root  198976 Jan  7  2019 grep
-  -rwxr-xr-x 2 root root    2345 Jan  5  2019 gunzip
-  -rwxr-xr-x 1 root root    6375 Jan  5  2019 gzexe
-  -rwxr-xr-x 1 root root   98048 Jan  5  2019 gzip
-  -rwxr-xr-x 1 root root   26696 Sep 26  2018 hostname
-  -rwxr-xr-x 1 root root   68552 Feb 28  2019 ln
-  -rwxr-xr-x 1 root root   56760 Jul 26  2018 login
-  -rwxr-xr-x 1 root root  138856 Feb 28  2019 ls
-  -rwxr-xr-x 1 root root  108624 Jan  9  2019 lsblk
-  -rwxr-xr-x 1 root root   89088 Feb 28  2019 mkdir
-  -rwxr-xr-x 1 root root   68544 Feb 28  2019 mknod
-  -rwxr-xr-x 1 root root   43808 Feb 28  2019 mktemp
-  -rwxr-xr-x 1 root root   43008 Jan  9  2019 more
-  -rwsr-xr-x 1 root root   51280 Jan  9  2019 mount
-  -rwxr-xr-x 1 root root   14408 Jan  9  2019 mountpoint
-  -rwxr-xr-x 1 root root  138728 Feb 28  2019 mv
-  lrwxrwxrwx 1 root root       8 Sep 26  2018 nisdomainname -> hostname
-  lrwxrwxrwx 1 root root      14 Feb 14  2019 pidof -> /sbin/killall5
-  -rwxr-xr-x 1 root root   39616 Feb 28  2019 pwd
-  lrwxrwxrwx 1 root root       4 Apr 17  2019 rbash -> bash
-  -rwxr-xr-x 1 root root   47776 Feb 28  2019 readlink
-  -rwxr-xr-x 1 root root   68416 Feb 28  2019 rm
-  -rwxr-xr-x 1 root root   47776 Feb 28  2019 rmdir
-  -rwxr-xr-x 1 root root   23312 Jan 21  2019 run-parts
-  -rwxr-xr-x 1 root root  122224 Dec 22  2018 sed
-  lrwxrwxrwx 1 root root       4 Dec 10 16:20 sh -> dash
-  -rwxr-xr-x 1 root root   39552 Feb 28  2019 sleep
-  -rwxr-xr-x 1 root root   80672 Feb 28  2019 stty
-  -rwsr-xr-x 1 root root   63568 Jan  9  2019 su
-  -rwxr-xr-x 1 root root   35488 Feb 28  2019 sync
-  -rwxr-xr-x 1 root root  445560 Apr 23  2019 tar
-  -rwxr-xr-x 1 root root   14440 Jan 21  2019 tempfile
-  -rwxr-xr-x 1 root root   97152 Feb 28  2019 touch
-  -rwxr-xr-x 1 root root   35424 Feb 28  2019 true
-  -rwxr-xr-x 1 root root   14328 Apr 22  2020 ulockmgr_server
-  -rwsr-xr-x 1 root root   34888 Jan  9  2019 umount
-  -rwxr-xr-x 1 root root   39584 Feb 28  2019 uname
-  -rwxr-xr-x 2 root root    2345 Jan  5  2019 uncompress
-  -rwxr-xr-x 1 root root  138856 Feb 28  2019 vdir
-  -rwxr-xr-x 1 root root   34896 Jan  9  2019 wdctl
-  -rwxr-xr-x 1 root root     946 Jan 21  2019 which
-  lrwxrwxrwx 1 root root       8 Sep 26  2018 ypdomainname -> hostname
-  -rwxr-xr-x 1 root root    1983 Jan  5  2019 zcat
-  -rwxr-xr-x 1 root root    1677 Jan  5  2019 zcmp
-  -rwxr-xr-x 1 root root    5879 Jan  5  2019 zdiff
-  -rwxr-xr-x 1 root root      29 Jan  5  2019 zegrep
-  -rwxr-xr-x 1 root root      29 Jan  5  2019 zfgrep
-  -rwxr-xr-x 1 root root    2080 Jan  5  2019 zforce
-  -rwxr-xr-x 1 root root    7584 Jan  5  2019 zgrep
-  -rwxr-xr-x 1 root root    2205 Jan  5  2019 zless
-  -rwxr-xr-x 1 root root    1841 Jan  5  2019 zmore
-  -rwxr-xr-x 1 root root    4552 Jan  5  2019 znew
-I: user script /srv/workspace/pbuilder/30554/tmp/hooks/D02_print_environment finished
+  -rwxr-xr-x 1 root root 1168776 Apr 18  2019 bash
+  -rwxr-xr-x 3 root root   38984 Jul 11  2019 bunzip2
+  -rwxr-xr-x 3 root root   38984 Jul 11  2019 bzcat
+  lrwxrwxrwx 1 root root       6 Jul 11  2019 bzcmp -> bzdiff
+  -rwxr-xr-x 1 root root    2227 Jul 11  2019 bzdiff
+  lrwxrwxrwx 1 root root       6 Jul 11  2019 bzegrep -> bzgrep
+  -rwxr-xr-x 1 root root    4877 Jun 25  2019 bzexe
+  lrwxrwxrwx 1 root root       6 Jul 11  2019 bzfgrep -> bzgrep
+  -rwxr-xr-x 1 root root    3641 Jul 11  2019 bzgrep
+  -rwxr-xr-x 3 root root   38984 Jul 11  2019 bzip2
+  -rwxr-xr-x 1 root root   14328 Jul 11  2019 bzip2recover
+  lrwxrwxrwx 1 root root       6 Jul 11  2019 bzless -> bzmore
+  -rwxr-xr-x 1 root root    1297 Jul 11  2019 bzmore
+  -rwxr-xr-x 1 root root   43744 Mar  1  2019 cat
+  -rwxr-xr-x 1 root root   64320 Mar  1  2019 chgrp
+  -rwxr-xr-x 1 root root   64288 Mar  1  2019 chmod
+  -rwxr-xr-x 1 root root   72512 Mar  1  2019 chown
+  -rwxr-xr-x 1 root root  146880 Mar  1  2019 cp
+  -rwxr-xr-x 1 root root  121464 Jan 18  2019 dash
+  -rwxr-xr-x 1 root root  109408 Mar  1  2019 date
+  -rwxr-xr-x 1 root root   76712 Mar  1  2019 dd
+  -rwxr-xr-x 1 root root   93744 Mar  1  2019 df
+  -rwxr-xr-x 1 root root  138856 Mar  1  2019 dir
+  -rwxr-xr-x 1 root root   84288 Jan 10  2019 dmesg
+  lrwxrwxrwx 1 root root       8 Sep 27  2018 dnsdomainname -> hostname
+  lrwxrwxrwx 1 root root       8 Sep 27  2018 domainname -> hostname
+  -rwxr-xr-x 1 root root   39520 Mar  1  2019 echo
+  -rwxr-xr-x 1 root root      28 Jan  8  2019 egrep
+  -rwxr-xr-x 1 root root   35424 Mar  1  2019 false
+  -rwxr-xr-x 1 root root      28 Jan  8  2019 fgrep
+  -rwxr-xr-x 1 root root   68880 Jan 10  2019 findmnt
+  -rwsr-xr-x 1 root root   34896 Apr 23  2020 fusermount
+  -rwxr-xr-x 1 root root  198976 Jan  8  2019 grep
+  -rwxr-xr-x 2 root root    2345 Jan  6  2019 gunzip
+  -rwxr-xr-x 1 root root    6375 Jan  6  2019 gzexe
+  -rwxr-xr-x 1 root root   98048 Jan  6  2019 gzip
+  -rwxr-xr-x 1 root root   26696 Sep 27  2018 hostname
+  -rwxr-xr-x 1 root root   68552 Mar  1  2019 ln
+  -rwxr-xr-x 1 root root   56760 Jul 27  2018 login
+  -rwxr-xr-x 1 root root  138856 Mar  1  2019 ls
+  -rwxr-xr-x 1 root root  108624 Jan 10  2019 lsblk
+  -rwxr-xr-x 1 root root   89088 Mar  1  2019 mkdir
+  -rwxr-xr-x 1 root root   68544 Mar  1  2019 mknod
+  -rwxr-xr-x 1 root root   43808 Mar  1  2019 mktemp
+  -rwxr-xr-x 1 root root   43008 Jan 10  2019 more
+  -rwsr-xr-x 1 root root   51280 Jan 10  2019 mount
+  -rwxr-xr-x 1 root root   14408 Jan 10  2019 mountpoint
+  -rwxr-xr-x 1 root root  138728 Mar  1  2019 mv
+  lrwxrwxrwx 1 root root       8 Sep 27  2018 nisdomainname -> hostname
+  lrwxrwxrwx 1 root root      14 Feb 15  2019 pidof -> /sbin/killall5
+  -rwxr-xr-x 1 root root   39616 Mar  1  2019 pwd
+  lrwxrwxrwx 1 root root       4 Apr 18  2019 rbash -> bash
+  -rwxr-xr-x 1 root root   47776 Mar  1  2019 readlink
+  -rwxr-xr-x 1 root root   68416 Mar  1  2019 rm
+  -rwxr-xr-x 1 root root   47776 Mar  1  2019 rmdir
+  -rwxr-xr-x 1 root root   23312 Jan 22  2019 run-parts
+  -rwxr-xr-x 1 root root  122224 Dec 23  2018 sed
+  lrwxrwxrwx 1 root root       4 Dec  2 13:38 sh -> bash
+  lrwxrwxrwx 1 root root       4 Nov  8 11:58 sh.distrib -> dash
+  -rwxr-xr-x 1 root root   39552 Mar  1  2019 sleep
+  -rwxr-xr-x 1 root root   80672 Mar  1  2019 stty
+  -rwsr-xr-x 1 root root   63568 Jan 10  2019 su
+  -rwxr-xr-x 1 root root   35488 Mar  1  2019 sync
+  -rwxr-xr-x 1 root root  445560 Apr 24  2019 tar
+  -rwxr-xr-x 1 root root   14440 Jan 22  2019 tempfile
+  -rwxr-xr-x 1 root root   97152 Mar  1  2019 touch
+  -rwxr-xr-x 1 root root   35424 Mar  1  2019 true
+  -rwxr-xr-x 1 root root   14328 Apr 23  2020 ulockmgr_server
+  -rwsr-xr-x 1 root root   34888 Jan 10  2019 umount
+  -rwxr-xr-x 1 root root   39584 Mar  1  2019 uname
+  -rwxr-xr-x 2 root root    2345 Jan  6  2019 uncompress
+  -rwxr-xr-x 1 root root  138856 Mar  1  2019 vdir
+  -rwxr-xr-x 1 root root   34896 Jan 10  2019 wdctl
+  -rwxr-xr-x 1 root root     946 Jan 22  2019 which
+  lrwxrwxrwx 1 root root       8 Sep 27  2018 ypdomainname -> hostname
+  -rwxr-xr-x 1 root root    1983 Jan  6  2019 zcat
+  -rwxr-xr-x 1 root root    1677 Jan  6  2019 zcmp
+  -rwxr-xr-x 1 root root    5879 Jan  6  2019 zdiff
+  -rwxr-xr-x 1 root root      29 Jan  6  2019 zegrep
+  -rwxr-xr-x 1 root root      29 Jan  6  2019 zfgrep
+  -rwxr-xr-x 1 root root    2080 Jan  6  2019 zforce
+  -rwxr-xr-x 1 root root    7584 Jan  6  2019 zgrep
+  -rwxr-xr-x 1 root root    2205 Jan  6  2019 zless
+  -rwxr-xr-x 1 root root    1841 Jan  6  2019 zmore
+  -rwxr-xr-x 1 root root    4552 Jan  6  2019 znew
+I: user script /srv/workspace/pbuilder/1483785/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -514,7 +548,7 @@
 Get: 256 http://deb.debian.org/debian buster/main amd64 texlive-pictures all 2018.20190227-2 [8201 kB]
 Get: 257 http://deb.debian.org/debian buster/main amd64 texlive-latex-extra all 2018.20190227-2 [12.3 MB]
 Get: 258 http://deb.debian.org/debian buster/main amd64 xsltproc amd64 1.1.32-2.2~deb10u1 [122 kB]
-Fetched 582 MB in 8s (74.5 MB/s)
+Fetched 582 MB in 12s (47.6 MB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package libbsd0:amd64.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19195 files and directories currently installed.)
@@ -1624,7 +1658,8 @@
 fakeroot is already the newest version (1.23-1).
 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 I: Building the package
-I: Running cd /build/genometools-1.5.10+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../genometools_1.5.10+ds-3_source.changes
+hostname: Name or service not known
+I: Running cd /build/genometools-1.5.10+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../genometools_1.5.10+ds-3_source.changes
 dpkg-buildpackage: info: source package genometools
 dpkg-buildpackage: info: source version 1.5.10+ds-3
 dpkg-buildpackage: info: source distribution unstable
@@ -1705,12 +1740,19 @@
    debian/rules override_dh_auto_build
 make[1]: Entering directory '/build/genometools-1.5.10+ds'
 faketime -f "`TZ=UTC date -d @1540734891 +'%Y-%m-%d %H:%M:%S'`" dh_auto_build -- verbose=yes useshared=yes x32=no 64bit=yes errorcheck=no all docs manuals
-	make -j16 "INSTALL=install --strip-program=true" verbose=yes useshared=yes x32=no 64bit=yes errorcheck=no all docs manuals
+	make -j15 "INSTALL=install --strip-program=true" verbose=yes useshared=yes x32=no 64bit=yes errorcheck=no all docs manuals
 make[2]: Entering directory '/build/genometools-1.5.10+ds'
 echo '[create obj/gt_config.h]'
 [create obj/gt_config.h]
 test -d obj || mkdir -p obj
 test -d obj/src/core || mkdir -p obj/src/core
+test -d obj/src/core || mkdir -p obj/src/core
+test -d obj/src/core || mkdir -p obj/src/core
+test -d obj/src/core || mkdir -p obj/src/core
+test -d obj/src/core || mkdir -p obj/src/core
+test -d obj/src/core || mkdir -p obj/src/core
+test -d obj/src/core || mkdir -p obj/src/core
+test -d obj/src/core || mkdir -p obj/src/core
 (echo '#ifndef GT_CONFIG_H' ;\
 echo '#define GT_CONFIG_H' ;\
 echo '#define GT_CC "'`cc --version | head -n 1`\" ;\
@@ -1720,303 +1762,296 @@
     -e 's/^/#define GT_CPPFLAGS "/'; \
   echo '#define GT_VERSION "'`cat VERSION`\" ) > obj/gt_config.h
 cc -c src/core/alphabet.c -o obj/src/core/alphabet.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/array.c -o obj/src/core/array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/array2dim.c -o obj/src/core/array2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cat VERSION | \
-          sed 's/\([0-9]*\)\.[0-9]*\.[0-9]*/#define GT_MAJOR_VERSION \1/' >> obj/gt_config.h
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/array2dim_sparse.c -o obj/src/core/array2dim_sparse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/core || mkdir -p obj/src/core
-cat VERSION | \
-          sed 's/[0-9]*\.\([0-9]*\)\.[0-9]*/#define GT_MINOR_VERSION \1/' >> obj/gt_config.h
 cc -c src/core/array3dim.c -o obj/src/core/array3dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/core || mkdir -p obj/src/core
-cat VERSION | \
-          sed 's/[0-9]*\.[0-9]*\.\([0-9]*\)/#define GT_MICRO_VERSION \1/' >> obj/gt_config.h
 cc -c src/core/basename.c -o obj/src/core/basename.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-echo '#endif' >> obj/gt_config.h
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/bioseq.c -o obj/src/core/bioseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/array2dim.c -o obj/src/core/array2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/array2dim.o
-test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/bioseq_col.c -o obj/src/core/bioseq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
-test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/array2dim_sparse.c -o obj/src/core/array2dim_sparse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/array2dim_sparse.o
 cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/array3dim.c -o obj/src/core/array3dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/array3dim.o
 cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/core || mkdir -p obj/src/core
+cat VERSION | \
+          sed 's/\([0-9]*\)\.[0-9]*\.[0-9]*/#define GT_MAJOR_VERSION \1/' >> obj/gt_config.h
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cat VERSION | \
+          sed 's/[0-9]*\.\([0-9]*\)\.[0-9]*/#define GT_MINOR_VERSION \1/' >> obj/gt_config.h
+test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cat VERSION | \
+          sed 's/[0-9]*\.[0-9]*\.\([0-9]*\)/#define GT_MICRO_VERSION \1/' >> obj/gt_config.h
+cc -c src/core/array2dim.c -o obj/src/core/array2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/array2dim.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/basename.c -o obj/src/core/basename.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/basename.o
+cc -c src/core/array3dim.c -o obj/src/core/array3dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/array3dim.o
+echo '#endif' >> obj/gt_config.h
 cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/array2dim_sparse.c -o obj/src/core/array2dim_sparse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/array2dim_sparse.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/basename.c -o obj/src/core/basename.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/basename.o
+cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bioseq_iterator.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/bittab.c -o obj/src/core/bittab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bioseq_iterator.o
 cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/bsearch.c -o obj/src/core/bsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/byte_popcount.c -o obj/src/core/byte_popcount.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitbuffer.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/byte_select.c -o obj/src/core/byte_select.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bool_matrix.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/byte_popcount.c -o obj/src/core/byte_popcount.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/byte_popcount.o
-cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitbuffer.o
-cc -c src/core/byte_select.c -o obj/src/core/byte_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/byte_select.o
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/byte_select.c -o obj/src/core/byte_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/byte_select.o
 cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bool_matrix.o
+cc -c src/core/bioseq_col.c -o obj/src/core/bioseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bioseq_col.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/checkbitpackstring.c -o obj/src/core/checkbitpackstring.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitpackstringop.o
 cc -c src/core/bioseq.c -o obj/src/core/bioseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bioseq.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/checkbitpackstring16.c -o obj/src/core/checkbitpackstring16.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackarray.o
 cc -c src/core/array.c -o obj/src/core/array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/array.o
-cc -c src/core/bioseq_col.c -o obj/src/core/bioseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bioseq_col.o
-cc -c src/core/checkbitpackstring.c -o obj/src/core/checkbitpackstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackstring.o
 test -d obj/src/core || mkdir -p obj/src/core
+test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackarray.o
+cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/checkbitpackstring.c -o obj/src/core/checkbitpackstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackstring.o
+cc -c src/core/bsearch.c -o obj/src/core/bsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bsearch.o
 cc -c src/core/checkbitpackstring64.c -o obj/src/core/checkbitpackstring64.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/alphabet.c -o obj/src/core/alphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/alphabet.o
+cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitpackstringop32.o
 cc -c src/core/class_alloc.c -o obj/src/core/class_alloc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitpackstringop16.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/bittab.c -o obj/src/core/bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bittab.o
-cc -c src/core/class_alloc.c -o obj/src/core/class_alloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/class_alloc.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/class_alloc_lock.o
-cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/codon_iterator.o
-cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitpackstringop.o
+cc -c src/core/bittab.c -o obj/src/core/bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bittab.o
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/class_alloc.c -o obj/src/core/class_alloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/class_alloc.o
 cc -c src/core/codon_iterator_simple.c -o obj/src/core/codon_iterator_simple.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/bsearch.c -o obj/src/core/bsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bsearch.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitpackstringop8.o
 cc -c src/core/colorspace.c -o obj/src/core/colorspace.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitpackstringop8.o
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/class_alloc_lock.o
 cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitpackstringop64.o
+cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/codon_iterator.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitpackstringop16.o
-cc -c src/core/alphabet.c -o obj/src/core/alphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/alphabet.o
-cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitpackstringop32.o
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/compat.c -o obj/src/core/compat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitpackstringop64.o
-cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/codon_iterator_encseq.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/complement.c -o obj/src/core/complement.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/codon_iterator_simple.c -o obj/src/core/codon_iterator_simple.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/codon_iterator_simple.o
-cc -c src/core/colorspace.c -o obj/src/core/colorspace.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/colorspace.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/countingsort.c -o obj/src/core/countingsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/codon_iterator_simple.c -o obj/src/core/codon_iterator_simple.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/codon_iterator_simple.o
 cc -c src/core/compat.c -o obj/src/core/compat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/compat.o
+cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/codon_iterator_encseq.o
+cc -c src/core/colorspace.c -o obj/src/core/colorspace.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/colorspace.o
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/complement.c -o obj/src/core/complement.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/complement.o
 cc -c src/core/cstr.c -o obj/src/core/cstr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/cstr_array.c -o obj/src/core/cstr_array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/complement.c -o obj/src/core/complement.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/complement.o
-cc -c src/core/countingsort.c -o obj/src/core/countingsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/countingsort.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/combinatorics.o
 cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/compact_ulong_store.o
 cc -c src/core/csvline_reader.c -o obj/src/core/csvline_reader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/combinatorics.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/desc_buffer.c -o obj/src/core/desc_buffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/core || mkdir -p obj/src/core
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/countingsort.c -o obj/src/core/countingsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/countingsort.o
+cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/dlist.c -o obj/src/core/dlist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/cstr_array.c -o obj/src/core/cstr_array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/cstr_array.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/cstr_table.o
 cc -c src/core/dyn_bittab.c -o obj/src/core/dyn_bittab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/cstr.c -o obj/src/core/cstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/cstr.o
+cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/cstr_table.o
 test -d obj/src/core || mkdir -p obj/src/core
-test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackstring-int.o
 cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/eansi.c -o obj/src/core/eansi.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/cstr.c -o obj/src/core/cstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/cstr.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/encseq.c -o obj/src/core/encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/csvline_reader.c -o obj/src/core/csvline_reader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/csvline_reader.o
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/csvline_reader.c -o obj/src/core/csvline_reader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/csvline_reader.o
+cc -c src/core/desc_buffer.c -o obj/src/core/desc_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/desc_buffer.o
+cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/disc_distri.o
 cc -c src/core/eansi.c -o obj/src/core/eansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/eansi.o
-cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/dynalloc.o
+cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/ebzlib.o
 cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/dynalloc.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/dyn_bittab.c -o obj/src/core/dyn_bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/dyn_bittab.o
-cc -c src/core/desc_buffer.c -o obj/src/core/desc_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/desc_buffer.o
-cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/ebzlib.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/disc_distri.o
-cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/dual-pivot-qsort.o
-cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackstring-int.o
-cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackstring32.o
-test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/encseq_ptr.c -o obj/src/core/encseq_ptr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/checkbitpackstring16.c -o obj/src/core/checkbitpackstring16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackstring16.o
+cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/dual-pivot-qsort.o
+cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/endianess.c -o obj/src/core/endianess.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/checkbitpackstring64.c -o obj/src/core/checkbitpackstring64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackstring64.o
 test -d obj/src/core || mkdir -p obj/src/core
+test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/encseq_ptr.c -o obj/src/core/encseq_ptr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/endianess.c -o obj/src/core/endianess.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/error.c -o obj/src/core/error.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq_access_type.o
-cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackstring8.o
-cc -c src/core/endianess.c -o obj/src/core/endianess.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/endianess.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/example.c -o obj/src/core/example.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/example_a.c -o obj/src/core/example_a.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/encseq_ptr.c -o obj/src/core/encseq_ptr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq_ptr.o
+cc -c src/core/endianess.c -o obj/src/core/endianess.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/endianess.o
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/example_a.c -o obj/src/core/example_a.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/dlist.c -o obj/src/core/dlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/dlist.o
 cc -c src/core/example_b.c -o obj/src/core/example_b.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/ezlib.c -o obj/src/core/ezlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/error.c -o obj/src/core/error.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/error.o
-cc -c src/core/dlist.c -o obj/src/core/dlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/dlist.o
+cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackstring8.o
+test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/encseq_ptr.c -o obj/src/core/encseq_ptr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq_ptr.o
+cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq_access_type.o
 cc -c src/core/example.c -o obj/src/core/example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/example.o
+cc -c src/core/fa.c -o obj/src/core/fa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/example_a.c -o obj/src/core/example_a.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/example_a.o
+cc -c src/core/error.c -o obj/src/core/error.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/error.o
 cc -c src/core/example_b.c -o obj/src/core/example_b.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/example_b.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/fa.c -o obj/src/core/fa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/fasta.c -o obj/src/core/fasta.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/fasta_reader.c -o obj/src/core/fasta_reader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/fasta_reader_fsm.c -o obj/src/core/fasta_reader_fsm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq_col.o
 cc -c src/core/ezlib.c -o obj/src/core/ezlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/ezlib.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq_metadata.o
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/fasta_reader_seqit.c -o obj/src/core/fasta_reader_seqit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/fasta.c -o obj/src/core/fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fasta.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/fastq.c -o obj/src/core/fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/fasta_reader.c -o obj/src/core/fasta_reader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fasta_reader.o
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/fastq.c -o obj/src/core/fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/file.c -o obj/src/core/file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq_options.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/fileutils.c -o obj/src/core/fileutils.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/gc_content.c -o obj/src/core/gc_content.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/fasta_reader.c -o obj/src/core/fasta_reader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fasta_reader.o
+cc -c src/core/fasta_reader_seqit.c -o obj/src/core/fasta_reader_seqit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fasta_reader_seqit.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/grep.c -o obj/src/core/grep.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/fasta_reader_seqit.c -o obj/src/core/fasta_reader_seqit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fasta_reader_seqit.o
-cc -c src/core/fasta_reader_fsm.c -o obj/src/core/fasta_reader_fsm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fasta_reader_fsm.o
+cc -c src/core/fasta.c -o obj/src/core/fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fasta.o
 cc -c src/core/fastq.c -o obj/src/core/fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fastq.o
+cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq_options.o
+cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq_metadata.o
+cc -c src/core/fasta_reader_fsm.c -o obj/src/core/fasta_reader_fsm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fasta_reader_fsm.o
+cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fasta_reader_rec.o
+cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq_col.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/gtdatapath.c -o obj/src/core/gtdatapath.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fasta_reader_rec.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/hashmap.c -o obj/src/core/hashmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/gc_content.c -o obj/src/core/gc_content.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/gc_content.o
+cc -c src/core/hashmap.c -o obj/src/core/hashmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/hashtable.c -o obj/src/core/hashtable.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/gtdatapath.c -o obj/src/core/gtdatapath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/gtdatapath.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/init.c -o obj/src/core/init.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
+test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/io.c -o obj/src/core/io.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/file.c -o obj/src/core/file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/file.o
-cc -c src/core/io.c -o obj/src/core/io.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/log.c -o obj/src/core/log.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/gtdatapath.c -o obj/src/core/gtdatapath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/gtdatapath.o
+cc -c src/core/logger.c -o obj/src/core/logger.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/logger.c -o obj/src/core/logger.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/ma.c -o obj/src/core/ma.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/mapspec.c -o obj/src/core/mapspec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/fileutils.c -o obj/src/core/fileutils.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fileutils.o
 cc -c src/core/log.c -o obj/src/core/log.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/log.o
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/mathsupport.c -o obj/src/core/mathsupport.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/grep.c -o obj/src/core/grep.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/grep.o
 cc -c src/core/init.c -o obj/src/core/init.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/init.o
-cc -c src/core/mathsupport.c -o obj/src/core/mathsupport.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/fileutils.c -o obj/src/core/fileutils.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fileutils.o
 test -d obj/src/core || mkdir -p obj/src/core
-test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/hashmap.c -o obj/src/core/hashmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/hashmap.o
 cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/file.c -o obj/src/core/file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/file.o
 cc -c src/core/io.c -o obj/src/core/io.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/io.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/fa.c -o obj/src/core/fa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fa.o
-cc -c src/core/logger.c -o obj/src/core/logger.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/logger.o
+cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/hashmap.c -o obj/src/core/hashmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/hashmap.o
+test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/md5_seqid.c -o obj/src/core/md5_seqid.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/msort.c -o obj/src/core/msort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/logger.c -o obj/src/core/logger.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/logger.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/multithread.c -o obj/src/core/multithread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/md5_fingerprint.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/option.c -o obj/src/core/option.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/md5_fingerprint.o
+cc -c src/core/multithread.c -o obj/src/core/multithread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/orf.c -o obj/src/core/orf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/md5_seqid.c -o obj/src/core/md5_seqid.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/md5_seqid.o
+test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/output_file.c -o obj/src/core/output_file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/fa.c -o obj/src/core/fa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fa.o
 cc -c src/core/multithread.c -o obj/src/core/multithread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/multithread.o
+cc -c src/core/parseutils.c -o obj/src/core/parseutils.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/md5_tab.o
+cc -c src/core/orf.c -o obj/src/core/orf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/orf.o
+cc -c src/core/ma.c -o obj/src/core/ma.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/ma.o
 test -d obj/src/core || mkdir -p obj/src/core
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/parseutils.c -o obj/src/core/parseutils.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/password_entry.c -o obj/src/core/password_entry.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/phase.c -o obj/src/core/phase.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/mapspec.c -o obj/src/core/mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/mapspec.o
 cc -c src/core/mathsupport.c -o obj/src/core/mathsupport.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/mathsupport.o
-cc -c src/core/orf.c -o obj/src/core/orf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/orf.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/process.c -o obj/src/core/process.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/md5_tab.o
-cc -c src/core/hashtable.c -o obj/src/core/hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/hashtable.o
-cc -c src/core/password_entry.c -o obj/src/core/password_entry.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/password_entry.o
-test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/process.c -o obj/src/core/process.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/process.o
-cc -c src/core/progressbar.c -o obj/src/core/progressbar.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/phase.c -o obj/src/core/phase.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/phase.o
-cc -c src/core/ma.c -o obj/src/core/ma.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/ma.o
 cc -c src/core/output_file.c -o obj/src/core/output_file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/output_file.o
+cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/md5_encoder.o
 test -d obj/src/core || mkdir -p obj/src/core
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/process.c -o obj/src/core/process.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/process.o
+cc -c src/core/phase.c -o obj/src/core/phase.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/phase.o
+cc -c src/core/progressbar.c -o obj/src/core/progressbar.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/qsort-ulong.c -o obj/src/core/qsort-ulong.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/md5_encoder.o
+test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/password_entry.c -o obj/src/core/password_entry.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/password_entry.o
+cc -c src/core/hashtable.c -o obj/src/core/hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/hashtable.o
 cc -c src/core/qsort_r.c -o obj/src/core/qsort_r.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/mapspec.c -o obj/src/core/mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/mapspec.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/quality.c -o obj/src/core/quality.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
@@ -2025,75 +2060,77 @@
 cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/range.c -o obj/src/core/range.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/progressbar.c -o obj/src/core/progressbar.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/progressbar.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/readmode.c -o obj/src/core/readmode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/safearith.c -o obj/src/core/safearith.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/score_function.c -o obj/src/core/score_function.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/parseutils.c -o obj/src/core/parseutils.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/parseutils.o
+cc -c src/core/readmode.c -o obj/src/core/readmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/readmode.o
+cc -c src/core/progressbar.c -o obj/src/core/progressbar.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/progressbar.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/quality.c -o obj/src/core/quality.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/quality.o
 cc -c src/core/score_matrix.c -o obj/src/core/score_matrix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/parseutils.c -o obj/src/core/parseutils.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/parseutils.o
+cc -c src/core/score_function.c -o obj/src/core/score_function.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/score_function.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/seq.c -o obj/src/core/seq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/readmode.c -o obj/src/core/readmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/readmode.o
+cc -c src/core/qsort-ulong.c -o obj/src/core/qsort-ulong.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/qsort-ulong.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/seq_col.c -o obj/src/core/seq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/seq_info_cache.c -o obj/src/core/seq_info_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/score_function.c -o obj/src/core/score_function.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/score_function.o
+cc -c src/core/safearith.c -o obj/src/core/safearith.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/safearith.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/seq_iterator.c -o obj/src/core/seq_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/seq.c -o obj/src/core/seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/seq.o
-cc -c src/core/qsort-ulong.c -o obj/src/core/qsort-ulong.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/qsort-ulong.o
-cc -c src/core/seq_info_cache.c -o obj/src/core/seq_info_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/seq_info_cache.o
 cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/interval_tree.o
 test -d obj/src/core || mkdir -p obj/src/core
+test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/seq_iterator_sequence_buffer.c -o obj/src/core/seq_iterator_sequence_buffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/safearith.c -o obj/src/core/safearith.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/safearith.o
+cc -c src/core/seq_info_cache.c -o obj/src/core/seq_info_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/seq_info_cache.o
 cc -c src/core/sequence_buffer.c -o obj/src/core/sequence_buffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/range.c -o obj/src/core/range.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/range.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/seq_col.c -o obj/src/core/seq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/seq_col.o
+cc -c src/core/queue.c -o obj/src/core/queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/queue.o
+cc -c src/core/score_matrix.c -o obj/src/core/score_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/score_matrix.o
 cc -c src/core/seq_iterator.c -o obj/src/core/seq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/seq_iterator.o
 cc -c src/core/sequence_buffer_embl.c -o obj/src/core/sequence_buffer_embl.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/sequence_buffer_fasta.c -o obj/src/core/sequence_buffer_fasta.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/sequence_buffer_fastq.c -o obj/src/core/sequence_buffer_fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/score_matrix.c -o obj/src/core/score_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/score_matrix.o
+cc -c src/core/seq_iterator_sequence_buffer.c -o obj/src/core/seq_iterator_sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/seq_iterator_sequence_buffer.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/sequence_buffer_gb.c -o obj/src/core/sequence_buffer_gb.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/range.c -o obj/src/core/range.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/range.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/seq_iterator_fastq.o
 cc -c src/core/sequence_buffer_plain.c -o obj/src/core/sequence_buffer_plain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/seq_iterator_sequence_buffer.c -o obj/src/core/seq_iterator_sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/seq_iterator_sequence_buffer.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/showtime.c -o obj/src/core/showtime.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/queue.c -o obj/src/core/queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/queue.o
 cc -c src/core/sig.c -o obj/src/core/sig.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/showtime.c -o obj/src/core/showtime.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/showtime.o
 cc -c src/core/msort.c -o obj/src/core/msort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/msort.o
-cc -c src/core/sequence_buffer_fasta.c -o obj/src/core/sequence_buffer_fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_fasta.o
+cc -c src/core/showtime.c -o obj/src/core/showtime.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/showtime.o
+cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/splitter.c -o obj/src/core/splitter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/sequence_buffer_fastq.c -o obj/src/core/sequence_buffer_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_fastq.o
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/sequence_buffer.c -o obj/src/core/sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer.o
+cc -c src/core/sequence_buffer_fasta.c -o obj/src/core/sequence_buffer_fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_fasta.o
+cc -c src/core/sequence_buffer_plain.c -o obj/src/core/sequence_buffer_plain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_plain.o
 cc -c src/core/str.c -o obj/src/core/str.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/sig.c -o obj/src/core/sig.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sig.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/sequence_buffer_plain.c -o obj/src/core/sequence_buffer_plain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_plain.o
-cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/spacepeak.o
 cc -c src/core/str_array.c -o obj/src/core/str_array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/seq_iterator_fastq.o
+cc -c src/core/sequence_buffer_fastq.c -o obj/src/core/sequence_buffer_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_fastq.o
+cc -c src/core/qsort_r.c -o obj/src/core/qsort_r.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/qsort_r.o
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/spacepeak.o
 cc -c src/core/str_cache.c -o obj/src/core/str_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/strand.c -o obj/src/core/strand.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
@@ -2101,505 +2138,503 @@
 cc -c src/core/strcmp.c -o obj/src/core/strcmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/string_distri.c -o obj/src/core/string_distri.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/sequence_buffer.c -o obj/src/core/sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer.o
-cc -c src/core/str_cache.c -o obj/src/core/str_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/str_cache.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/strand.c -o obj/src/core/strand.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/strand.o
 cc -c src/core/symbol.c -o obj/src/core/symbol.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/strcmp.c -o obj/src/core/strcmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/strcmp.o
 cc -c src/core/thread.c -o obj/src/core/thread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/str_cache.c -o obj/src/core/str_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/str_cache.o
 cc -c src/core/str_array.c -o obj/src/core/str_array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/str_array.o
-cc -c src/core/qsort_r.c -o obj/src/core/qsort_r.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/qsort_r.o
+cc -c src/core/strand.c -o obj/src/core/strand.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/strand.o
+cc -c src/core/strcmp.c -o obj/src/core/strcmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/strcmp.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/timer.c -o obj/src/core/timer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/tokenizer.c -o obj/src/core/tokenizer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/sequence_buffer_embl.c -o obj/src/core/sequence_buffer_embl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_embl.o
 cc -c src/core/symbol.c -o obj/src/core/symbol.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/symbol.o
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/option.c -o obj/src/core/option.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/option.o
 cc -c src/core/thread.c -o obj/src/core/thread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/thread.o
 cc -c src/core/tool.c -o obj/src/core/tool.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/tool_iterator.c -o obj/src/core/tool_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/toolbox.c -o obj/src/core/toolbox.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/sequence_buffer_embl.c -o obj/src/core/sequence_buffer_embl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_embl.o
 cc -c src/core/string_distri.c -o obj/src/core/string_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/string_distri.o
+cc -c src/core/toolbox.c -o obj/src/core/toolbox.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/tooldriver.c -o obj/src/core/tooldriver.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/splitter.c -o obj/src/core/splitter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/splitter.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/trans_table.c -o obj/src/core/trans_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
-test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/translator.c -o obj/src/core/translator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/tool_iterator.c -o obj/src/core/tool_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/tool_iterator.o
 cc -c src/core/tool.c -o obj/src/core/tool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/tool.o
-cc -c src/core/splitter.c -o obj/src/core/splitter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/splitter.o
-cc -c src/core/tooldriver.c -o obj/src/core/tooldriver.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/tooldriver.o
-cc -c src/core/version.c -o obj/src/core/version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/option.c -o obj/src/core/option.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/option.o
+cc -c src/core/tool_iterator.c -o obj/src/core/tool_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/tool_iterator.o
+cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/tokenizer.c -o obj/src/core/tokenizer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/tokenizer.o
-cc -c src/core/toolbox.c -o obj/src/core/toolbox.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/toolbox.o
+test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/str.c -o obj/src/core/str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/str.o
-cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/unit_testing.o
-cc -c src/core/version.c -o obj/src/core/version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/version.o
+cc -c src/core/version.c -o obj/src/core/version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/tooldriver.c -o obj/src/core/tooldriver.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/tooldriver.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/versionfunc.c -o obj/src/core/versionfunc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/toolbox.c -o obj/src/core/toolbox.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/toolbox.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/timer.c -o obj/src/core/timer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/timer.o
+cc -c src/core/versionfunc.c -o obj/src/core/versionfunc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/warning.c -o obj/src/core/warning.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/versionfunc.c -o obj/src/core/versionfunc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/versionfunc.o
+cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/radix_sort.o
+cc -c src/core/sequence_buffer_gb.c -o obj/src/core/sequence_buffer_gb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_gb.o
+cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/unit_testing.o
+cc -c src/core/version.c -o obj/src/core/version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/version.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/xansi.c -o obj/src/core/xansi.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/xansi.c -o obj/src/core/xansi.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/timer.c -o obj/src/core/timer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/timer.o
 cc -c src/core/xbsd.c -o obj/src/core/xbsd.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/warning.c -o obj/src/core/warning.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/warning.o
 test -d obj/src/core || mkdir -p obj/src/core
-cc -c src/core/sequence_buffer_gb.c -o obj/src/core/sequence_buffer_gb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_gb.o
-cc -c src/core/xbzlib.c -o obj/src/core/xbzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
+cc -c src/core/xbzlib.c -o obj/src/core/xbzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/core/xposix.c -o obj/src/core/xposix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/radix_sort.o
+cc -c src/core/versionfunc.c -o obj/src/core/versionfunc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/versionfunc.o
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/xzlib.c -o obj/src/core/xzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/core || mkdir -p obj/src/core
 cc -c src/core/yarandom.c -o obj/src/core/yarandom.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/translator.c -o obj/src/core/translator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/translator.o
+cc -c src/core/warning.c -o obj/src/core/warning.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/warning.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/core/xbsd.c -o obj/src/core/xbsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/xbsd.o
-cc -c src/core/trans_table.c -o obj/src/core/trans_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/trans_table.o
 cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/core/xansi.c -o obj/src/core/xansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/xansi.o
-test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/add_ids_visitor.c -o obj/src/extended/add_ids_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/core/xbzlib.c -o obj/src/core/xbzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/xbzlib.o
-cc -c src/core/yarandom.c -o obj/src/core/yarandom.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/yarandom.o
-cc -c src/core/xzlib.c -o obj/src/core/xzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/xzlib.o
+cc -c src/core/xbsd.c -o obj/src/core/xbsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/xbsd.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/add_ids_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/core/xbzlib.c -o obj/src/core/xbzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/xbzlib.o
 cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/add_introns_stream.o
-cc -c src/core/xposix.c -o obj/src/core/xposix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/xposix.o
+cc -c src/core/trans_table.c -o obj/src/core/trans_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/trans_table.o
+cc -c src/core/yarandom.c -o obj/src/core/yarandom.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/yarandom.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/alignment.c -o obj/src/extended/alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/core/xansi.c -o obj/src/core/xansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/xansi.o
+cc -c src/core/xzlib.c -o obj/src/core/xzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/xzlib.o
+cc -c src/core/translator.c -o obj/src/core/translator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/translator.o
+cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/add_ids_stream.o
+cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/add_introns_stream.o
+cc -c src/core/xposix.c -o obj/src/core/xposix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/xposix.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/anno_db_schema.c -o obj/src/extended/anno_db_schema.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/assembly_stats_calculator.c -o obj/src/extended/assembly_stats_calculator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/bed_in_stream.c -o obj/src/extended/bed_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/add_ids_visitor.c -o obj/src/extended/add_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/add_ids_visitor.o
-cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/anno_db_schema.c -o obj/src/extended/anno_db_schema.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/anno_db_schema.o
+cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/add_ids_visitor.c -o obj/src/extended/add_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/add_ids_visitor.o
 cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/array_in_stream.o
-cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/aligned_segments_pile.o
+cc -c src/extended/anno_db_schema.c -o obj/src/extended/anno_db_schema.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/anno_db_schema.o
+cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/array_out_stream.o
 cc -c src/extended/bitinstream.c -o obj/src/extended/bitinstream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/array_out_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/blast_process_call.c -o obj/src/extended/blast_process_call.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/buffer_stream.c -o obj/src/extended/buffer_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/bed_in_stream.c -o obj/src/extended/bed_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/bed_in_stream.o
+cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/aligned_segments_pile.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/aligned_segment.o
+cc -c src/extended/bed_in_stream.c -o obj/src/extended/bed_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/bed_in_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/buffer_stream.c -o obj/src/extended/buffer_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/buffer_stream.o
 cc -c src/extended/cds_stream.c -o obj/src/extended/cds_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/buffer_stream.c -o obj/src/extended/buffer_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/buffer_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/bitoutstream.o
 cc -c src/extended/assembly_stats_calculator.c -o obj/src/extended/assembly_stats_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/assembly_stats_calculator.o
+cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/cds_check_stream.o
 cc -c src/extended/bitinstream.c -o obj/src/extended/bitinstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/bitinstream.o
+cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/affinealign.o
+cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/bitoutstream.o
-cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/cds_check_stream.o
-cc -c src/extended/chain.c -o obj/src/extended/chain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/cds_stream.c -o obj/src/extended/cds_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/cds_stream.o
+cc -c src/extended/chain.c -o obj/src/extended/chain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/aligned_segment.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/check_boundaries_visitor.c -o obj/src/extended/check_boundaries_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/clustered_set.c -o obj/src/extended/clustered_set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/affinealign.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/coin_hmm.c -o obj/src/extended/coin_hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/chain.c -o obj/src/extended/chain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/chain.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/blast_process_call.c -o obj/src/extended/blast_process_call.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/blast_process_call.o
 cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/chain.c -o obj/src/extended/chain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/chain.o
 cc -c src/extended/check_boundaries_visitor.c -o obj/src/extended/check_boundaries_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/check_boundaries_visitor.o
-test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/clustered_set.c -o obj/src/extended/clustered_set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/clustered_set.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/clustered_set.c -o obj/src/extended/clustered_set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/clustered_set.o
-cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/coin_hmm.c -o obj/src/extended/coin_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/coin_hmm.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/chseqids_stream.o
-cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/cds_check_visitor.o
+test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/collect_ids_visitor.o
-cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/bed_parser.o
+cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/cds_check_visitor.o
+cc -c src/extended/coin_hmm.c -o obj/src/extended/coin_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/coin_hmm.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/cds_visitor.o
+cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/chseqids_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/condenseq_search_arguments.c -o obj/src/extended/condenseq_search_arguments.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/collect_ids_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/comment_node.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/clustered_set_uf.o
 cc -c src/extended/csa_gene.c -o obj/src/extended/csa_gene.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/csa_splice_form.c -o obj/src/extended/csa_splice_form.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/condenseq_search_arguments.c -o obj/src/extended/condenseq_search_arguments.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/condenseq_search_arguments.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/cds_visitor.o
 cc -c src/extended/alignment.c -o obj/src/extended/alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/alignment.o
-cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/clustered_set_uf.o
-cc -c src/extended/condenseq_search_arguments.c -o obj/src/extended/condenseq_search_arguments.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/condenseq_search_arguments.o
+cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/comment_node.o
+cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/bed_parser.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/csa_variable_strands.c -o obj/src/extended/csa_variable_strands.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/csa_stream.o
-test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/csa_gene.c -o obj/src/extended/csa_gene.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/csa_gene.o
 cc -c src/extended/csa_splice_form.c -o obj/src/extended/csa_splice_form.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/csa_splice_form.o
+test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/csa_stream.o
 cc -c src/extended/diagonalbandalign_affinegapcost.c -o obj/src/extended/diagonalbandalign_affinegapcost.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/csa_gene.c -o obj/src/extended/csa_gene.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/csa_gene.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/dice_hmm.c -o obj/src/extended/dice_hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/cstr_iterator.o
-cc -c src/extended/csa_variable_strands.c -o obj/src/extended/csa_variable_strands.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/csa_variable_strands.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/csa_variable_strands.c -o obj/src/extended/csa_variable_strands.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/csa_variable_strands.o
+cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/cstr_iterator.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/dup_feature_stream.c -o obj/src/extended/dup_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/dot_out_stream.o
 cc -c src/extended/dice_hmm.c -o obj/src/extended/dice_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/dice_hmm.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/dup_feature_visitor.c -o obj/src/extended/dup_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/dot_out_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/editscript.c -o obj/src/extended/editscript.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/anno_db_gfflike.o
-cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/dot_visitor.o
 cc -c src/extended/dup_feature_stream.c -o obj/src/extended/dup_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/dup_feature_stream.o
+test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/elias_gamma.c -o obj/src/extended/elias_gamma.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/dot_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/anno_db_gfflike.o
+cc -c src/extended/dup_feature_visitor.c -o obj/src/extended/dup_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/dup_feature_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/encdesc_header_io.c -o obj/src/extended/encdesc_header_io.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/consensus_sa.o
+cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/csa_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/eof_node.c -o obj/src/extended/eof_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/elias_gamma.c -o obj/src/extended/elias_gamma.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/elias_gamma.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/elias_gamma.c -o obj/src/extended/elias_gamma.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/elias_gamma.o
-cc -c src/extended/dup_feature_visitor.c -o obj/src/extended/dup_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/dup_feature_visitor.o
-cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/csa_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/eof_node.c -o obj/src/extended/eof_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/eof_node.o
 cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/consensus_sa.o
+cc -c src/extended/eof_node.c -o obj/src/extended/eof_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/eof_node.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/fasta_header_iterator.c -o obj/src/extended/fasta_header_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/feature_in_stream.c -o obj/src/extended/feature_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/extract_feature_stream.o
+cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/evaluator.o
+cc -c src/extended/fasta_header_iterator.c -o obj/src/extended/fasta_header_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/fasta_header_iterator.o
+cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/condenseq.o
+cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/diagonalbandalign.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/extract_feature_visitor.o
 cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/fasta_header_iterator.c -o obj/src/extended/fasta_header_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/fasta_header_iterator.o
-cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/extract_feature_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/evaluator.o
-cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/extract_feature_sequence.o
+cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/feature_info.c -o obj/src/extended/feature_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/compressed_bitsequence.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/extract_feature_sequence.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/extract_feature_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/feature_node_observer.c -o obj/src/extended/feature_node_observer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/feature_in_stream.c -o obj/src/extended/feature_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_in_stream.o
-cc -c src/extended/encdesc_header_io.c -o obj/src/extended/encdesc_header_io.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/encdesc_header_io.o
-cc -c src/extended/feature_info.c -o obj/src/extended/feature_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_info.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/feature_in_stream.c -o obj/src/extended/feature_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_in_stream.o
 cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/condenseq.o
+cc -c src/extended/feature_node_observer.c -o obj/src/extended/feature_node_observer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_node_observer.o
 cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_node_iterator.o
+cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_out_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/compressed_bitsequence.o
+cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_stream.o
 cc -c src/extended/feature_visitor.c -o obj/src/extended/feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/feature_info.c -o obj/src/extended/feature_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_info.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_index_memory.o
+cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/condenseq_creator.o
 cc -c src/extended/gap_str.c -o obj/src/extended/gap_str.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/feature_node_observer.c -o obj/src/extended/feature_node_observer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_node_observer.o
-cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_out_stream.o
-cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_node_iterator.o
+cc -c src/extended/encdesc_header_io.c -o obj/src/extended/encdesc_header_io.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/encdesc_header_io.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/genome_node.c -o obj/src/extended/genome_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_index.o
-cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/diagonalbandalign.o
-cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_index_memory.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/feature_visitor.c -o obj/src/extended/feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_index.o
 cc -c src/extended/gff3_in_stream_plain.c -o obj/src/extended/gff3_in_stream_plain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/feature_visitor.c -o obj/src/extended/feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/gff3_out_stream.c -o obj/src/extended/gff3_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/gap_str.c -o obj/src/extended/gap_str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gap_str.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_in_stream.o
+cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_escaping.o
 cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_numsorted_out_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/gff3_visitor.c -o obj/src/extended/gff3_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_in_stream.o
-cc -c src/extended/gff3_out_stream.c -o obj/src/extended/gff3_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_out_stream.o
-cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_escaping.o
-cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_numsorted_out_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/gff3_out_stream.c -o obj/src/extended/gff3_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_out_stream.o
 cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/condenseq_creator.o
-cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_output.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/golomb.c -o obj/src/extended/golomb.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/gtdatahelp.c -o obj/src/extended/gtdatahelp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/extended || mkdir -p obj/src/extended
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/gtdatahelp.c -o obj/src/extended/gtdatahelp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/gtf_in_stream.c -o obj/src/extended/gtf_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/gff3_in_stream_plain.c -o obj/src/extended/gff3_in_stream_plain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_in_stream_plain.o
+cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_output.o
+cc -c src/extended/diagonalbandalign_affinegapcost.c -o obj/src/extended/diagonalbandalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/diagonalbandalign_affinegapcost.o
+test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/gtf_out_stream.c -o obj/src/extended/gtf_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_linesorted_out_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/gtdatahelp.c -o obj/src/extended/gtdatahelp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gtdatahelp.o
+cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/genome_node.c -o obj/src/extended/genome_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/genome_node.o
+cc -c src/extended/gtf_in_stream.c -o obj/src/extended/gtf_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gtf_in_stream.o
 cc -c src/extended/gtf_out_stream.c -o obj/src/extended/gtf_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gtf_out_stream.o
-cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_linesorted_out_stream.o
-cc -c src/extended/diagonalbandalign_affinegapcost.c -o obj/src/extended/diagonalbandalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/diagonalbandalign_affinegapcost.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/golomb.c -o obj/src/extended/golomb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/golomb.o
+test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/hcr.c -o obj/src/extended/hcr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/gtf_in_stream.c -o obj/src/extended/gtf_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gtf_in_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/hmm.c -o obj/src/extended/hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/hpol_processor.c -o obj/src/extended/hpol_processor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/globalchaining.o
-cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gtf_visitor.o
-cc -c src/extended/gff3_visitor.c -o obj/src/extended/gff3_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_visitor.o
 cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/id_to_md5_stream.c -o obj/src/extended/id_to_md5_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/globalchaining.o
+cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gtf_visitor.o
+cc -c src/extended/gff3_visitor.c -o obj/src/extended/gff3_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_visitor.o
+cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/encdesc.o
+cc -c src/extended/id_to_md5_stream.c -o obj/src/extended/id_to_md5_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/id_to_md5_stream.o
+cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_node.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/inter_feature_stream.c -o obj/src/extended/inter_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/inter_feature_visitor.c -o obj/src/extended/inter_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/inter_feature_stream.c -o obj/src/extended/inter_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/inter_feature_stream.o
-cc -c src/extended/intset.c -o obj/src/extended/intset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/id_to_md5_stream.c -o obj/src/extended/id_to_md5_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/id_to_md5_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/intset.c -o obj/src/extended/intset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/id_to_md5_visitor.o
+cc -c src/extended/inter_feature_stream.c -o obj/src/extended/inter_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/inter_feature_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/intset_32.c -o obj/src/extended/intset_32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/inter_feature_visitor.c -o obj/src/extended/inter_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/inter_feature_visitor.o
 cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gtf_parser.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/intset_combined.c -o obj/src/extended/intset_combined.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/inter_feature_visitor.c -o obj/src/extended/inter_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/inter_feature_visitor.o
-cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/id_to_md5_visitor.o
-cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_node.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/io_function_pointers.c -o obj/src/extended/io_function_pointers.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gtf_parser.o
 cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/intset.c -o obj/src/extended/intset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/intset.o
-cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/encdesc.o
 cc -c src/extended/intset_combined.c -o obj/src/extended/intset_combined.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/intset_combined.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/io_function_pointers.c -o obj/src/extended/io_function_pointers.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/io_function_pointers.o
 cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/io_function_pointers.c -o obj/src/extended/io_function_pointers.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/io_function_pointers.o
 cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/linspace_management.c -o obj/src/extended/linspace_management.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/load_stream.c -o obj/src/extended/load_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/hmm.c -o obj/src/extended/hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/hmm.o
+cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/huffcode.o
+cc -c src/extended/hpol_processor.c -o obj/src/extended/hpol_processor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/hpol_processor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/intset_16.o
 cc -c src/extended/intset_32.c -o obj/src/extended/intset_32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/intset_32.o
+cc -c src/extended/load_stream.c -o obj/src/extended/load_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/load_stream.o
+cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/intset_16.o
+cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/intset_8.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/luaserialize.c -o obj/src/extended/luaserialize.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/mapping.c -o obj/src/extended/mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/load_stream.c -o obj/src/extended/load_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/load_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/mapping.c -o obj/src/extended/mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/hcr.c -o obj/src/extended/hcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/hcr.o
 cc -c src/extended/match.c -o obj/src/extended/match.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/luahelper.o
-cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/intset_8.o
-cc -c src/extended/hpol_processor.c -o obj/src/extended/hpol_processor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/hpol_processor.o
-cc -c src/extended/hmm.c -o obj/src/extended/hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/hmm.o
+cc -c src/extended/editscript.c -o obj/src/extended/editscript.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/editscript.o
+cc -c src/extended/linspace_management.c -o obj/src/extended/linspace_management.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/linspace_management.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/mapping.c -o obj/src/extended/mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/mapping.o
-cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/huffcode.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/linspace_management.c -o obj/src/extended/linspace_management.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/linspace_management.o
+cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/match_iterator.c -o obj/src/extended/match_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/hcr.c -o obj/src/extended/hcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/hcr.o
+cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/luahelper.o
 cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/luaserialize.c -o obj/src/extended/luaserialize.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/luaserialize.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/match_iterator_open.c -o obj/src/extended/match_iterator_open.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/match_iterator_sw.c -o obj/src/extended/match_iterator_sw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/match_last.c -o obj/src/extended/match_last.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/match.c -o obj/src/extended/match.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match.o
 cc -c src/extended/match_iterator.c -o obj/src/extended/match_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_iterator.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/match.c -o obj/src/extended/match.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match.o
+cc -c src/extended/match_iterator_sw.c -o obj/src/extended/match_iterator_sw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/match_last.c -o obj/src/extended/match_last.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/luaserialize.c -o obj/src/extended/luaserialize.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/luaserialize.o
+cc -c src/extended/mapping.c -o obj/src/extended/mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/mapping.o
 cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/linearalign.o
+cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_blast.o
+test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/match_open.c -o obj/src/extended/match_open.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_blast.o
 cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/match_visitor.c -o obj/src/extended/match_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/match_iterator_open.c -o obj/src/extended/match_iterator_open.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_iterator_open.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_iterator_blast.o
 cc -c src/extended/match_last.c -o obj/src/extended/match_last.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_last.o
-cc -c src/extended/match_iterator_sw.c -o obj/src/extended/match_iterator_sw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_iterator_sw.o
-cc -c src/extended/match_iterator_open.c -o obj/src/extended/match_iterator_open.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_iterator_open.o
-cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/linearalign_affinegapcost.o
+test -d obj/src/extended || mkdir -p obj/src/extended
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/linearalign_affinegapcost.o
 cc -c src/extended/match_open.c -o obj/src/extended/match_open.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_open.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_iterator_blast.o
-cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_sw.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/match_iterator_sw.c -o obj/src/extended/match_iterator_sw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_iterator_sw.o
 cc -c src/extended/md5set.c -o obj/src/extended/md5set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/match_visitor.c -o obj/src/extended/match_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_visitor.o
-cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/md5_to_id_stream.o
-test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/merge_feature_stream.c -o obj/src/extended/merge_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/maxcoordvalue.o
+cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_sw.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/match_visitor.c -o obj/src/extended/match_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_visitor.o
 cc -c src/extended/merge_feature_visitor.c -o obj/src/extended/merge_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/md5_to_id_stream.o
+test -d obj/src/extended || mkdir -p obj/src/extended
 test -d obj/src/extended || mkdir -p obj/src/extended
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/merge_stream.c -o obj/src/extended/merge_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/meta_node.c -o obj/src/extended/meta_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/multi_sanitizer_visitor.c -o obj/src/extended/multi_sanitizer_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/editscript.c -o obj/src/extended/editscript.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/editscript.o
-cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_parser.o
-cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_iterator_last.o
 cc -c src/extended/merge_feature_stream.c -o obj/src/extended/merge_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/merge_feature_stream.o
-cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/md5_to_id_visitor.o
-cc -c src/extended/meta_node.c -o obj/src/extended/meta_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/meta_node.o
+cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/maxcoordvalue.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/multi_sanitizer_visitor.c -o obj/src/extended/multi_sanitizer_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/multi_sanitizer_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/mutate.c -o obj/src/extended/mutate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/kmer_database.o
+cc -c src/extended/mutate.c -o obj/src/extended/mutate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_iterator_last.o
 cc -c src/extended/node_stream.c -o obj/src/extended/node_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/md5_to_id_visitor.o
 cc -c src/extended/merge_feature_visitor.c -o obj/src/extended/merge_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/merge_feature_visitor.o
-cc -c src/extended/md5set.c -o obj/src/extended/md5set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/md5set.o
-cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/multi_sanitizer_visitor.c -o obj/src/extended/multi_sanitizer_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/multi_sanitizer_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/meta_node.c -o obj/src/extended/meta_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/meta_node.o
+cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_parser.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/merge_stream.c -o obj/src/extended/merge_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/merge_stream.o
-cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/kmer_database.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/mutate.c -o obj/src/extended/mutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/mutate.o
+cc -c src/extended/merge_stream.c -o obj/src/extended/merge_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/merge_stream.o
+cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/orf_finder_stream.c -o obj/src/extended/orf_finder_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/orf_finder_visitor.c -o obj/src/extended/orf_finder_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/node_stream.c -o obj/src/extended/node_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/node_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/md5set.c -o obj/src/extended/md5set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/md5set.o
 cc -c src/extended/orf_iterator.c -o obj/src/extended/orf_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/mutate.c -o obj/src/extended/mutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/mutate.o
 cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/obo_stanza.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/node_stream.c -o obj/src/extended/node_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/node_stream.o
 cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/orf_iterator.c -o obj/src/extended/orf_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/orf_iterator.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/node_visitor.o
-cc -c src/extended/orf_finder_stream.c -o obj/src/extended/orf_finder_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/orf_finder_stream.o
 cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/orf_finder_stream.c -o obj/src/extended/orf_finder_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/orf_finder_stream.o
 cc -c src/extended/ranked_list.c -o obj/src/extended/ranked_list.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/node_visitor.o
 cc -c src/extended/rbtree.c -o obj/src/extended/rbtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/obo_stanza.o
+cc -c src/extended/orf_iterator.c -o obj/src/extended/orf_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/orf_iterator.o
 cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/permute_words.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/rcr.c -o obj/src/extended/rcr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/orphanage.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/rcr.c -o obj/src/extended/rcr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/rdb.c -o obj/src/extended/rdb.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/orphanage.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/rdb_sqlite.c -o obj/src/extended/rdb_sqlite.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
@@ -2609,114 +2644,111 @@
 cc -c src/extended/orf_finder_visitor.c -o obj/src/extended/orf_finder_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/orf_finder_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/region_mapping.c -o obj/src/extended/region_mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/priority_queue.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/region_node.c -o obj/src/extended/region_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/priority_queue.o
+cc -c src/extended/ranked_list.c -o obj/src/extended/ranked_list.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/ranked_list.o
+cc -c src/extended/rdb_visitor.c -o obj/src/extended/rdb_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/rdb_visitor.o
+cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/obo_parse_tree.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/region_node_builder.c -o obj/src/extended/region_node_builder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/rdb_visitor.c -o obj/src/extended/rdb_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/rdb_visitor.o
 cc -c src/extended/regioncov_visitor.c -o obj/src/extended/regioncov_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/ranked_list.c -o obj/src/extended/ranked_list.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/ranked_list.o
-cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/obo_parse_tree.o
 cc -c src/extended/regular_seqid.c -o obj/src/extended/regular_seqid.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/popcount_tab.o
+cc -c src/extended/rdb.c -o obj/src/extended/rdb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/rdb.o
+cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/multieoplist.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/reverse.c -o obj/src/extended/reverse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/region_node.c -o obj/src/extended/region_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/region_node.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/rmq.c -o obj/src/extended/rmq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/region_node.c -o obj/src/extended/region_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/region_node.o
-cc -c src/extended/region_node_builder.c -o obj/src/extended/region_node_builder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/region_node_builder.o
-cc -c src/extended/rdb.c -o obj/src/extended/rdb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/rdb.o
+cc -c src/extended/rmq.c -o obj/src/extended/rmq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/safe_popen.c -o obj/src/extended/safe_popen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/rdb_sqlite.c -o obj/src/extended/rdb_sqlite.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/rdb_sqlite.o
+cc -c src/extended/region_node_builder.c -o obj/src/extended/region_node_builder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/region_node_builder.o
 cc -c src/extended/sam_alignment.c -o obj/src/extended/sam_alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/reverse.c -o obj/src/extended/reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/reverse.o
-cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/popcount_tab.o
-cc -c src/extended/regioncov_visitor.c -o obj/src/extended/regioncov_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/regioncov_visitor.o
+cc -c src/extended/reconstructalignment.c -o obj/src/extended/reconstructalignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/reconstructalignment.o
 cc -c src/extended/regular_seqid.c -o obj/src/extended/regular_seqid.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/regular_seqid.o
-cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/multieoplist.o
+cc -c src/extended/reverse.c -o obj/src/extended/reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/reverse.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/regioncov_visitor.c -o obj/src/extended/regioncov_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/regioncov_visitor.o
 cc -c src/extended/sam_query_name_iterator.c -o obj/src/extended/sam_query_name_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/reconstructalignment.c -o obj/src/extended/reconstructalignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/reconstructalignment.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/samfile_encseq_mapping.c -o obj/src/extended/samfile_encseq_mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/samfile_iterator.c -o obj/src/extended/samfile_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/rdb_sqlite.c -o obj/src/extended/rdb_sqlite.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/rdb_sqlite.o
-cc -c src/extended/safe_popen.c -o obj/src/extended/safe_popen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/safe_popen.o
+test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/sampling.c -o obj/src/extended/sampling.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/scorehandler.c -o obj/src/extended/scorehandler.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/script_filter.c -o obj/src/extended/script_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/sam_query_name_iterator.c -o obj/src/extended/sam_query_name_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sam_query_name_iterator.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/safe_popen.c -o obj/src/extended/safe_popen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/safe_popen.o
 cc -c src/extended/script_wrapper_stream.c -o obj/src/extended/script_wrapper_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/sam_query_name_iterator.c -o obj/src/extended/sam_query_name_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sam_query_name_iterator.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/script_wrapper_visitor.c -o obj/src/extended/script_wrapper_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/region_mapping.c -o obj/src/extended/region_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/region_mapping.o
-cc -c src/extended/samfile_encseq_mapping.c -o obj/src/extended/samfile_encseq_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/samfile_encseq_mapping.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/samfile_encseq_mapping.c -o obj/src/extended/samfile_encseq_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/samfile_encseq_mapping.o
 cc -c src/extended/samfile_iterator.c -o obj/src/extended/samfile_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/samfile_iterator.o
 cc -c src/extended/select_stream.c -o obj/src/extended/select_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/region_mapping.c -o obj/src/extended/region_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/region_mapping.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/sam_alignment.c -o obj/src/extended/sam_alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sam_alignment.o
-cc -c src/extended/select_visitor.c -o obj/src/extended/select_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/scorehandler.c -o obj/src/extended/scorehandler.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/scorehandler.o
 cc -c src/extended/script_wrapper_stream.c -o obj/src/extended/script_wrapper_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/script_wrapper_stream.o
+cc -c src/extended/select_visitor.c -o obj/src/extended/select_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/seqid2file.c -o obj/src/extended/seqid2file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/script_wrapper_visitor.c -o obj/src/extended/script_wrapper_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/script_wrapper_visitor.o
-cc -c src/extended/select_stream.c -o obj/src/extended/select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/select_stream.o
+cc -c src/extended/sam_alignment.c -o obj/src/extended/sam_alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sam_alignment.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/seqid2seqnum_mapping.c -o obj/src/extended/seqid2seqnum_mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/script_filter.c -o obj/src/extended/script_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/script_filter.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/script_wrapper_visitor.c -o obj/src/extended/script_wrapper_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/script_wrapper_visitor.o
+cc -c src/extended/select_stream.c -o obj/src/extended/select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/select_stream.o
 cc -c src/extended/seqpos_classifier.c -o obj/src/extended/seqpos_classifier.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/scorehandler.c -o obj/src/extended/scorehandler.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/scorehandler.o
-cc -c src/extended/script_filter.c -o obj/src/extended/script_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/script_filter.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/sequence_node.c -o obj/src/extended/sequence_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/sequence_node_add_stream.c -o obj/src/extended/sequence_node_add_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/sequence_node_out_stream.c -o obj/src/extended/sequence_node_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/sampling.c -o obj/src/extended/sampling.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sampling.o
+cc -c src/extended/sequence_node_out_stream.c -o obj/src/extended/sequence_node_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/sequence_node_out_visitor.c -o obj/src/extended/sequence_node_out_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/seqid2file.c -o obj/src/extended/seqid2file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/seqid2file.o
-cc -c src/extended/rmq.c -o obj/src/extended/rmq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/rmq.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/seqid2file.c -o obj/src/extended/seqid2file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/seqid2file.o
 cc -c src/extended/set_source_visitor.c -o obj/src/extended/set_source_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/shredder.c -o obj/src/extended/shredder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/rmq.c -o obj/src/extended/rmq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/rmq.o
 cc -c src/extended/sequence_node_add_stream.c -o obj/src/extended/sequence_node_add_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sequence_node_add_stream.o
+cc -c src/extended/shredder.c -o obj/src/extended/shredder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/sequence_node_out_stream.c -o obj/src/extended/sequence_node_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sequence_node_out_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/seqpos_classifier.c -o obj/src/extended/seqpos_classifier.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/seqpos_classifier.o
-cc -c src/extended/snp_annotator_stream.c -o obj/src/extended/snp_annotator_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/seqid2seqnum_mapping.c -o obj/src/extended/seqid2seqnum_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/seqid2seqnum_mapping.o
 cc -c src/extended/sequence_node.c -o obj/src/extended/sequence_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sequence_node.o
-cc -c src/extended/sequence_node_out_stream.c -o obj/src/extended/sequence_node_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sequence_node_out_stream.o
-cc -c src/extended/set_source_visitor.c -o obj/src/extended/set_source_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/set_source_visitor.o
-cc -c src/extended/sequence_node_out_visitor.c -o obj/src/extended/sequence_node_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sequence_node_out_visitor.o
+cc -c src/extended/snp_annotator_stream.c -o obj/src/extended/snp_annotator_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/snp_annotator_visitor.c -o obj/src/extended/snp_annotator_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/seqpos_classifier.c -o obj/src/extended/seqpos_classifier.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/seqpos_classifier.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/sort_stream.c -o obj/src/extended/sort_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/select_visitor.c -o obj/src/extended/select_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/select_visitor.o
+cc -c src/extended/set_source_visitor.c -o obj/src/extended/set_source_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/set_source_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/spec_results.c -o obj/src/extended/spec_results.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/seqid2seqnum_mapping.c -o obj/src/extended/seqid2seqnum_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/seqid2seqnum_mapping.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/spec_results.c -o obj/src/extended/spec_results.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/spec_visitor.c -o obj/src/extended/spec_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/shredder.c -o obj/src/extended/shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/shredder.o
+cc -c src/extended/select_visitor.c -o obj/src/extended/select_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/select_visitor.o
 cc -c src/extended/splice_site_info_stream.c -o obj/src/extended/splice_site_info_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/snp_annotator_stream.c -o obj/src/extended/snp_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/snp_annotator_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/splice_site_info_visitor.c -o obj/src/extended/splice_site_info_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/sort_stream.c -o obj/src/extended/sort_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sort_stream.o
+cc -c src/extended/sequence_node_out_visitor.c -o obj/src/extended/sequence_node_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sequence_node_out_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/splice_site_info_visitor.c -o obj/src/extended/splice_site_info_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/splicedseq.c -o obj/src/extended/splicedseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/squarealign.c -o obj/src/extended/squarealign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
@@ -2724,506 +2756,509 @@
 cc -c src/extended/sspliced_alignment.c -o obj/src/extended/sspliced_alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/sspliced_alignment_parsing.c -o obj/src/extended/sspliced_alignment_parsing.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/sort_stream.c -o obj/src/extended/sort_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sort_stream.o
+cc -c src/extended/snp_annotator_stream.c -o obj/src/extended/snp_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/snp_annotator_stream.o
+cc -c src/extended/shredder.c -o obj/src/extended/shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/shredder.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/stat_stream.c -o obj/src/extended/stat_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/splice_site_info_stream.c -o obj/src/extended/splice_site_info_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/splice_site_info_stream.o
+cc -c src/extended/sspliced_alignment.c -o obj/src/extended/sspliced_alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sspliced_alignment.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/stat_visitor.c -o obj/src/extended/stat_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/splice_site_info_stream.c -o obj/src/extended/splice_site_info_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/splice_site_info_stream.o
+cc -c src/extended/splice_site_info_visitor.c -o obj/src/extended/splice_site_info_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/splice_site_info_visitor.o
+cc -c src/extended/sspliced_alignment_parsing.c -o obj/src/extended/sspliced_alignment_parsing.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sspliced_alignment_parsing.o
+cc -c src/extended/snp_annotator_visitor.c -o obj/src/extended/snp_annotator_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/snp_annotator_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/splicedseq.c -o obj/src/extended/splicedseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/splicedseq.o
 cc -c src/extended/stream_evaluator.c -o obj/src/extended/stream_evaluator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/string_matching.c -o obj/src/extended/string_matching.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/swalign.c -o obj/src/extended/swalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/splice_site_info_visitor.c -o obj/src/extended/splice_site_info_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/splice_site_info_visitor.o
-cc -c src/extended/sspliced_alignment.c -o obj/src/extended/sspliced_alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sspliced_alignment.o
 cc -c src/extended/stat_stream.c -o obj/src/extended/stat_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/stat_stream.o
-cc -c src/extended/snp_annotator_visitor.c -o obj/src/extended/snp_annotator_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/snp_annotator_visitor.o
-cc -c src/extended/sspliced_alignment_parsing.c -o obj/src/extended/sspliced_alignment_parsing.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/sspliced_alignment_parsing.o
-cc -c src/extended/splicedseq.c -o obj/src/extended/splicedseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/splicedseq.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/tag_value_map.c -o obj/src/extended/tag_value_map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/stat_visitor.c -o obj/src/extended/stat_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/stat_visitor.o
 cc -c src/extended/targetbest_select_stream.c -o obj/src/extended/targetbest_select_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/spec_results.c -o obj/src/extended/spec_results.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/spec_results.o
 cc -c src/extended/tidy_region_node_stream.c -o obj/src/extended/tidy_region_node_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/spec_visitor.c -o obj/src/extended/spec_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/spec_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/spec_results.c -o obj/src/extended/spec_results.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/spec_results.o
+cc -c src/extended/squarealign.c -o obj/src/extended/squarealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/squarealign.o
 cc -c src/extended/tidy_region_node_visitor.c -o obj/src/extended/tidy_region_node_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/swalign.c -o obj/src/extended/swalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/swalign.o
 test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/stat_visitor.c -o obj/src/extended/stat_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/stat_visitor.o
 cc -c src/extended/tir_stream.c -o obj/src/extended/tir_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/string_matching.c -o obj/src/extended/string_matching.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/string_matching.o
 cc -c src/extended/transcript_bittabs.c -o obj/src/extended/transcript_bittabs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/squarealign.c -o obj/src/extended/squarealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/squarealign.o
 cc -c src/extended/tidy_region_node_stream.c -o obj/src/extended/tidy_region_node_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/tidy_region_node_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/transcript_counts.c -o obj/src/extended/transcript_counts.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/rbtree.c -o obj/src/extended/rbtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/rbtree.o
+cc -c src/extended/swalign.c -o obj/src/extended/swalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/swalign.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/transcript_evaluators.c -o obj/src/extended/transcript_evaluators.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/targetbest_select_stream.c -o obj/src/extended/targetbest_select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/targetbest_select_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/transcript_exons.c -o obj/src/extended/transcript_exons.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/transcript_used_exons.c -o obj/src/extended/transcript_used_exons.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/targetbest_select_stream.c -o obj/src/extended/targetbest_select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/targetbest_select_stream.o
+cc -c src/extended/transcript_bittabs.c -o obj/src/extended/transcript_bittabs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/transcript_bittabs.o
+cc -c src/core/encseq.c -o obj/src/core/encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq.o
+cc -c src/extended/tidy_region_node_visitor.c -o obj/src/extended/tidy_region_node_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/tidy_region_node_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/rbtree.c -o obj/src/extended/rbtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/rbtree.o
 cc -c src/extended/type_checker.c -o obj/src/extended/type_checker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/tidy_region_node_visitor.c -o obj/src/extended/tidy_region_node_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/tidy_region_node_visitor.o
-cc -c src/extended/transcript_bittabs.c -o obj/src/extended/transcript_bittabs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/transcript_bittabs.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/transcript_evaluators.c -o obj/src/extended/transcript_evaluators.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/transcript_evaluators.o
+test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/type_checker_builtin.c -o obj/src/extended/type_checker_builtin.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/rcr.c -o obj/src/extended/rcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/rcr.o
+cc -c src/extended/transcript_evaluators.c -o obj/src/extended/transcript_evaluators.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/transcript_evaluators.o
 cc -c src/extended/transcript_counts.c -o obj/src/extended/transcript_counts.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/transcript_counts.o
+cc -c src/extended/spec_visitor.c -o obj/src/extended/spec_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/spec_visitor.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/type_graph.c -o obj/src/extended/type_graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/extended/transcript_exons.c -o obj/src/extended/transcript_exons.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/transcript_exons.o
-cc -c src/extended/transcript_used_exons.c -o obj/src/extended/transcript_used_exons.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/transcript_used_exons.o
-test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/type_node.c -o obj/src/extended/type_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/extended || mkdir -p obj/src/extended
+cc -c src/extended/string_matching.c -o obj/src/extended/string_matching.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/string_matching.o
+cc -c src/extended/transcript_used_exons.c -o obj/src/extended/transcript_used_exons.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/transcript_used_exons.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/typecheck_info.c -o obj/src/extended/typecheck_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/uint64hashtable.c -o obj/src/extended/uint64hashtable.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/type_checker.c -o obj/src/extended/type_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/type_checker.o
-cc -c src/extended/type_checker_builtin.c -o obj/src/extended/type_checker_builtin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/type_checker_builtin.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/union_find.c -o obj/src/extended/union_find.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/rcr.c -o obj/src/extended/rcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/rcr.o
+cc -c src/extended/union_find.c -o obj/src/extended/union_find.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/type_checker_builtin.c -o obj/src/extended/type_checker_builtin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/type_checker_builtin.o
 cc -c src/extended/uniq_stream.c -o obj/src/extended/uniq_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/type_checker.c -o obj/src/extended/type_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/type_checker.o
+cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/type_checker_obo.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/visitor_stream.c -o obj/src/extended/visitor_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/wtree.c -o obj/src/extended/wtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/typecheck_info.c -o obj/src/extended/typecheck_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/typecheck_info.o
-cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/type_checker_obo.o
 test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/wtree_encseq.c -o obj/src/extended/wtree_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/tag_value_map.c -o obj/src/extended/tag_value_map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/tag_value_map.o
+cc -c src/extended/xrf_abbr_entry.c -o obj/src/extended/xrf_abbr_entry.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/typecheck_info.c -o obj/src/extended/typecheck_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/typecheck_info.o
+test -d obj/src/extended || mkdir -p obj/src/extended
 cc -c src/extended/type_graph.c -o obj/src/extended/type_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/type_graph.o
+cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/uniq_stream.c -o obj/src/extended/uniq_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/uniq_stream.o
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/xrf_abbr_entry.c -o obj/src/extended/xrf_abbr_entry.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/union_find.c -o obj/src/extended/union_find.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/union_find.o
 cc -c src/extended/type_node.c -o obj/src/extended/type_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/type_node.o
 cc -c src/extended/visitor_stream.c -o obj/src/extended/visitor_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/visitor_stream.o
-test -d obj/src/extended || mkdir -p obj/src/extended
-test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/wtree.c -o obj/src/extended/wtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/wtree.o
 cc -c src/extended/xrf_checker.c -o obj/src/extended/xrf_checker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/extended || mkdir -p obj/src/extended
-cc -c src/extended/uniq_stream.c -o obj/src/extended/uniq_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/uniq_stream.o
-cc -c src/extended/wtree.c -o obj/src/extended/wtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/wtree.o
-test -d obj/src/gtlua || mkdir -p obj/src/gtlua
 cc -c src/extended/xrfcheck_info.c -o obj/src/extended/xrfcheck_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gtlua/alphabet_lua.c -o obj/src/gtlua/alphabet_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
-cc -c src/extended/union_find.c -o obj/src/extended/union_find.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/union_find.o
-cc -c src/extended/tir_stream.c -o obj/src/extended/tir_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/tir_stream.o
-cc -c src/extended/xrf_abbr_entry.c -o obj/src/extended/xrf_abbr_entry.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/xrf_abbr_entry.o
+test -d obj/src/gtlua || mkdir -p obj/src/gtlua
+cc -c src/gtlua/alphabet_lua.c -o obj/src/gtlua/alphabet_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gtlua/annotationsketch_lua.c -o obj/src/gtlua/annotationsketch_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/xrf_abbr_entry.c -o obj/src/extended/xrf_abbr_entry.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/xrf_abbr_entry.o
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
 cc -c src/gtlua/bittab_lua.c -o obj/src/gtlua/bittab_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
+cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
 cc -c src/extended/uint64hashtable.c -o obj/src/extended/uint64hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/uint64hashtable.o
-cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/xrf_checker.c -o obj/src/extended/xrf_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/xrf_checker.o
-cc -c src/gtlua/annotationsketch_lua.c -o obj/src/gtlua/annotationsketch_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/annotationsketch_lua.o
 cc -c src/gtlua/cds_stream_lua.c -o obj/src/gtlua/cds_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/xrfcheck_info.c -o obj/src/extended/xrfcheck_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/xrfcheck_info.o
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
+cc -c src/gtlua/annotationsketch_lua.c -o obj/src/gtlua/annotationsketch_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/annotationsketch_lua.o
 cc -c src/gtlua/csa_stream_lua.c -o obj/src/gtlua/csa_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
-cc -c src/gtlua/alphabet_lua.c -o obj/src/gtlua/alphabet_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/alphabet_lua.o
-cc -c src/gtlua/cds_stream_lua.c -o obj/src/gtlua/cds_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/cds_stream_lua.o
+cc -c src/extended/xrf_checker.c -o obj/src/extended/xrf_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/xrf_checker.o
+cc -c src/extended/xrfcheck_info.c -o obj/src/extended/xrfcheck_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/xrfcheck_info.o
 cc -c src/gtlua/diagram_lua.c -o obj/src/gtlua/diagram_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/gtlua || mkdir -p obj/src/gtlua
-cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/canvas_lua.o
-cc -c src/gtlua/encseq_lua.c -o obj/src/gtlua/encseq_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/xrf_abbr_parse_tree.o
+cc -c src/extended/tir_stream.c -o obj/src/extended/tir_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/tir_stream.o
 cc -c src/gtlua/bittab_lua.c -o obj/src/gtlua/bittab_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/bittab_lua.o
+cc -c src/gtlua/alphabet_lua.c -o obj/src/gtlua/alphabet_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/alphabet_lua.o
+test -d obj/src/gtlua || mkdir -p obj/src/gtlua
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
+cc -c src/gtlua/encseq_lua.c -o obj/src/gtlua/encseq_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gtlua/feature_index_lua.c -o obj/src/gtlua/feature_index_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
+cc -c src/gtlua/cds_stream_lua.c -o obj/src/gtlua/cds_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/cds_stream_lua.o
 cc -c src/gtlua/feature_node_iterator_lua.c -o obj/src/gtlua/feature_node_iterator_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/stream_evaluator.c -o obj/src/extended/stream_evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/stream_evaluator.o
+cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/canvas_lua.o
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
 cc -c src/gtlua/csa_stream_lua.c -o obj/src/gtlua/csa_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/csa_stream_lua.o
 cc -c src/gtlua/feature_stream_lua.c -o obj/src/gtlua/feature_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
+cc -c src/extended/stream_evaluator.c -o obj/src/extended/stream_evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/stream_evaluator.o
 cc -c src/gtlua/feature_visitor_lua.c -o obj/src/gtlua/feature_visitor_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
-cc -c src/gtlua/diagram_lua.c -o obj/src/gtlua/diagram_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/diagram_lua.o
-test -d obj/src/gtlua || mkdir -p obj/src/gtlua
 cc -c src/gtlua/genome_node_lua.c -o obj/src/gtlua/genome_node_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gtlua/genome_stream_lua.c -o obj/src/gtlua/genome_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
-cc -c src/gtlua/feature_node_iterator_lua.c -o obj/src/gtlua/feature_node_iterator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/feature_node_iterator_lua.o
-cc -c src/gtlua/feature_visitor_lua.c -o obj/src/gtlua/feature_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/feature_visitor_lua.o
-cc -c src/gtlua/feature_stream_lua.c -o obj/src/gtlua/feature_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/feature_stream_lua.o
+cc -c src/gtlua/genome_stream_lua.c -o obj/src/gtlua/genome_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/xrf_abbr_parse_tree.o
+cc -c src/gtlua/diagram_lua.c -o obj/src/gtlua/diagram_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/diagram_lua.o
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
 cc -c src/gtlua/genome_visitor_lua.c -o obj/src/gtlua/genome_visitor_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gtlua/gt_lua.c -o obj/src/gtlua/gt_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
+cc -c src/gtlua/gt_lua.c -o obj/src/gtlua/gt_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gtlua/feature_stream_lua.c -o obj/src/gtlua/feature_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/feature_stream_lua.o
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
 cc -c src/gtlua/gtcore_lua.c -o obj/src/gtlua/gtcore_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gtlua/feature_index_lua.c -o obj/src/gtlua/feature_index_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/feature_index_lua.o
+cc -c src/gtlua/feature_node_iterator_lua.c -o obj/src/gtlua/feature_node_iterator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/feature_node_iterator_lua.o
+test -d obj/src/gtlua || mkdir -p obj/src/gtlua
 cc -c src/gtlua/gtext_lua.c -o obj/src/gtlua/gtext_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
+cc -c src/gtlua/feature_visitor_lua.c -o obj/src/gtlua/feature_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/feature_visitor_lua.o
 cc -c src/gtlua/image_info_lua.c -o obj/src/gtlua/image_info_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/extended/wtree_encseq.c -o obj/src/extended/wtree_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/wtree_encseq.o
-cc -c src/gtlua/gt_lua.c -o obj/src/gtlua/gt_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/gt_lua.o
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
-cc -c src/core/encseq.c -o obj/src/core/encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq.o
 cc -c src/gtlua/layout_lua.c -o obj/src/gtlua/layout_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gtlua/gt_lua.c -o obj/src/gtlua/gt_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/gt_lua.o
 cc -c src/gtlua/gtcore_lua.c -o obj/src/gtlua/gtcore_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/gtcore_lua.o
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
+cc -c src/extended/wtree_encseq.c -o obj/src/extended/wtree_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/wtree_encseq.o
 cc -c src/gtlua/mathsupport_lua.c -o obj/src/gtlua/mathsupport_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gtlua/gtext_lua.c -o obj/src/gtlua/gtext_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/gtext_lua.o
+cc -c src/gtlua/feature_index_lua.c -o obj/src/gtlua/feature_index_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/feature_index_lua.o
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
 cc -c src/gtlua/range_lua.c -o obj/src/gtlua/range_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
-cc -c src/gtlua/genome_stream_lua.c -o obj/src/gtlua/genome_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/genome_stream_lua.o
 cc -c src/gtlua/region_mapping_lua.c -o obj/src/gtlua/region_mapping_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gtlua/genome_visitor_lua.c -o obj/src/gtlua/genome_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/genome_visitor_lua.o
-cc -c src/gtlua/layout_lua.c -o obj/src/gtlua/layout_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/layout_lua.o
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
 cc -c src/gtlua/score_matrix_lua.c -o obj/src/gtlua/score_matrix_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
 cc -c src/gtlua/stream_evaluator_lua.c -o obj/src/gtlua/stream_evaluator_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gtlua/genome_stream_lua.c -o obj/src/gtlua/genome_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/genome_stream_lua.o
+cc -c src/gtlua/genome_visitor_lua.c -o obj/src/gtlua/genome_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/genome_visitor_lua.o
 cc -c src/gtlua/image_info_lua.c -o obj/src/gtlua/image_info_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/image_info_lua.o
-cc -c src/gtlua/mathsupport_lua.c -o obj/src/gtlua/mathsupport_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/mathsupport_lua.o
+cc -c src/gtlua/layout_lua.c -o obj/src/gtlua/layout_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/layout_lua.o
 test -d obj/src/gtlua || mkdir -p obj/src/gtlua
 cc -c src/gtlua/translate_lua.c -o obj/src/gtlua/translate_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/gtlua/mathsupport_lua.c -o obj/src/gtlua/mathsupport_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/mathsupport_lua.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/apmeoveridx.c -o obj/src/match/apmeoveridx.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/asqg_writer.c -o obj/src/match/asqg_writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/asqg_writer.c -o obj/src/match/asqg_writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/bare-encseq.c -o obj/src/match/bare-encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/bcktab.c -o obj/src/match/bcktab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gtlua/region_mapping_lua.c -o obj/src/gtlua/region_mapping_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/region_mapping_lua.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/gtlua/stream_evaluator_lua.c -o obj/src/gtlua/stream_evaluator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/stream_evaluator_lua.o
 cc -c src/match/cgr_spacedseed.c -o obj/src/match/cgr_spacedseed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gtlua/score_matrix_lua.c -o obj/src/gtlua/score_matrix_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/score_matrix_lua.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/gtlua/stream_evaluator_lua.c -o obj/src/gtlua/stream_evaluator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/stream_evaluator_lua.o
-cc -c src/gtlua/range_lua.c -o obj/src/gtlua/range_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/range_lua.o
 cc -c src/gtlua/translate_lua.c -o obj/src/gtlua/translate_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/translate_lua.o
 cc -c src/match/chain2dim.c -o obj/src/match/chain2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gtlua/score_matrix_lua.c -o obj/src/gtlua/score_matrix_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/score_matrix_lua.o
-cc -c src/gtlua/genome_node_lua.c -o obj/src/gtlua/genome_node_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/genome_node_lua.o
-cc -c src/gtlua/encseq_lua.c -o obj/src/gtlua/encseq_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/encseq_lua.o
+cc -c src/gtlua/range_lua.c -o obj/src/gtlua/range_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/range_lua.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/gtlua/region_mapping_lua.c -o obj/src/gtlua/region_mapping_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/region_mapping_lua.o
 cc -c src/match/chainofin.c -o obj/src/match/chainofin.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/asqg_writer.c -o obj/src/match/asqg_writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/asqg_writer.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/cutendpfx.c -o obj/src/match/cutendpfx.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/cutendpfx.c -o obj/src/match/cutendpfx.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/diagband-struct.c -o obj/src/match/diagband-struct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/cgr_spacedseed.c -o obj/src/match/cgr_spacedseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/cgr_spacedseed.o
+cc -c src/match/asqg_writer.c -o obj/src/match/asqg_writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/asqg_writer.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/diagbandseed.c -o obj/src/match/diagbandseed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/chainofin.c -o obj/src/match/chainofin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/chainofin.o
+cc -c src/match/apmeoveridx.c -o obj/src/match/apmeoveridx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/apmeoveridx.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/dist-short.c -o obj/src/match/dist-short.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/apmeoveridx.c -o obj/src/match/apmeoveridx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/apmeoveridx.o
+cc -c src/match/dist-short.c -o obj/src/match/dist-short.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/echoseq.c -o obj/src/match/echoseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/chainofin.c -o obj/src/match/chainofin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/chainofin.o
 cc -c src/match/eis-blockcomp-param.c -o obj/src/match/eis-blockcomp-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gtlua/encseq_lua.c -o obj/src/gtlua/encseq_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/encseq_lua.o
+cc -c src/gtlua/genome_node_lua.c -o obj/src/gtlua/genome_node_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtlua/genome_node_lua.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/cutendpfx.c -o obj/src/match/cutendpfx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/cutendpfx.o
 cc -c src/match/eis-blockcomp.c -o obj/src/match/eis-blockcomp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/cutendpfx.c -o obj/src/match/cutendpfx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/cutendpfx.o
+cc -c src/match/cgr_spacedseed.c -o obj/src/match/cgr_spacedseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/cgr_spacedseed.o
+cc -c src/match/bare-encseq.c -o obj/src/match/bare-encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/bare-encseq.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/eis-bwtseq-construct.c -o obj/src/match/eis-bwtseq-construct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/bare-encseq.c -o obj/src/match/bare-encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/bare-encseq.o
 cc -c src/match/eis-bwtseq-context-param.c -o obj/src/match/eis-bwtseq-context-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/eis-blockcomp-param.c -o obj/src/match/eis-blockcomp-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-blockcomp-param.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/eis-bwtseq-context.c -o obj/src/match/eis-bwtseq-context.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/echoseq.c -o obj/src/match/echoseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/echoseq.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/eis-bwtseq-extinfo.c -o obj/src/match/eis-bwtseq-extinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/eis-blockcomp-param.c -o obj/src/match/eis-blockcomp-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-blockcomp-param.o
+cc -c src/match/dist-short.c -o obj/src/match/dist-short.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/dist-short.o
+cc -c src/match/echoseq.c -o obj/src/match/echoseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/echoseq.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/diagband-struct.c -o obj/src/match/diagband-struct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/diagband-struct.o
 cc -c src/match/eis-bwtseq-param.c -o obj/src/match/eis-bwtseq-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/dist-short.c -o obj/src/match/dist-short.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/dist-short.o
+cc -c src/match/eis-bwtseq-context-param.c -o obj/src/match/eis-bwtseq-context-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-bwtseq-context-param.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/eis-bwtseq-sass.c -o obj/src/match/eis-bwtseq-sass.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/eis-bwtseq-context-param.c -o obj/src/match/eis-bwtseq-context-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-bwtseq-context-param.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/eis-bwtseq.c -o obj/src/match/eis-bwtseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/eis-encidxseq-construct.c -o obj/src/match/eis-encidxseq-construct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/diagband-struct.c -o obj/src/match/diagband-struct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/diagband-struct.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/eis-encidxseq-param.c -o obj/src/match/eis-encidxseq-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/eis-encidxseq-param.c -o obj/src/match/eis-encidxseq-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/eis-encidxseq.c -o obj/src/match/eis-encidxseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/eis-mrangealphabet.c -o obj/src/match/eis-mrangealphabet.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/eis-bwtseq-param.c -o obj/src/match/eis-bwtseq-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-bwtseq-param.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/eis-sa-common.c -o obj/src/match/eis-sa-common.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/eis-bwtseq-param.c -o obj/src/match/eis-bwtseq-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-bwtseq-param.o
+cc -c src/match/eis-bwtseq-construct.c -o obj/src/match/eis-bwtseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-bwtseq-construct.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/eis-seqblocktranslate.c -o obj/src/match/eis-seqblocktranslate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/eis-bwtseq-construct.c -o obj/src/match/eis-bwtseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-bwtseq-construct.o
 cc -c src/match/eis-encidxseq-param.c -o obj/src/match/eis-encidxseq-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-encidxseq-param.o
+cc -c src/match/eis-bwtseq-sass.c -o obj/src/match/eis-bwtseq-sass.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-bwtseq-sass.o
+cc -c src/match/eis-encidxseq-construct.c -o obj/src/match/eis-encidxseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-encidxseq-construct.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/eis-seqranges.c -o obj/src/match/eis-seqranges.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/bcktab.c -o obj/src/match/bcktab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/bcktab.o
 cc -c src/match/eis-sequencemultiread.c -o obj/src/match/eis-sequencemultiread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/chain2dim.c -o obj/src/match/chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/chain2dim.o
-cc -c src/match/eis-bwtseq-sass.c -o obj/src/match/eis-bwtseq-sass.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-bwtseq-sass.o
 cc -c src/match/eis-sa-common.c -o obj/src/match/eis-sa-common.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-sa-common.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/eis-specialsrank.c -o obj/src/match/eis-specialsrank.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/bcktab.c -o obj/src/match/bcktab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/bcktab.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/eis-suffixarray-interface.c -o obj/src/match/eis-suffixarray-interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/eis-encidxseq-construct.c -o obj/src/match/eis-encidxseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-encidxseq-construct.o
-test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/chain2dim.c -o obj/src/match/chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/chain2dim.o
+cc -c src/match/eis-mrangealphabet.c -o obj/src/match/eis-mrangealphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-mrangealphabet.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/eis-suffixerator-interface.c -o obj/src/match/eis-suffixerator-interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/eis-voiditf.c -o obj/src/match/eis-voiditf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/eis-bwtseq-context.c -o obj/src/match/eis-bwtseq-context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-bwtseq-context.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/encseq2offset.c -o obj/src/match/encseq2offset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/enum-patt.c -o obj/src/match/enum-patt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/eis-encidxseq.c -o obj/src/match/eis-encidxseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-encidxseq.o
 cc -c src/match/eis-sequencemultiread.c -o obj/src/match/eis-sequencemultiread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-sequencemultiread.o
-cc -c src/match/eis-bwtseq-context.c -o obj/src/match/eis-bwtseq-context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-bwtseq-context.o
-cc -c src/match/eis-specialsrank.c -o obj/src/match/eis-specialsrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-specialsrank.o
-cc -c src/match/eis-mrangealphabet.c -o obj/src/match/eis-mrangealphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-mrangealphabet.o
+test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/enum-patt.c -o obj/src/match/enum-patt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/esa-bottomup.c -o obj/src/match/esa-bottomup.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/eis-seqblocktranslate.c -o obj/src/match/eis-seqblocktranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-seqblocktranslate.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/esa-dfs.c -o obj/src/match/esa-dfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/eis-specialsrank.c -o obj/src/match/eis-specialsrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-specialsrank.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/esa-lcpintervals.c -o obj/src/match/esa-lcpintervals.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/eis-suffixarray-interface.c -o obj/src/match/eis-suffixarray-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-suffixarray-interface.o
-cc -c src/match/enum-patt.c -o obj/src/match/enum-patt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/enum-patt.o
+cc -c src/match/esa-lcpintervals.c -o obj/src/match/esa-lcpintervals.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/esa-map.c -o obj/src/match/esa-map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/encseq2offset.c -o obj/src/match/encseq2offset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/encseq2offset.o
-cc -c src/match/eis-seqblocktranslate.c -o obj/src/match/eis-seqblocktranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-seqblocktranslate.o
-test -d obj/src/match || mkdir -p obj/src/match
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/esa-maxpairs.c -o obj/src/match/esa-maxpairs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/esa-merge.c -o obj/src/match/esa-merge.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/enum-patt.c -o obj/src/match/enum-patt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/enum-patt.o
+cc -c src/match/eis-bwtseq-extinfo.c -o obj/src/match/eis-bwtseq-extinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-bwtseq-extinfo.o
+cc -c src/match/encseq2offset.c -o obj/src/match/encseq2offset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/encseq2offset.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/eis-seqranges.c -o obj/src/match/eis-seqranges.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-seqranges.o
 cc -c src/match/esa-minunique.c -o obj/src/match/esa-minunique.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/eis-suffixerator-interface.c -o obj/src/match/eis-suffixerator-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-suffixerator-interface.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/esa-mmsearch.c -o obj/src/match/esa-mmsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/eis-suffixerator-interface.c -o obj/src/match/eis-suffixerator-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-suffixerator-interface.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/esa-scanprj.c -o obj/src/match/esa-scanprj.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/eis-bwtseq-extinfo.c -o obj/src/match/eis-bwtseq-extinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-bwtseq-extinfo.o
+cc -c src/match/esa-dfs.c -o obj/src/match/esa-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-dfs.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/eis-bwtseq.c -o obj/src/match/eis-bwtseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-bwtseq.o
 cc -c src/match/esa-seqread.c -o obj/src/match/esa-seqread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/esa-lcpintervals.c -o obj/src/match/esa-lcpintervals.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-lcpintervals.o
+cc -c src/match/esa-merge.c -o obj/src/match/esa-merge.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-merge.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/esa-shulen.c -o obj/src/match/esa-shulen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/esa-map.c -o obj/src/match/esa-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-map.o
-cc -c src/match/eis-seqranges.c -o obj/src/match/eis-seqranges.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-seqranges.o
-cc -c src/match/esa-dfs.c -o obj/src/match/esa-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-dfs.o
-cc -c src/match/esa-minunique.c -o obj/src/match/esa-minunique.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-minunique.o
-cc -c src/match/esa-lcpintervals.c -o obj/src/match/esa-lcpintervals.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-lcpintervals.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/esa-splititv-simple.c -o obj/src/match/esa-splititv-simple.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/esa-merge.c -o obj/src/match/esa-merge.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-merge.o
-cc -c src/match/esa-scanprj.c -o obj/src/match/esa-scanprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-scanprj.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/esa-splititv.c -o obj/src/match/esa-splititv.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/esa-map.c -o obj/src/match/esa-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-map.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/esa-bottomup.c -o obj/src/match/esa-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-bottomup.o
 cc -c src/match/esa-spmitvs.c -o obj/src/match/esa-spmitvs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/esa-scanprj.c -o obj/src/match/esa-scanprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-scanprj.o
+cc -c src/match/esa-bottomup.c -o obj/src/match/esa-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-bottomup.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/esa-spmsk.c -o obj/src/match/esa-spmsk.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/esa-minunique.c -o obj/src/match/esa-minunique.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-minunique.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/esa_lcpintervals_visitor.c -o obj/src/match/esa_lcpintervals_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/esa-seqread.c -o obj/src/match/esa-seqread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-seqread.o
+cc -c src/match/esa-splititv-simple.c -o obj/src/match/esa-splititv-simple.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-splititv-simple.o
+cc -c src/match/eis-voiditf.c -o obj/src/match/eis-voiditf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-voiditf.o
+cc -c src/match/esa-spmitvs.c -o obj/src/match/esa-spmitvs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-spmitvs.o
 cc -c src/match/esa_spmitvs_visitor.c -o obj/src/match/esa_spmitvs_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/esa_lcpintervals_visitor.c -o obj/src/match/esa_lcpintervals_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa_lcpintervals_visitor.o
 cc -c src/match/esa_visitor.c -o obj/src/match/esa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/esa-seqread.c -o obj/src/match/esa-seqread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-seqread.o
+cc -c src/match/esa-splititv.c -o obj/src/match/esa-splititv.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-splititv.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/firstcodes-accum.c -o obj/src/match/firstcodes-accum.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/esa-splititv-simple.c -o obj/src/match/esa-splititv-simple.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-splititv-simple.o
-cc -c src/match/esa_lcpintervals_visitor.c -o obj/src/match/esa_lcpintervals_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa_lcpintervals_visitor.o
-cc -c src/match/esa-spmitvs.c -o obj/src/match/esa-spmitvs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-spmitvs.o
-cc -c src/match/eis-bwtseq.c -o obj/src/match/eis-bwtseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-bwtseq.o
-cc -c src/match/esa-splititv.c -o obj/src/match/esa-splititv.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-splititv.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/firstcodes-cache.c -o obj/src/match/firstcodes-cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/firstcodes-insert.c -o obj/src/match/firstcodes-insert.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/firstcodes-psbuf.c -o obj/src/match/firstcodes-psbuf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/eis-voiditf.c -o obj/src/match/eis-voiditf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-voiditf.o
-cc -c src/match/esa_visitor.c -o obj/src/match/esa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa_visitor.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/firstcodes-scan.c -o obj/src/match/firstcodes-scan.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/esa_spmitvs_visitor.c -o obj/src/match/esa_spmitvs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa_spmitvs_visitor.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/firstcodes-spacelog.c -o obj/src/match/firstcodes-spacelog.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/firstcodes-tab.c -o obj/src/match/firstcodes-tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/esa_visitor.c -o obj/src/match/esa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa_visitor.o
+cc -c src/match/esa_spmitvs_visitor.c -o obj/src/match/esa_spmitvs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa_spmitvs_visitor.o
+cc -c src/match/esa-spmsk.c -o obj/src/match/esa-spmsk.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-spmsk.o
+cc -c src/match/firstcodes-psbuf.c -o obj/src/match/firstcodes-psbuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/firstcodes-psbuf.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/firstcodes-cache.c -o obj/src/match/firstcodes-cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/firstcodes-cache.o
 cc -c src/match/firstcodes.c -o obj/src/match/firstcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/firstcodes-psbuf.c -o obj/src/match/firstcodes-psbuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/firstcodes-psbuf.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/fmi-fwduni.c -o obj/src/match/fmi-fwduni.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/esa-maxpairs.c -o obj/src/match/esa-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-maxpairs.o
+cc -c src/match/esa-mmsearch.c -o obj/src/match/esa-mmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-mmsearch.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/fmi-keyval.c -o obj/src/match/fmi-keyval.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/firstcodes-cache.c -o obj/src/match/firstcodes-cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/firstcodes-cache.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/fmi-locate.c -o obj/src/match/fmi-locate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/esa-mmsearch.c -o obj/src/match/esa-mmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-mmsearch.o
-cc -c src/match/esa-spmsk.c -o obj/src/match/esa-spmsk.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-spmsk.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/fmi-map.c -o obj/src/match/fmi-map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/fmi-mapspec.c -o obj/src/match/fmi-mapspec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/fmi-mapspec.c -o obj/src/match/fmi-mapspec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/firstcodes-spacelog.c -o obj/src/match/firstcodes-spacelog.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/firstcodes-spacelog.o
 cc -c src/match/fmi-mkindex.c -o obj/src/match/fmi-mkindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/fmi-keyval.c -o obj/src/match/fmi-keyval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/fmi-keyval.o
+cc -c src/match/esa-shulen.c -o obj/src/match/esa-shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-shulen.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/fmi-mapspec.c -o obj/src/match/fmi-mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/fmi-mapspec.o
 cc -c src/match/fmi-save.c -o obj/src/match/fmi-save.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/esa-maxpairs.c -o obj/src/match/esa-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-maxpairs.o
-cc -c src/match/firstcodes-spacelog.c -o obj/src/match/firstcodes-spacelog.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/firstcodes-spacelog.o
+cc -c src/match/fmi-map.c -o obj/src/match/fmi-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/fmi-map.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/fmi-mapspec.c -o obj/src/match/fmi-mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/fmi-mapspec.o
 cc -c src/match/fmi-sufbwtstream.c -o obj/src/match/fmi-sufbwtstream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/firstcodes-accum.c -o obj/src/match/firstcodes-accum.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/firstcodes-accum.o
-cc -c src/match/fmi-locate.c -o obj/src/match/fmi-locate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/fmi-locate.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/ft-eoplist.c -o obj/src/match/ft-eoplist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/fmi-locate.c -o obj/src/match/fmi-locate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/fmi-locate.o
+cc -c src/match/firstcodes-accum.c -o obj/src/match/firstcodes-accum.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/firstcodes-accum.o
 cc -c src/match/fmi-mkindex.c -o obj/src/match/fmi-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/fmi-mkindex.o
-cc -c src/match/esa-shulen.c -o obj/src/match/esa-shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/esa-shulen.o
-cc -c src/match/fmi-fwduni.c -o obj/src/match/fmi-fwduni.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/fmi-fwduni.o
-cc -c src/match/fmi-map.c -o obj/src/match/fmi-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/fmi-map.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/fmi-fwduni.c -o obj/src/match/fmi-fwduni.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/fmi-fwduni.o
 cc -c src/match/ft-front-generation.c -o obj/src/match/ft-front-generation.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/firstcodes-insert.c -o obj/src/match/firstcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/firstcodes-insert.o
 cc -c src/match/fmi-save.c -o obj/src/match/fmi-save.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/fmi-save.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/firstcodes-tab.c -o obj/src/match/firstcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/firstcodes-tab.o
 cc -c src/match/ft-front-prune.c -o obj/src/match/ft-front-prune.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
-test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/ft-polish.c -o obj/src/match/ft-polish.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/eis-blockcomp.c -o obj/src/match/eis-blockcomp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-blockcomp.o
+test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/ft-trimstat.c -o obj/src/match/ft-trimstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/firstcodes-insert.c -o obj/src/match/firstcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/firstcodes-insert.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/gfa_writer.c -o obj/src/match/gfa_writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/gfa_writer.c -o obj/src/match/gfa_writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/giextract.c -o obj/src/match/giextract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/firstcodes-scan.c -o obj/src/match/firstcodes-scan.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/firstcodes-scan.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/greedyedist.c -o obj/src/match/greedyedist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/firstcodes-tab.c -o obj/src/match/firstcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/firstcodes-tab.o
 cc -c src/match/greedyfwdmat.c -o obj/src/match/greedyfwdmat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/hashfirstcodes.c -o obj/src/match/hashfirstcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/ft-polish.c -o obj/src/match/ft-polish.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/ft-polish.o
-cc -c src/match/firstcodes-scan.c -o obj/src/match/firstcodes-scan.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/firstcodes-scan.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/hlk-version.c -o obj/src/match/hlk-version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/ft-polish.c -o obj/src/match/ft-polish.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/ft-polish.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/hplstore.c -o obj/src/match/hplstore.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/idx-limdfs.c -o obj/src/match/idx-limdfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/ft-trimstat.c -o obj/src/match/ft-trimstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/ft-trimstat.o
-cc -c src/match/greedyedist.c -o obj/src/match/greedyedist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/greedyedist.o
 cc -c src/match/gfa_writer.c -o obj/src/match/gfa_writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/gfa_writer.o
-cc -c src/match/hashfirstcodes.c -o obj/src/match/hashfirstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/hashfirstcodes.o
+test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/idx-limdfs.c -o obj/src/match/idx-limdfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/fmi-sufbwtstream.c -o obj/src/match/fmi-sufbwtstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/fmi-sufbwtstream.o
 cc -c src/match/hlk-version.c -o obj/src/match/hlk-version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/hlk-version.o
+cc -c src/match/greedyedist.c -o obj/src/match/greedyedist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/greedyedist.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/greedyfwdmat.c -o obj/src/match/greedyfwdmat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/greedyfwdmat.o
+cc -c src/match/hashfirstcodes.c -o obj/src/match/hashfirstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/hashfirstcodes.o
 cc -c src/match/idxlocali.c -o obj/src/match/idxlocali.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/fmi-sufbwtstream.c -o obj/src/match/fmi-sufbwtstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/fmi-sufbwtstream.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/idxlocalidp.c -o obj/src/match/idxlocalidp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/idxlocalisw.c -o obj/src/match/idxlocalisw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/greedyfwdmat.c -o obj/src/match/greedyfwdmat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/greedyfwdmat.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/idxlocalisw.c -o obj/src/match/idxlocalisw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/index_options.c -o obj/src/match/index_options.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/initbasepower.c -o obj/src/match/initbasepower.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/hplstore.c -o obj/src/match/hplstore.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/hplstore.o
-cc -c src/match/eis-blockcomp.c -o obj/src/match/eis-blockcomp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/eis-blockcomp.o
 cc -c src/match/firstcodes.c -o obj/src/match/firstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/firstcodes.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/initeqsvec.c -o obj/src/match/initeqsvec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/hplstore.c -o obj/src/match/hplstore.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/hplstore.o
 cc -c src/match/iter-window.c -o obj/src/match/iter-window.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/karlin_altschul_stat.c -o obj/src/match/karlin_altschul_stat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/initbasepower.c -o obj/src/match/initbasepower.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/initbasepower.o
+cc -c src/match/idxlocali.c -o obj/src/match/idxlocali.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/idxlocali.o
+cc -c src/match/initeqsvec.c -o obj/src/match/initeqsvec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/initeqsvec.o
+cc -c src/match/diagbandseed.c -o obj/src/match/diagbandseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/diagbandseed.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/giextract.c -o obj/src/match/giextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/giextract.o
 cc -c src/match/kmer2string.c -o obj/src/match/kmer2string.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/lua_tools.c -o obj/src/match/lua_tools.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/initeqsvec.c -o obj/src/match/initeqsvec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/initeqsvec.o
-cc -c src/match/idxlocali.c -o obj/src/match/idxlocali.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/idxlocali.o
-cc -c src/match/kmer2string.c -o obj/src/match/kmer2string.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/kmer2string.o
-cc -c src/match/lua_tools.c -o obj/src/match/lua_tools.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/lua_tools.o
-cc -c src/match/initbasepower.c -o obj/src/match/initbasepower.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/initbasepower.o
+cc -c src/match/ft-front-generation.c -o obj/src/match/ft-front-generation.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/ft-front-generation.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/marksubstring.c -o obj/src/match/marksubstring.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/idxlocalidp.c -o obj/src/match/idxlocalidp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/idxlocalidp.o
 cc -c src/match/iter-window.c -o obj/src/match/iter-window.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/iter-window.o
+cc -c src/match/kmer2string.c -o obj/src/match/kmer2string.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/kmer2string.o
+cc -c src/match/marksubstring.c -o obj/src/match/marksubstring.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/giextract.c -o obj/src/match/giextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/giextract.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/idxlocalidp.c -o obj/src/match/idxlocalidp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/idxlocalidp.o
 cc -c src/match/merger-trie.c -o obj/src/match/merger-trie.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/lua_tools.c -o obj/src/match/lua_tools.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/lua_tools.o
+cc -c src/match/idxlocalisw.c -o obj/src/match/idxlocalisw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/idxlocalisw.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/mssufpat.c -o obj/src/match/mssufpat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/ft-front-generation.c -o obj/src/match/ft-front-generation.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/ft-front-generation.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/index_options.c -o obj/src/match/index_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/index_options.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/myersapm.c -o obj/src/match/myersapm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/nullcols.c -o obj/src/match/nullcols.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/optionargmode.c -o obj/src/match/optionargmode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/marksubstring.c -o obj/src/match/marksubstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/marksubstring.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/pck-count-nodes.c -o obj/src/match/pck-count-nodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/idxlocalisw.c -o obj/src/match/idxlocalisw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/idxlocalisw.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/pck-count-nodes.c -o obj/src/match/pck-count-nodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/pckbucket.c -o obj/src/match/pckbucket.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/pckdfs.c -o obj/src/match/pckdfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/ft-eoplist.c -o obj/src/match/ft-eoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/ft-eoplist.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/ft-eoplist.c -o obj/src/match/ft-eoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/ft-eoplist.o
 cc -c src/match/prsqualint.c -o obj/src/match/prsqualint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/index_options.c -o obj/src/match/index_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/index_options.o
+cc -c src/match/marksubstring.c -o obj/src/match/marksubstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/marksubstring.o
+cc -c src/match/nullcols.c -o obj/src/match/nullcols.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/nullcols.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/pssm.c -o obj/src/match/pssm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/nullcols.c -o obj/src/match/nullcols.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/nullcols.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/querymatch-align.c -o obj/src/match/querymatch-align.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/mssufpat.c -o obj/src/match/mssufpat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/mssufpat.o
+cc -c src/match/myersapm.c -o obj/src/match/myersapm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/myersapm.o
+cc -c src/match/optionargmode.c -o obj/src/match/optionargmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/optionargmode.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/merger-trie.c -o obj/src/match/merger-trie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/merger-trie.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/myersapm.c -o obj/src/match/myersapm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/myersapm.o
-cc -c src/match/optionargmode.c -o obj/src/match/optionargmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/optionargmode.o
-cc -c src/match/pck-count-nodes.c -o obj/src/match/pck-count-nodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/pck-count-nodes.o
+cc -c src/match/merger-trie.c -o obj/src/match/merger-trie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/merger-trie.o
 cc -c src/match/prsqualint.c -o obj/src/match/prsqualint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/prsqualint.o
 cc -c src/match/querymatch.c -o obj/src/match/querymatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/radixsort_str.c -o obj/src/match/radixsort_str.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/pssm.c -o obj/src/match/pssm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/pssm.o
+cc -c src/match/pck-count-nodes.c -o obj/src/match/pck-count-nodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/pck-count-nodes.o
 cc -c src/match/pckdfs.c -o obj/src/match/pckdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/pckdfs.o
+test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/randomcodes-correct.c -o obj/src/match/randomcodes-correct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/diagbandseed.c -o obj/src/match/diagbandseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/diagbandseed.o
-cc -c src/match/pckbucket.c -o obj/src/match/pckbucket.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/pckbucket.o
+cc -c src/match/idx-limdfs.c -o obj/src/match/idx-limdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/idx-limdfs.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/pssm.c -o obj/src/match/pssm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/pssm.o
 cc -c src/match/randomcodes-find-seldom.c -o obj/src/match/randomcodes-find-seldom.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/randomcodes-hpcorrect.c -o obj/src/match/randomcodes-hpcorrect.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
@@ -3236,217 +3271,217 @@
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/randomcodes.c -o obj/src/match/randomcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/pckbucket.c -o obj/src/match/pckbucket.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/pckbucket.o
 cc -c src/match/rdj-cntlist.c -o obj/src/match/rdj-cntlist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/karlin_altschul_stat.c -o obj/src/match/karlin_altschul_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/karlin_altschul_stat.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/rdj-contfind-bottomup.c -o obj/src/match/rdj-contfind-bottomup.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/idx-limdfs.c -o obj/src/match/idx-limdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/idx-limdfs.o
 cc -c src/match/randomcodes-find-seldom.c -o obj/src/match/randomcodes-find-seldom.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/randomcodes-find-seldom.o
-cc -c src/match/karlin_altschul_stat.c -o obj/src/match/karlin_altschul_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/karlin_altschul_stat.o
+cc -c src/match/rdj-contfind-bottomup.c -o obj/src/match/rdj-contfind-bottomup.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/querymatch-align.c -o obj/src/match/querymatch-align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/querymatch-align.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/rdj-contfinder.c -o obj/src/match/rdj-contfinder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/querymatch-align.c -o obj/src/match/querymatch-align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/querymatch-align.o
 cc -c src/match/rdj-contigpaths.c -o obj/src/match/rdj-contigpaths.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/rdj-contigs-graph.c -o obj/src/match/rdj-contigs-graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/rdj-contigs-writer.c -o obj/src/match/rdj-contigs-writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/randomcodes-correct.c -o obj/src/match/randomcodes-correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/randomcodes-correct.o
+cc -c src/match/randomcodes-tab.c -o obj/src/match/randomcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/randomcodes-tab.o
 cc -c src/match/rdj-cntlist.c -o obj/src/match/rdj-cntlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-cntlist.o
+cc -c src/match/randomcodes-sfx-partssuf.c -o obj/src/match/randomcodes-sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/randomcodes-sfx-partssuf.o
+test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/querymatch-display.o
+cc -c src/match/rdj-contigs-writer.c -o obj/src/match/rdj-contigs-writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/rdj-errfind.c -o obj/src/match/rdj-errfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/randomcodes-tab.c -o obj/src/match/randomcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/randomcodes-tab.o
-cc -c src/match/rdj-contigpaths.c -o obj/src/match/rdj-contigpaths.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-contigpaths.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/randomcodes-sfx-partssuf.c -o obj/src/match/randomcodes-sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/randomcodes-sfx-partssuf.o
 cc -c src/match/rdj-ovlfind-bf.c -o obj/src/match/rdj-ovlfind-bf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/rdj-contigs-writer.c -o obj/src/match/rdj-contigs-writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-contigs-writer.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/rdj-contigpaths.c -o obj/src/match/rdj-contigpaths.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-contigpaths.o
 cc -c src/match/rdj-ovlfind-dp.c -o obj/src/match/rdj-ovlfind-dp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/randomcodes-insert.c -o obj/src/match/randomcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/randomcodes-insert.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/rdj-ovlfind-gusfield.c -o obj/src/match/rdj-ovlfind-gusfield.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/querymatch.c -o obj/src/match/querymatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/querymatch.o
 cc -c src/match/rdj-ovlfind-kmp.c -o obj/src/match/rdj-ovlfind-kmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/radixsort_str.c -o obj/src/match/radixsort_str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/radixsort_str.o
 cc -c src/match/rdj-pairwise.c -o obj/src/match/rdj-pairwise.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/querymatch-display.o
-cc -c src/match/randomcodes-insert.c -o obj/src/match/randomcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/randomcodes-insert.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/rdj-spmfind.c -o obj/src/match/rdj-spmfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/rdj-spmlist.c -o obj/src/match/rdj-spmlist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/radixsort_str.c -o obj/src/match/radixsort_str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/radixsort_str.o
-cc -c src/match/querymatch.c -o obj/src/match/querymatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/querymatch.o
+cc -c src/match/rdj-contigs-writer.c -o obj/src/match/rdj-contigs-writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-contigs-writer.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/ft-front-prune.c -o obj/src/match/ft-front-prune.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/ft-front-prune.o
 cc -c src/match/rdj-spmproc.c -o obj/src/match/rdj-spmproc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/rdj-strgraph.c -o obj/src/match/rdj-strgraph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/rdj-ovlfind-bf.c -o obj/src/match/rdj-ovlfind-bf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-ovlfind-bf.o
+cc -c src/match/randomcodes-hpcorrect.c -o obj/src/match/randomcodes-hpcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/randomcodes-hpcorrect.o
+cc -c src/match/rdj-errfind.c -o obj/src/match/rdj-errfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-errfind.o
+cc -c src/match/rdj-spmproc.c -o obj/src/match/rdj-spmproc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-spmproc.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/rdj-twobitenc-editor.c -o obj/src/match/rdj-twobitenc-editor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/rdj-contfind-bottomup.c -o obj/src/match/rdj-contfind-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-contfind-bottomup.o
-cc -c src/match/randomcodes-hpcorrect.c -o obj/src/match/randomcodes-hpcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/randomcodes-hpcorrect.o
+cc -c src/match/rdj-ovlfind-bf.c -o obj/src/match/rdj-ovlfind-bf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-ovlfind-bf.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/rdj-pairwise.c -o obj/src/match/rdj-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-pairwise.o
 cc -c src/match/rdj-version.c -o obj/src/match/rdj-version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/ft-front-prune.c -o obj/src/match/ft-front-prune.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/ft-front-prune.o
-cc -c src/match/rdj-errfind.c -o obj/src/match/rdj-errfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-errfind.o
 cc -c src/match/reads2twobit.c -o obj/src/match/reads2twobit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/rdj-spmproc.c -o obj/src/match/rdj-spmproc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-spmproc.o
-cc -c src/match/rdj-contigs-graph.c -o obj/src/match/rdj-contigs-graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-contigs-graph.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/rdj-ovlfind-gusfield.c -o obj/src/match/rdj-ovlfind-gusfield.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-ovlfind-gusfield.o
 cc -c src/match/reads_libraries_table.c -o obj/src/match/reads_libraries_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/rdj-contfind-bottomup.c -o obj/src/match/rdj-contfind-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-contfind-bottomup.o
+cc -c src/match/rdj-ovlfind-gusfield.c -o obj/src/match/rdj-ovlfind-gusfield.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-ovlfind-gusfield.o
 cc -c src/match/rdj-twobitenc-editor.c -o obj/src/match/rdj-twobitenc-editor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-twobitenc-editor.o
-cc -c src/match/rdj-version.c -o obj/src/match/rdj-version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-version.o
+cc -c src/match/rdj-ovlfind-kmp.c -o obj/src/match/rdj-ovlfind-kmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-ovlfind-kmp.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/rdj-ovlfind-dp.c -o obj/src/match/rdj-ovlfind-dp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-ovlfind-dp.o
 cc -c src/match/rectangle-store.c -o obj/src/match/rectangle-store.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/rdj-version.c -o obj/src/match/rdj-version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-version.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/revcompl.c -o obj/src/match/revcompl.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/rdj-ovlfind-dp.c -o obj/src/match/rdj-ovlfind-dp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-ovlfind-dp.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/seed-extend-iter.c -o obj/src/match/seed-extend-iter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/reads_libraries_table.c -o obj/src/match/reads_libraries_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/reads_libraries_table.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/seed-extend.c -o obj/src/match/seed-extend.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/rdj-pairwise.c -o obj/src/match/rdj-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-pairwise.o
 cc -c src/match/seed_extend_parts.c -o obj/src/match/seed_extend_parts.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/revcompl.c -o obj/src/match/revcompl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/revcompl.o
+cc -c src/match/rdj-contigs-graph.c -o obj/src/match/rdj-contigs-graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-contigs-graph.o
 cc -c src/match/seqabstract.c -o obj/src/match/seqabstract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/rectangle-store.c -o obj/src/match/rectangle-store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rectangle-store.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/revcompl.c -o obj/src/match/revcompl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/revcompl.o
 cc -c src/match/seqnumrelpos.c -o obj/src/match/seqnumrelpos.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/reads_libraries_table.c -o obj/src/match/reads_libraries_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/reads_libraries_table.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/rectangle-store.c -o obj/src/match/rectangle-store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rectangle-store.o
 cc -c src/match/sfx-apfxlen.c -o obj/src/match/sfx-apfxlen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/sfx-bentsedg.c -o obj/src/match/sfx-bentsedg.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/sfx-bltrie.c -o obj/src/match/sfx-bltrie.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/randomcodes.c -o obj/src/match/randomcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/randomcodes.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/sfx-copysort.c -o obj/src/match/sfx-copysort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/rdj-ovlfind-kmp.c -o obj/src/match/rdj-ovlfind-kmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-ovlfind-kmp.o
 cc -c src/match/seqnumrelpos.c -o obj/src/match/seqnumrelpos.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/seqnumrelpos.o
+cc -c src/match/sfx-apfxlen.c -o obj/src/match/sfx-apfxlen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-apfxlen.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/sfx-diffcov.c -o obj/src/match/sfx-diffcov.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/sfx-enumcodes.c -o obj/src/match/sfx-enumcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/seqabstract.c -o obj/src/match/seqabstract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/seqabstract.o
-cc -c src/match/seed-extend-iter.c -o obj/src/match/seed-extend-iter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/seed-extend-iter.o
-cc -c src/match/sfx-apfxlen.c -o obj/src/match/sfx-apfxlen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-apfxlen.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/sfx-lcpvalues.c -o obj/src/match/sfx-lcpvalues.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/seed_extend_parts.c -o obj/src/match/seed_extend_parts.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/seed_extend_parts.o
-test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/rdj-spmfind.c -o obj/src/match/rdj-spmfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-spmfind.o
+cc -c src/match/seed-extend-iter.c -o obj/src/match/seed-extend-iter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/seed-extend-iter.o
+cc -c src/match/seqabstract.c -o obj/src/match/seqabstract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/seqabstract.o
 cc -c src/match/rdj-spmlist.c -o obj/src/match/rdj-spmlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-spmlist.o
-cc -c src/match/sfx-linlcp.c -o obj/src/match/sfx-linlcp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/sfx-linlcp.c -o obj/src/match/sfx-linlcp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/seed_extend_parts.c -o obj/src/match/seed_extend_parts.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/seed_extend_parts.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/sfx-enumcodes.c -o obj/src/match/sfx-enumcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-enumcodes.o
 cc -c src/match/sfx-lwcheck.c -o obj/src/match/sfx-lwcheck.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/sfx-mappedstr.c -o obj/src/match/sfx-mappedstr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/rdj-contfinder.c -o obj/src/match/rdj-contfinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-contfinder.o
+cc -c src/match/sfx-enumcodes.c -o obj/src/match/sfx-enumcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-enumcodes.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/sfx-maprange.c -o obj/src/match/sfx-maprange.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/sfx-opt.c -o obj/src/match/sfx-opt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/seed-extend.c -o obj/src/match/seed-extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/seed-extend.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/sfx-outprj.c -o obj/src/match/sfx-outprj.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/rdj-spmfind.c -o obj/src/match/rdj-spmfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-spmfind.o
-cc -c src/match/sfx-lwcheck.c -o obj/src/match/sfx-lwcheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-lwcheck.o
-cc -c src/match/sfx-lcpvalues.c -o obj/src/match/sfx-lcpvalues.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-lcpvalues.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/randomcodes.c -o obj/src/match/randomcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/randomcodes.o
 cc -c src/match/sfx-partssuf.c -o obj/src/match/sfx-partssuf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/sfx-copysort.c -o obj/src/match/sfx-copysort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-copysort.o
+cc -c src/match/sfx-lwcheck.c -o obj/src/match/sfx-lwcheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-lwcheck.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/rdj-contfinder.c -o obj/src/match/rdj-contfinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-contfinder.o
-cc -c src/match/sfx-opt.c -o obj/src/match/sfx-opt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-opt.o
-cc -c src/match/sfx-radixsort.c -o obj/src/match/sfx-radixsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/sfx-radixsort.c -o obj/src/match/sfx-radixsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/sfx-run.c -o obj/src/match/sfx-run.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/sfx-opt.c -o obj/src/match/sfx-opt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-opt.o
+cc -c src/match/sfx-outprj.c -o obj/src/match/sfx-outprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-outprj.o
+cc -c src/match/seed-extend.c -o obj/src/match/seed-extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/seed-extend.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/sfx-sain.c -o obj/src/match/sfx-sain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/sfx-outprj.c -o obj/src/match/sfx-outprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-outprj.o
 cc -c src/match/sfx-shortreadsort.c -o obj/src/match/sfx-shortreadsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/sfx-suffixer.c -o obj/src/match/sfx-suffixer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/sfx-suffixgetset.c -o obj/src/match/sfx-suffixgetset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/sfx-linlcp.c -o obj/src/match/sfx-linlcp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-linlcp.o
+cc -c src/match/sfx-lcpvalues.c -o obj/src/match/sfx-lcpvalues.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-lcpvalues.o
 cc -c src/match/sfx-radixsort.c -o obj/src/match/sfx-radixsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-radixsort.o
-cc -c src/match/sfx-bltrie.c -o obj/src/match/sfx-bltrie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-bltrie.o
-cc -c src/match/sfx-copysort.c -o obj/src/match/sfx-copysort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-copysort.o
 cc -c src/match/sfx-mappedstr.c -o obj/src/match/sfx-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-mappedstr.o
-cc -c src/match/sfx-linlcp.c -o obj/src/match/sfx-linlcp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-linlcp.o
 test -d obj/src/match || mkdir -p obj/src/match
+test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/sfx-suffixgetset.c -o obj/src/match/sfx-suffixgetset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/sfx-suftaborder.c -o obj/src/match/sfx-suftaborder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/shu-dfs.c -o obj/src/match/shu-dfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/sfx-bltrie.c -o obj/src/match/sfx-bltrie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-bltrie.o
+cc -c src/match/sfx-maprange.c -o obj/src/match/sfx-maprange.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-maprange.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/shu-divergence.c -o obj/src/match/shu-divergence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/shu-encseq-gc.c -o obj/src/match/shu-encseq-gc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/sfx-partssuf.c -o obj/src/match/sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-partssuf.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/shu-genomediff.c -o obj/src/match/shu-genomediff.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/sfx-maprange.c -o obj/src/match/sfx-maprange.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-maprange.o
+cc -c src/match/sfx-suftaborder.c -o obj/src/match/sfx-suftaborder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-suftaborder.o
+cc -c src/match/sfx-run.c -o obj/src/match/sfx-run.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-run.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/sfx-partssuf.c -o obj/src/match/sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-partssuf.o
 cc -c src/match/shu_unitfile.c -o obj/src/match/shu_unitfile.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/spaced-seeds.c -o obj/src/match/spaced-seeds.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/shu-encseq-gc.c -o obj/src/match/shu-encseq-gc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/shu-encseq-gc.o
-cc -c src/match/sfx-suftaborder.c -o obj/src/match/sfx-suftaborder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-suftaborder.o
-cc -c src/match/shu-divergence.c -o obj/src/match/shu-divergence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/shu-divergence.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/specialrank.c -o obj/src/match/specialrank.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/sfx-bentsedg.c -o obj/src/match/sfx-bentsedg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-bentsedg.o
+cc -c src/match/shu-divergence.c -o obj/src/match/shu-divergence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/shu-divergence.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/sfx-run.c -o obj/src/match/sfx-run.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-run.o
 cc -c src/match/spmsuftab.c -o obj/src/match/spmsuftab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/shu_unitfile.c -o obj/src/match/shu_unitfile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/shu_unitfile.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/sfx-bentsedg.c -o obj/src/match/sfx-bentsedg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-bentsedg.o
+cc -c src/match/shu_unitfile.c -o obj/src/match/shu_unitfile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/shu_unitfile.o
+cc -c src/match/spaced-seeds.c -o obj/src/match/spaced-seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/spaced-seeds.o
 cc -c src/match/squarededist.c -o obj/src/match/squarededist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/substriter.c -o obj/src/match/substriter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/spaced-seeds.c -o obj/src/match/spaced-seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/spaced-seeds.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/tagerator.c -o obj/src/match/tagerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/spmsuftab.c -o obj/src/match/spmsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/spmsuftab.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/test-mappedstr.c -o obj/src/match/test-mappedstr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/shu-genomediff.c -o obj/src/match/shu-genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/shu-genomediff.o
-cc -c src/match/spmsuftab.c -o obj/src/match/spmsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/spmsuftab.o
+cc -c src/match/specialrank.c -o obj/src/match/specialrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/specialrank.o
+cc -c src/match/sfx-suffixgetset.c -o obj/src/match/sfx-suffixgetset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-suffixgetset.o
+cc -c src/match/squarededist.c -o obj/src/match/squarededist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/squarededist.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/test-maxpairs.c -o obj/src/match/test-maxpairs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/squarededist.c -o obj/src/match/squarededist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/squarededist.o
+cc -c src/match/sfx-shortreadsort.c -o obj/src/match/sfx-shortreadsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-shortreadsort.o
+cc -c src/match/shu-dfs.c -o obj/src/match/shu-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/shu-dfs.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/specialrank.c -o obj/src/match/specialrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/specialrank.o
+cc -c src/match/substriter.c -o obj/src/match/substriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/substriter.o
 cc -c src/match/test-mergeesa.c -o obj/src/match/test-mergeesa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/substriter.c -o obj/src/match/substriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/substriter.o
 cc -c src/match/test-mtrieins.c -o obj/src/match/test-mtrieins.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/sfx-suffixgetset.c -o obj/src/match/sfx-suffixgetset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-suffixgetset.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/test-pairwise.c -o obj/src/match/test-pairwise.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/shu-genomediff.c -o obj/src/match/shu-genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/shu-genomediff.o
 test -d obj/src/match || mkdir -p obj/src/match
-cc -c src/match/turnwheels.c -o obj/src/match/turnwheels.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/test-mappedstr.c -o obj/src/match/test-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/test-mappedstr.o
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/turnwheels.c -o obj/src/match/turnwheels.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/twobits2kmers.c -o obj/src/match/twobits2kmers.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
+cc -c src/match/test-mappedstr.c -o obj/src/match/test-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/test-mappedstr.o
 cc -c src/match/tyr-map.c -o obj/src/match/tyr-map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/shu-dfs.c -o obj/src/match/shu-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/shu-dfs.o
+cc -c src/match/test-mtrieins.c -o obj/src/match/test-mtrieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/test-mtrieins.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/tyr-mersplit.c -o obj/src/match/tyr-mersplit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/sfx-shortreadsort.c -o obj/src/match/sfx-shortreadsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-shortreadsort.o
-cc -c src/match/test-mtrieins.c -o obj/src/match/test-mtrieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/test-mtrieins.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/tyr-mkindex.c -o obj/src/match/tyr-mkindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/test-pairwise.c -o obj/src/match/test-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/test-pairwise.o
 cc -c src/match/turnwheels.c -o obj/src/match/turnwheels.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/turnwheels.o
+cc -c src/match/test-maxpairs.c -o obj/src/match/test-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/test-maxpairs.o
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/test-mergeesa.c -o obj/src/match/test-mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/test-mergeesa.o
-cc -c src/match/test-pairwise.c -o obj/src/match/test-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/test-pairwise.o
-cc -c src/match/test-maxpairs.c -o obj/src/match/test-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/test-maxpairs.o
 cc -c src/match/tyr-occratio.c -o obj/src/match/tyr-occratio.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/match || mkdir -p obj/src/match
 cc -c src/match/tyr-search.c -o obj/src/match/tyr-search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
@@ -3455,69 +3490,70 @@
 test -d obj/src/gth || mkdir -p obj/src/gth
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/ags.c -o obj/src/gth/ags.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/tagerator.c -o obj/src/match/tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/tagerator.o
 cc -c src/gth/ags_build.c -o obj/src/gth/ags_build.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/twobits2kmers.c -o obj/src/match/twobits2kmers.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/twobits2kmers.o
+cc -c src/match/tyr-map.c -o obj/src/match/tyr-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/tyr-map.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/align_dna.c -o obj/src/gth/align_dna.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/tyr-map.c -o obj/src/match/tyr-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/tyr-map.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/align_protein.c -o obj/src/gth/align_protein.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/tagerator.c -o obj/src/match/tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/tagerator.o
 cc -c src/match/tyr-occratio.c -o obj/src/match/tyr-occratio.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/tyr-occratio.o
+cc -c src/match/tyr-search.c -o obj/src/match/tyr-search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/tyr-search.o
+cc -c src/gth/ags.c -o obj/src/gth/ags.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/ags.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/backtrace_path.c -o obj/src/gth/backtrace_path.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/bssm_helper.c -o obj/src/gth/bssm_helper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/ags.c -o obj/src/gth/ags.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/ags.o
+cc -c src/match/tyr-mersplit.c -o obj/src/match/tyr-mersplit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/tyr-mersplit.o
+cc -c src/match/tyr-mkindex.c -o obj/src/match/tyr-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/tyr-mkindex.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/bssm_param.c -o obj/src/gth/bssm_param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/tyr-search.c -o obj/src/match/tyr-search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/tyr-search.o
-cc -c src/gth/bssm_helper.c -o obj/src/gth/bssm_helper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/bssm_helper.o
 cc -c src/gth/ags_build.c -o obj/src/gth/ags_build.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/ags_build.o
-cc -c src/match/tyr-mkindex.c -o obj/src/match/tyr-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/tyr-mkindex.o
+cc -c src/gth/bssm_helper.c -o obj/src/gth/bssm_helper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/bssm_helper.o
 test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/match/sfx-diffcov.c -o obj/src/match/sfx-diffcov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-diffcov.o
 cc -c src/gth/bssm_param_rmsd.c -o obj/src/gth/bssm_param_rmsd.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/bssm_seq_processor.c -o obj/src/gth/bssm_seq_processor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/bssm_seq_processor.c -o obj/src/gth/bssm_seq_processor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gth/bssm_train_stream.c -o obj/src/gth/bssm_train_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/match/tyr-mersplit.c -o obj/src/match/tyr-mersplit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/tyr-mersplit.o
 cc -c src/gth/bssm_train_visitor.c -o obj/src/gth/bssm_train_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/call_info.c -o obj/src/gth/call_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/chain_collection.c -o obj/src/gth/chain_collection.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gth/bssm_train_stream.c -o obj/src/gth/bssm_train_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/bssm_train_stream.o
-cc -c src/gth/call_info.c -o obj/src/gth/call_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/call_info.o
-cc -c src/gth/bssm_param_rmsd.c -o obj/src/gth/bssm_param_rmsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/bssm_param_rmsd.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/chaining.c -o obj/src/gth/chaining.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/bssm_param_rmsd.c -o obj/src/gth/bssm_param_rmsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/bssm_param_rmsd.o
+cc -c src/match/reads2twobit.c -o obj/src/match/reads2twobit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/reads2twobit.o
+cc -c src/gth/call_info.c -o obj/src/gth/call_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/call_info.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/compute_scores.c -o obj/src/gth/compute_scores.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/match/xdrop.c -o obj/src/match/xdrop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/xdrop.o
-cc -c src/gth/chain_collection.c -o obj/src/gth/chain_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/chain_collection.o
 test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/chain_collection.c -o obj/src/gth/chain_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/chain_collection.o
 cc -c src/gth/desc_cache.c -o obj/src/gth/desc_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/match/rdj-strgraph.c -o obj/src/match/rdj-strgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-strgraph.o
+cc -c src/gth/bssm_train_visitor.c -o obj/src/gth/bssm_train_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/bssm_train_visitor.o
 cc -c src/gth/dp_options_core.c -o obj/src/gth/dp_options_core.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/sfx-diffcov.c -o obj/src/match/sfx-diffcov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-diffcov.o
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/bssm_train_visitor.c -o obj/src/gth/bssm_train_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/bssm_train_visitor.o
 cc -c src/gth/dp_options_est.c -o obj/src/gth/dp_options_est.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/dp_options_core.c -o obj/src/gth/dp_options_core.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/dp_options_core.o
-cc -c src/gth/desc_cache.c -o obj/src/gth/desc_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/desc_cache.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/dp_options_postpro.c -o obj/src/gth/dp_options_postpro.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/desc_cache.c -o obj/src/gth/desc_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/desc_cache.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/dp_param.c -o obj/src/gth/dp_param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/dp_scores_protein.c -o obj/src/gth/dp_scores_protein.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/dp_options_core.c -o obj/src/gth/dp_options_core.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/dp_options_core.o
+test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/dp_options_est.c -o obj/src/gth/dp_options_est.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/dp_options_est.o
+cc -c src/gth/dp_scores_protein.c -o obj/src/gth/dp_scores_protein.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/dp_options_postpro.c -o obj/src/gth/dp_options_postpro.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/dp_options_postpro.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/editoperation.c -o obj/src/gth/editoperation.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/dp_options_postpro.c -o obj/src/gth/dp_options_postpro.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/dp_options_postpro.o
-cc -c src/match/rdj-strgraph.c -o obj/src/match/rdj-strgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/rdj-strgraph.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gff3_pgl_visitor.c -o obj/src/gth/gff3_pgl_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
@@ -3525,199 +3561,203 @@
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gt_gth.c -o obj/src/gth/gt_gth.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gth/dp_scores_protein.c -o obj/src/gth/dp_scores_protein.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/dp_scores_protein.o
-test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/gt_gthbssmbuild.c -o obj/src/gth/gt_gthbssmbuild.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/match/sfx-suffixer.c -o obj/src/match/sfx-suffixer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-suffixer.o
 cc -c src/gth/chaining.c -o obj/src/gth/chaining.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/chaining.o
 cc -c src/gth/compute_scores.c -o obj/src/gth/compute_scores.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/compute_scores.o
-cc -c src/gth/gff3_pgl_visitor.c -o obj/src/gth/gff3_pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gff3_pgl_visitor.o
-cc -c src/gth/gff3_sa_visitor.c -o obj/src/gth/gff3_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gff3_sa_visitor.o
+test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/backtrace_path.c -o obj/src/gth/backtrace_path.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/backtrace_path.o
 cc -c src/gth/gt_gth.c -o obj/src/gth/gt_gth.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gth.o
+cc -c src/gth/gt_gthbssmbuild.c -o obj/src/gth/gt_gthbssmbuild.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/align_dna.c -o obj/src/gth/align_dna.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/align_dna.o
 cc -c src/gth/gt_gthbssmfileinfo.c -o obj/src/gth/gt_gthbssmfileinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/gff3_pgl_visitor.c -o obj/src/gth/gff3_pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gff3_pgl_visitor.o
+cc -c src/gth/editoperation.c -o obj/src/gth/editoperation.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/editoperation.o
 test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/align_dna.c -o obj/src/gth/align_dna.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/align_dna.o
+cc -c src/gth/gff3_sa_visitor.c -o obj/src/gth/gff3_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gff3_sa_visitor.o
 cc -c src/gth/gt_gthbssmprint.c -o obj/src/gth/gt_gthbssmprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/editoperation.c -o obj/src/gth/editoperation.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/editoperation.o
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/gt_gthbssmrmsd.c -o obj/src/gth/gt_gthbssmrmsd.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/gt_gthbssmbuild.c -o obj/src/gth/gt_gthbssmbuild.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gthbssmbuild.o
-cc -c src/gth/backtrace_path.c -o obj/src/gth/backtrace_path.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/backtrace_path.o
 test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/gt_gthbssmrmsd.c -o obj/src/gth/gt_gthbssmrmsd.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gth/gt_gthbssmtrain.c -o obj/src/gth/gt_gthbssmtrain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gt_gthconsensus.c -o obj/src/gth/gt_gthconsensus.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/reads2twobit.c -o obj/src/match/reads2twobit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/reads2twobit.o
-cc -c src/gth/gt_gthbssmprint.c -o obj/src/gth/gt_gthbssmprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gthbssmprint.o
-test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/gt_gthbssmrmsd.c -o obj/src/gth/gt_gthbssmrmsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gthbssmrmsd.o
 cc -c src/gth/gt_gthbssmfileinfo.c -o obj/src/gth/gt_gthbssmfileinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gthbssmfileinfo.o
-cc -c src/gth/dp_param.c -o obj/src/gth/dp_param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/dp_param.o
-cc -c src/gth/gt_gthfilestat.c -o obj/src/gth/gt_gthfilestat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/gt_gthfilestat.c -o obj/src/gth/gt_gthfilestat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/gt_gthbssmbuild.c -o obj/src/gth/gt_gthbssmbuild.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gthbssmbuild.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gt_gthmkbssmfiles.c -o obj/src/gth/gt_gthmkbssmfiles.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/sfx-suffixer.c -o obj/src/match/sfx-suffixer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-suffixer.o
+test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gt_gthsplit.c -o obj/src/gth/gt_gthsplit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/gt_gthbssmtrain.c -o obj/src/gth/gt_gthbssmtrain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gthbssmtrain.o
+cc -c src/match/sfx-sain.c -o obj/src/match/sfx-sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-sain.o
+cc -c src/gth/dp_param.c -o obj/src/gth/dp_param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/dp_param.o
+cc -c src/gth/gt_gthbssmprint.c -o obj/src/gth/gt_gthbssmprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gthbssmprint.o
+cc -c src/gth/gt_gthbssmrmsd.c -o obj/src/gth/gt_gthbssmrmsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gthbssmrmsd.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gthalignment.c -o obj/src/gth/gthalignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/gthchain.c -o obj/src/gth/gthchain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/align_protein.c -o obj/src/gth/align_protein.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/align_protein.o
-cc -c src/gth/gt_gthmkbssmfiles.c -o obj/src/gth/gt_gthmkbssmfiles.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gthmkbssmfiles.o
 test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/gthchain.c -o obj/src/gth/gthchain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gth/gthcluster.c -o obj/src/gth/gthcluster.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/match/sfx-sain.c -o obj/src/match/sfx-sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/match/sfx-sain.o
 cc -c src/gth/gt_gthconsensus.c -o obj/src/gth/gt_gthconsensus.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gthconsensus.o
+cc -c src/gth/gt_gthmkbssmfiles.c -o obj/src/gth/gt_gthmkbssmfiles.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gthmkbssmfiles.o
 test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/align_protein.c -o obj/src/gth/align_protein.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/align_protein.o
+cc -c src/gth/gt_gthfilestat.c -o obj/src/gth/gt_gthfilestat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gthfilestat.o
 cc -c src/gth/gthcutoffsminimal.c -o obj/src/gth/gthcutoffsminimal.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/gt_gthbssmtrain.c -o obj/src/gth/gt_gthbssmtrain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gthbssmtrain.o
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/gt_gthfilestat.c -o obj/src/gth/gt_gthfilestat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gthfilestat.o
-cc -c src/gth/gthcutoffsrelaxed.c -o obj/src/gth/gthcutoffsrelaxed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/gthcutoffsrelaxed.c -o obj/src/gth/gthcutoffsrelaxed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gth/gthcutoffsstrict.c -o obj/src/gth/gthcutoffsstrict.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/gthcutoffsminimal.c -o obj/src/gth/gthcutoffsminimal.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthcutoffsminimal.o
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/gthcluster.c -o obj/src/gth/gthcluster.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthcluster.o
 cc -c src/gth/gthmatch.c -o obj/src/gth/gthmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/bssm_seq_processor.c -o obj/src/gth/bssm_seq_processor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/bssm_seq_processor.o
 cc -c src/gth/gthorf.c -o obj/src/gth/gthorf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
+test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gthoutput.c -o obj/src/gth/gthoutput.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gth/gthmatch.c -o obj/src/gth/gthmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthmatch.o
-test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gthsadistri.c -o obj/src/gth/gthsadistri.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/gthcutoffsrelaxed.c -o obj/src/gth/gthcutoffsrelaxed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthcutoffsrelaxed.o
+cc -c src/gth/gthcluster.c -o obj/src/gth/gthcluster.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthcluster.o
+cc -c src/gth/gthcutoffsminimal.c -o obj/src/gth/gthcutoffsminimal.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthcutoffsminimal.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gthsortags.c -o obj/src/gth/gthsortags.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/gthcutoffsrelaxed.c -o obj/src/gth/gthcutoffsrelaxed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthcutoffsrelaxed.o
 test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/bssm_seq_processor.c -o obj/src/gth/bssm_seq_processor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/bssm_seq_processor.o
 cc -c src/gth/gthsplicesitescr.c -o obj/src/gth/gthsplicesitescr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gt_gthsplit.c -o obj/src/gth/gt_gthsplit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gt_gthsplit.o
 cc -c src/gth/gthoutput.c -o obj/src/gth/gthoutput.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthoutput.o
-test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gthtrans.c -o obj/src/gth/gthtrans.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/gthcutoffsstrict.c -o obj/src/gth/gthcutoffsstrict.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthcutoffsstrict.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gthtravalign.c -o obj/src/gth/gthtravalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/gthcutoffsstrict.c -o obj/src/gth/gthcutoffsstrict.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthcutoffsstrict.o
+cc -c src/gth/gthsadistri.c -o obj/src/gth/gthsadistri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthsadistri.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gthverbosefunc.c -o obj/src/gth/gthverbosefunc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/gthsadistri.c -o obj/src/gth/gthsadistri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthsadistri.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gthverbosefuncvm.c -o obj/src/gth/gthverbosefuncvm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gthxml.c -o obj/src/gth/gthxml.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/gthsortags.c -o obj/src/gth/gthsortags.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthsortags.o
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/gthverbosefunc.c -o obj/src/gth/gthverbosefunc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthverbosefunc.o
+test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/indent.c -o obj/src/gth/indent.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/input.c -o obj/src/gth/input.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/gthsortags.c -o obj/src/gth/gthsortags.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthsortags.o
+cc -c src/gth/gthverbosefunc.c -o obj/src/gth/gthverbosefunc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthverbosefunc.o
+cc -c src/gth/gthverbosefuncvm.c -o obj/src/gth/gthverbosefuncvm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthverbosefuncvm.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gthsplicesitescr.c -o obj/src/gth/gthsplicesitescr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthsplicesitescr.o
-cc -c src/gth/gthverbosefuncvm.c -o obj/src/gth/gthverbosefuncvm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthverbosefuncvm.o
-cc -c src/gth/gthxml.c -o obj/src/gth/gthxml.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthxml.o
-cc -c src/gth/input.c -o obj/src/gth/input.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/intermediate.c -o obj/src/gth/intermediate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gth/gthorf.c -o obj/src/gth/gthorf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthorf.o
+cc -c src/gth/gthxml.c -o obj/src/gth/gthxml.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthxml.o
 cc -c src/gth/indent.c -o obj/src/gth/indent.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/indent.o
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/intermediate.c -o obj/src/gth/intermediate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/gthchain.c -o obj/src/gth/gthchain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthchain.o
-test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/md5_cache.c -o obj/src/gth/md5_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/gthtravalign.c -o obj/src/gth/gthtravalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthtravalign.o
 cc -c src/gth/parse_options.c -o obj/src/gth/parse_options.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/path_matrix.c -o obj/src/gth/path_matrix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
-test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/path_walker.c -o obj/src/gth/path_walker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/pgl.c -o obj/src/gth/pgl.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/gthchain.c -o obj/src/gth/gthchain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthchain.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/pgl_collection.c -o obj/src/gth/pgl_collection.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/md5_cache.c -o obj/src/gth/md5_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/md5_cache.o
+cc -c src/gth/gthtravalign.c -o obj/src/gth/gthtravalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthtravalign.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/pgl_visitor.c -o obj/src/gth/pgl_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/md5_cache.c -o obj/src/gth/md5_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/md5_cache.o
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/proc_sa_collection.c -o obj/src/gth/proc_sa_collection.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/proc_sa_collection.c -o obj/src/gth/proc_sa_collection.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gth/region_factory.c -o obj/src/gth/region_factory.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/path_matrix.c -o obj/src/gth/path_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/path_matrix.o
 cc -c src/gth/run_header.c -o obj/src/gth/run_header.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/gthtrans.c -o obj/src/gth/gthtrans.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthtrans.o
 cc -c src/gth/sa.c -o obj/src/gth/sa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/path_walker.c -o obj/src/gth/path_walker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/path_walker.o
+cc -c src/gth/path_matrix.c -o obj/src/gth/path_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/path_matrix.o
+cc -c src/gth/pgl_visitor.c -o obj/src/gth/pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/pgl_visitor.o
+cc -c src/gth/pgl.c -o obj/src/gth/pgl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/pgl.o
+cc -c src/gth/pgl_collection.c -o obj/src/gth/pgl_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/pgl_collection.o
+cc -c src/gth/proc_sa_collection.c -o obj/src/gth/proc_sa_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/proc_sa_collection.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/sa_cmp.c -o obj/src/gth/sa_cmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/sa_collection.c -o obj/src/gth/sa_collection.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/pgl_visitor.c -o obj/src/gth/pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/pgl_visitor.o
 cc -c src/gth/sa_filter.c -o obj/src/gth/sa_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/proc_sa_collection.c -o obj/src/gth/proc_sa_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/proc_sa_collection.o
-cc -c src/gth/pgl.c -o obj/src/gth/pgl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/pgl.o
-cc -c src/gth/path_walker.c -o obj/src/gth/path_walker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/path_walker.o
-cc -c src/gth/run_header.c -o obj/src/gth/run_header.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/run_header.o
-cc -c src/gth/sa_cmp.c -o obj/src/gth/sa_cmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/sa_cmp.o
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/pgl_collection.c -o obj/src/gth/pgl_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/pgl_collection.o
 cc -c src/gth/sa_visitor.c -o obj/src/gth/sa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/run_header.c -o obj/src/gth/run_header.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/run_header.o
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/seq_con.c -o obj/src/gth/seq_con.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/similarity_filter.c -o obj/src/gth/similarity_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/sa_filter.c -o obj/src/gth/sa_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/sa_filter.o
+test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/intermediate.c -o obj/src/gth/intermediate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/intermediate.o
+cc -c src/gth/sa_cmp.c -o obj/src/gth/sa_cmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/sa_cmp.o
+cc -c src/gth/similarity_filter.c -o obj/src/gth/similarity_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gth/splice_site_model.c -o obj/src/gth/splice_site_model.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
+test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/spliced_seq.c -o obj/src/gth/spliced_seq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/intermediate.c -o obj/src/gth/intermediate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/intermediate.o
+cc -c src/gth/stat.c -o obj/src/gth/stat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/region_factory.c -o obj/src/gth/region_factory.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/region_factory.o
+cc -c src/gth/sa_filter.c -o obj/src/gth/sa_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/sa_filter.o
 cc -c src/gth/sa_visitor.c -o obj/src/gth/sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/sa_visitor.o
-cc -c src/gth/stat.c -o obj/src/gth/stat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/gth || mkdir -p obj/src/gth
-test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/time.c -o obj/src/gth/time.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/txt_pgl_visitor.c -o obj/src/gth/txt_pgl_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/gth || mkdir -p obj/src/gth
 cc -c src/gth/txt_sa_visitor.c -o obj/src/gth/txt_sa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/splice_site_model.c -o obj/src/gth/splice_site_model.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/splice_site_model.o
 test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/splice_site_model.c -o obj/src/gth/splice_site_model.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/splice_site_model.o
 cc -c src/gth/xml_final_sa_visitor.c -o obj/src/gth/xml_final_sa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gth/seq_con.c -o obj/src/gth/seq_con.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/seq_con.o
 test -d obj/src/gth || mkdir -p obj/src/gth
-cc -c src/gth/time.c -o obj/src/gth/time.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/time.o
-cc -c src/gth/gthalignment.c -o obj/src/gth/gthalignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthalignment.o
-cc -c src/gth/spliced_seq.c -o obj/src/gth/spliced_seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/spliced_seq.o
 cc -c src/gth/xml_inter_sa_visitor.c -o obj/src/gth/xml_inter_sa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/sa_collection.c -o obj/src/gth/sa_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/sa_collection.o
+cc -c src/gth/time.c -o obj/src/gth/time.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/time.o
 test -d obj/src/gth || mkdir -p obj/src/gth
+cc -c src/gth/sa_collection.c -o obj/src/gth/sa_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/sa_collection.o
+cc -c src/gth/input.c -o obj/src/gth/input.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/input.o
+cc -c src/gth/spliced_seq.c -o obj/src/gth/spliced_seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/spliced_seq.o
 cc -c src/gth/xml_pgl_visitor.c -o obj/src/gth/xml_pgl_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/gthalignment.c -o obj/src/gth/gthalignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/gthalignment.o
 test -d obj/src/ltr || mkdir -p obj/src/ltr
-cc -c src/ltr/gt_ltrclustering.c -o obj/src/ltr/gt_ltrclustering.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/ltr || mkdir -p obj/src/ltr
+cc -c src/gth/txt_sa_visitor.c -o obj/src/gth/txt_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/txt_sa_visitor.o
+cc -c src/ltr/gt_ltrclustering.c -o obj/src/ltr/gt_ltrclustering.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/ltr/gt_ltrdigest.c -o obj/src/ltr/gt_ltrdigest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/stat.c -o obj/src/gth/stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/stat.o
+cc -c src/gth/txt_pgl_visitor.c -o obj/src/gth/txt_pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/txt_pgl_visitor.o
 test -d obj/src/ltr || mkdir -p obj/src/ltr
 cc -c src/ltr/gt_ltrharvest.c -o obj/src/ltr/gt_ltrharvest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/parse_options.c -o obj/src/gth/parse_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/parse_options.o
 test -d obj/src/ltr || mkdir -p obj/src/ltr
-cc -c src/ltr/ltr_classify_stream.c -o obj/src/ltr/ltr_classify_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/ltr || mkdir -p obj/src/ltr
+cc -c src/ltr/ltr_classify_stream.c -o obj/src/ltr/ltr_classify_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/ltr/ltr_cluster_prepare_seq_visitor.c -o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/input.c -o obj/src/gth/input.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/input.o
-cc -c src/gth/parse_options.c -o obj/src/gth/parse_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/parse_options.o
-cc -c src/gth/txt_sa_visitor.c -o obj/src/gth/txt_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/txt_sa_visitor.o
-cc -c src/gth/xml_inter_sa_visitor.c -o obj/src/gth/xml_inter_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/xml_inter_sa_visitor.o
-cc -c src/gth/txt_pgl_visitor.c -o obj/src/gth/txt_pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/txt_pgl_visitor.o
 test -d obj/src/ltr || mkdir -p obj/src/ltr
+cc -c src/gth/xml_inter_sa_visitor.c -o obj/src/gth/xml_inter_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/xml_inter_sa_visitor.o
 cc -c src/ltr/ltr_cluster_stream.c -o obj/src/ltr/ltr_cluster_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/ltr || mkdir -p obj/src/ltr
 cc -c src/ltr/ltr_four_char_motif.c -o obj/src/ltr/ltr_four_char_motif.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/stat.c -o obj/src/gth/stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/stat.o
-cc -c src/gth/xml_pgl_visitor.c -o obj/src/gth/xml_pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/xml_pgl_visitor.o
-cc -c src/ltr/gt_ltrclustering.c -o obj/src/ltr/gt_ltrclustering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/gt_ltrclustering.o
 test -d obj/src/ltr || mkdir -p obj/src/ltr
 cc -c src/ltr/ltr_input_check_visitor.c -o obj/src/ltr/ltr_input_check_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/ltr/gt_ltrclustering.c -o obj/src/ltr/gt_ltrclustering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/gt_ltrclustering.o
+test -d obj/src/ltr || mkdir -p obj/src/ltr
+cc -c src/ltr/ltr_orf_annotator_stream.c -o obj/src/ltr/ltr_orf_annotator_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/xml_final_sa_visitor.c -o obj/src/gth/xml_final_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/xml_final_sa_visitor.o
+test -d obj/src/ltr || mkdir -p obj/src/ltr
+cc -c src/ltr/ltr_refseq_match_stream.c -o obj/src/ltr/ltr_refseq_match_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/gth/xml_pgl_visitor.c -o obj/src/gth/xml_pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/xml_pgl_visitor.o
 src/ltr/ltr_cluster_prepare_seq_visitor.c: In function 'gt_ltr_cluster_prepare_seq_visitor_feature_node':
 src/ltr/ltr_cluster_prepare_seq_visitor.c:146:39: warning: '%lu' directive output may be truncated writing between 1 and 20 bytes into a region of size between 0 and 8191 [-Wformat-truncation=]
        (void) snprintf(header, BUFSIZ, "%s_"GT_WU"_"GT_WU"", buffer, range.start,
@@ -3760,16 +3800,10 @@
         __bos (__s), __fmt, __va_arg_pack ());
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 test -d obj/src/ltr || mkdir -p obj/src/ltr
-cc -c src/gth/xml_final_sa_visitor.c -o obj/src/gth/xml_final_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/xml_final_sa_visitor.o
-cc -c src/gth/similarity_filter.c -o obj/src/gth/similarity_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/similarity_filter.o
-cc -c src/ltr/ltr_orf_annotator_stream.c -o obj/src/ltr/ltr_orf_annotator_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/ltr/ltr_four_char_motif.c -o obj/src/ltr/ltr_four_char_motif.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltr_four_char_motif.o
 test -d obj/src/ltr || mkdir -p obj/src/ltr
-cc -c src/ltr/ltr_refseq_match_stream.c -o obj/src/ltr/ltr_refseq_match_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/ltr/ltr_cluster_prepare_seq_visitor.c -o obj/src/ltr/ltr_cluster_prepare_seq_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltr_cluster_prepare_seq_visitor.o
-cc -c src/ltr/gt_ltrharvest.c -o obj/src/ltr/gt_ltrharvest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/gt_ltrharvest.o
-test -d obj/src/ltr || mkdir -p obj/src/ltr
-cc -c src/ltr/gt_ltrdigest.c -o obj/src/ltr/gt_ltrdigest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/gt_ltrdigest.o
+cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 src/ltr/ltr_cluster_stream.c: In function 'process_feature':
 src/ltr/ltr_cluster_stream.c:352:41: warning: '%lu' directive output may be truncated writing between 1 and 20 bytes into a region of size between 0 and 8191 [-Wformat-truncation=]
          (void) snprintf(header, BUFSIZ, "%s_"GT_WU"_"GT_WU"", buffer,
@@ -3791,7 +3825,6 @@
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         __bos (__s), __fmt, __va_arg_pack ());
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 src/ltr/ltr_cluster_stream.c:344:41: warning: '%lu' directive output may be truncated writing between 1 and 20 bytes into a region of size between 0 and 8191 [-Wformat-truncation=]
          (void) snprintf(header, BUFSIZ, "%s_"GT_WU"_"GT_WU"", buffer,
                                          ^~~~~
@@ -3812,40 +3845,46 @@
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         __bos (__s), __fmt, __va_arg_pack ());
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-cc -c src/ltr/ltr_input_check_visitor.c -o obj/src/ltr/ltr_input_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltr_input_check_visitor.o
 cc -c src/ltr/ltr_orf_annotator_stream.c -o obj/src/ltr/ltr_orf_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltr_orf_annotator_stream.o
 test -d obj/src/ltr || mkdir -p obj/src/ltr
-cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/ltr || mkdir -p obj/src/ltr
 cc -c src/ltr/ltrdigest_pdom_visitor.c -o obj/src/ltr/ltrdigest_pdom_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/ltr || mkdir -p obj/src/ltr
 cc -c src/ltr/ltrdigest_ppt_visitor.c -o obj/src/ltr/ltrdigest_ppt_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/ltr/ltr_cluster_prepare_seq_visitor.c -o obj/src/ltr/ltr_cluster_prepare_seq_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltr_cluster_prepare_seq_visitor.o
+cc -c src/ltr/ltr_input_check_visitor.c -o obj/src/ltr/ltr_input_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltr_input_check_visitor.o
+cc -c src/gth/similarity_filter.c -o obj/src/gth/similarity_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/similarity_filter.o
+cc -c src/ltr/gt_ltrharvest.c -o obj/src/ltr/gt_ltrharvest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/gt_ltrharvest.o
 test -d obj/src/ltr || mkdir -p obj/src/ltr
 cc -c src/ltr/ltrdigest_strand_assign_visitor.c -o obj/src/ltr/ltrdigest_strand_assign_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/ltr || mkdir -p obj/src/ltr
+cc -c src/ltr/ltr_classify_stream.c -o obj/src/ltr/ltr_classify_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltr_classify_stream.o
 cc -c src/ltr/ltrharvest_fasta_out_stream.c -o obj/src/ltr/ltrharvest_fasta_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/ltr/gt_ltrdigest.c -o obj/src/ltr/gt_ltrdigest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/gt_ltrdigest.o
 test -d obj/src/ltr || mkdir -p obj/src/ltr
 cc -c src/ltr/ltrharvest_fasta_out_visitor.c -o obj/src/ltr/ltrharvest_fasta_out_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/ltr/ltr_classify_stream.c -o obj/src/ltr/ltr_classify_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltr_classify_stream.o
 test -d obj/src/ltr || mkdir -p obj/src/ltr
-cc -c src/ltr/ltrharvest_stream.c -o obj/src/ltr/ltrharvest_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/ltr || mkdir -p obj/src/ltr
+cc -c src/gth/bssm_param.c -o obj/src/gth/bssm_param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/bssm_param.o
+cc -c src/ltr/ltr_cluster_stream.c -o obj/src/ltr/ltr_cluster_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltr_cluster_stream.o
+cc -c src/ltr/ltrharvest_stream.c -o obj/src/ltr/ltrharvest_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/ltr/ltrharvest_tabout_stream.c -o obj/src/ltr/ltrharvest_tabout_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/ltr || mkdir -p obj/src/ltr
-cc -c src/ltr/ltrdigest_strand_assign_visitor.c -o obj/src/ltr/ltrdigest_strand_assign_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrdigest_strand_assign_visitor.o
-cc -c src/ltr/ltrharvest_tabout_visitor.c -o obj/src/ltr/ltrharvest_tabout_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gth/sa.c -o obj/src/gth/sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/sa.o
+cc -c src/ltr/ltrharvest_tabout_visitor.c -o obj/src/ltr/ltrharvest_tabout_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/ltr || mkdir -p obj/src/ltr
-cc -c src/ltr/pdom_model_set.c -o obj/src/ltr/pdom_model_set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/ltr/ltr_cluster_stream.c -o obj/src/ltr/ltr_cluster_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltr_cluster_stream.o
 cc -c src/ltr/ltrharvest_fasta_out_stream.c -o obj/src/ltr/ltrharvest_fasta_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrharvest_fasta_out_stream.o
+cc -c src/ltr/ltr_refseq_match_stream.c -o obj/src/ltr/ltr_refseq_match_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltr_refseq_match_stream.o
+cc -c src/ltr/pdom_model_set.c -o obj/src/ltr/pdom_model_set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/ltr/ltrdigest_strand_assign_visitor.c -o obj/src/ltr/ltrdigest_strand_assign_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrdigest_strand_assign_visitor.o
 test -d obj/src/mgth || mkdir -p obj/src/mgth
-cc -c src/ltr/ltrharvest_tabout_stream.c -o obj/src/ltr/ltrharvest_tabout_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrharvest_tabout_stream.o
 cc -c src/mgth/metagenomethreader.c -o obj/src/mgth/metagenomethreader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/ltr/ltrharvest_tabout_stream.c -o obj/src/ltr/ltrharvest_tabout_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrharvest_tabout_stream.o
 test -d obj/src/mgth || mkdir -p obj/src/mgth
 cc -c src/mgth/mg_codon.c -o obj/src/mgth/mg_codon.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/mgth || mkdir -p obj/src/mgth
+cc -c src/ltr/ltrharvest_fasta_out_visitor.c -o obj/src/ltr/ltrharvest_fasta_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrharvest_fasta_out_visitor.o
 cc -c src/mgth/mg_combinedscore.c -o obj/src/mgth/mg_combinedscore.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrdigest_pbs_visitor.o
 test -d obj/src/mgth || mkdir -p obj/src/mgth
 test -d obj/src/mgth || mkdir -p obj/src/mgth
 cc -c src/mgth/mg_compute_gene_prediction.c -o obj/src/mgth/mg_compute_gene_prediction.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
@@ -3853,108 +3892,102 @@
 cc -c src/mgth/mg_codon.c -o obj/src/mgth/mg_codon.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/mgth/mg_codon.o
 test -d obj/src/mgth || mkdir -p obj/src/mgth
 cc -c src/mgth/mg_outputwriter.c -o obj/src/mgth/mg_outputwriter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/ltr/ltr_refseq_match_stream.c -o obj/src/ltr/ltr_refseq_match_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltr_refseq_match_stream.o
 test -d obj/src/mgth || mkdir -p obj/src/mgth
+cc -c src/ltr/ltrdigest_ppt_visitor.c -o obj/src/ltr/ltrdigest_ppt_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrdigest_ppt_visitor.o
 cc -c src/mgth/mg_reverse.c -o obj/src/mgth/mg_reverse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/ltr/ltrharvest_fasta_out_visitor.c -o obj/src/ltr/ltrharvest_fasta_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrharvest_fasta_out_visitor.o
-cc -c src/ltr/ltrharvest_tabout_visitor.c -o obj/src/ltr/ltrharvest_tabout_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrharvest_tabout_visitor.o
 cc -c src/ltr/pdom_model_set.c -o obj/src/ltr/pdom_model_set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/pdom_model_set.o
 test -d obj/src/mgth || mkdir -p obj/src/mgth
+cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrdigest_file_out_stream.o
 cc -c src/mgth/mg_xmlparser.c -o obj/src/mgth/mg_xmlparser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
+cc -c src/ltr/ltrharvest_tabout_visitor.c -o obj/src/ltr/ltrharvest_tabout_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrharvest_tabout_visitor.o
+cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/canvas.c -o obj/src/annotationsketch/canvas.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gth/bssm_param.c -o obj/src/gth/bssm_param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gth/bssm_param.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
-cc -c src/annotationsketch/canvas_cairo.c -o obj/src/annotationsketch/canvas_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrdigest_pbs_visitor.o
-cc -c src/mgth/mg_computepath.c -o obj/src/mgth/mg_computepath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/mgth/mg_computepath.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
+cc -c src/annotationsketch/canvas_cairo.c -o obj/src/annotationsketch/canvas_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/annotationsketch/canvas_cairo_context.c -o obj/src/annotationsketch/canvas_cairo_context.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
+cc -c src/mgth/mg_computepath.c -o obj/src/mgth/mg_computepath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/mgth/mg_computepath.o
 cc -c src/annotationsketch/canvas_cairo_file.c -o obj/src/annotationsketch/canvas_cairo_file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/mgth/mg_reverse.c -o obj/src/mgth/mg_reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/mgth/mg_reverse.o
-cc -c src/ltr/ltrdigest_ppt_visitor.c -o obj/src/ltr/ltrdigest_ppt_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrdigest_ppt_visitor.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/color.c -o obj/src/annotationsketch/color.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/mgth/mg_reverse.c -o obj/src/mgth/mg_reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/mgth/mg_reverse.o
+cc -c src/annotationsketch/canvas_cairo_context.c -o obj/src/annotationsketch/canvas_cairo_context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/canvas_cairo_context.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
-cc -c src/annotationsketch/canvas.c -o obj/src/annotationsketch/canvas.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/canvas.o
 cc -c src/annotationsketch/coords.c -o obj/src/annotationsketch/coords.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrdigest_file_out_stream.o
+cc -c src/mgth/metagenomethreader.c -o obj/src/mgth/metagenomethreader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/mgth/metagenomethreader.o
+cc -c src/annotationsketch/color.c -o obj/src/annotationsketch/color.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/color.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
+cc -c src/annotationsketch/canvas.c -o obj/src/annotationsketch/canvas.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/canvas.o
 cc -c src/annotationsketch/custom_track.c -o obj/src/annotationsketch/custom_track.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/annotationsketch/color.c -o obj/src/annotationsketch/color.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/color.o
-cc -c src/annotationsketch/canvas_cairo_context.c -o obj/src/annotationsketch/canvas_cairo_context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/canvas_cairo_context.o
+cc -c src/annotationsketch/canvas_cairo_file.c -o obj/src/annotationsketch/canvas_cairo_file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/canvas_cairo_file.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/custom_track_example.c -o obj/src/annotationsketch/custom_track_example.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/annotationsketch/coords.c -o obj/src/annotationsketch/coords.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/coords.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/custom_track_gc_content.c -o obj/src/annotationsketch/custom_track_gc_content.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/annotationsketch/canvas_cairo_file.c -o obj/src/annotationsketch/canvas_cairo_file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/canvas_cairo_file.o
-cc -c src/mgth/mg_xmlparser.c -o obj/src/mgth/mg_xmlparser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/mgth/mg_xmlparser.o
+cc -c src/mgth/mg_combinedscore.c -o obj/src/mgth/mg_combinedscore.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/mgth/mg_combinedscore.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/custom_track_script_wrapper.c -o obj/src/annotationsketch/custom_track_script_wrapper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/mgth/mg_xmlparser.c -o obj/src/mgth/mg_xmlparser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/mgth/mg_xmlparser.o
+cc -c src/annotationsketch/coords.c -o obj/src/annotationsketch/coords.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/coords.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/diagram.c -o obj/src/annotationsketch/diagram.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/annotationsketch/custom_track.c -o obj/src/annotationsketch/custom_track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/custom_track.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/drawing_range.c -o obj/src/annotationsketch/drawing_range.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/mgth/metagenomethreader.c -o obj/src/mgth/metagenomethreader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/mgth/metagenomethreader.o
-cc -c src/annotationsketch/custom_track_example.c -o obj/src/annotationsketch/custom_track_example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/custom_track_example.o
-cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/block.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
-cc -c src/mgth/mg_combinedscore.c -o obj/src/mgth/mg_combinedscore.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/mgth/mg_combinedscore.o
+cc -c src/annotationsketch/custom_track_example.c -o obj/src/annotationsketch/custom_track_example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/custom_track_example.o
 cc -c src/annotationsketch/element.c -o obj/src/annotationsketch/element.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/custom_track_script_wrapper.c -o obj/src/annotationsketch/custom_track_script_wrapper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/custom_track_script_wrapper.o
-cc -c src/annotationsketch/drawing_range.c -o obj/src/annotationsketch/drawing_range.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/drawing_range.o
+test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/graphics.c -o obj/src/annotationsketch/graphics.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/annotationsketch/custom_track.c -o obj/src/annotationsketch/custom_track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/custom_track.o
+cc -c src/mgth/mg_compute_gene_prediction.c -o obj/src/mgth/mg_compute_gene_prediction.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/mgth/mg_compute_gene_prediction.o
+cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/block.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/graphics_cairo.c -o obj/src/annotationsketch/graphics_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/ltr/ltrharvest_stream.c -o obj/src/ltr/ltrharvest_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrharvest_stream.o
+cc -c src/annotationsketch/drawing_range.c -o obj/src/annotationsketch/drawing_range.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/drawing_range.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
-cc -c src/mgth/mg_compute_gene_prediction.c -o obj/src/mgth/mg_compute_gene_prediction.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/mgth/mg_compute_gene_prediction.o
 cc -c src/annotationsketch/gt_sketch.c -o obj/src/annotationsketch/gt_sketch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/gt_sketch_page.c -o obj/src/annotationsketch/gt_sketch_page.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
-cc -c src/annotationsketch/image_info.c -o obj/src/annotationsketch/image_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
-cc -c src/annotationsketch/layout.c -o obj/src/annotationsketch/layout.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/annotationsketch/canvas_cairo.c -o obj/src/annotationsketch/canvas_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/canvas_cairo.o
+cc -c src/ltr/ltrdigest_pdom_visitor.c -o obj/src/ltr/ltrdigest_pdom_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrdigest_pdom_visitor.o
+cc -c src/annotationsketch/image_info.c -o obj/src/annotationsketch/image_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/annotationsketch/custom_track_gc_content.c -o obj/src/annotationsketch/custom_track_gc_content.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/custom_track_gc_content.o
+cc -c src/annotationsketch/layout.c -o obj/src/annotationsketch/layout.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/line.c -o obj/src/annotationsketch/line.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/annotationsketch/element.c -o obj/src/annotationsketch/element.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/element.o
+cc -c src/mgth/mg_outputwriter.c -o obj/src/mgth/mg_outputwriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/mgth/mg_outputwriter.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/line_breaker.c -o obj/src/annotationsketch/line_breaker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/ltr/ltrharvest_stream.c -o obj/src/ltr/ltrharvest_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrharvest_stream.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/line_breaker_bases.c -o obj/src/annotationsketch/line_breaker_bases.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
+cc -c src/annotationsketch/element.c -o obj/src/annotationsketch/element.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/element.o
+cc -c src/annotationsketch/canvas_cairo.c -o obj/src/annotationsketch/canvas_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/canvas_cairo.o
 cc -c src/annotationsketch/line_breaker_captions.c -o obj/src/annotationsketch/line_breaker_captions.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/luastyle.c -o obj/src/annotationsketch/luastyle.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/annotationsketch/image_info.c -o obj/src/annotationsketch/image_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/image_info.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
-cc -c src/annotationsketch/rec_map.c -o obj/src/annotationsketch/rec_map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
+cc -c src/annotationsketch/line_breaker.c -o obj/src/annotationsketch/line_breaker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/line_breaker.o
+cc -c src/annotationsketch/rec_map.c -o obj/src/annotationsketch/rec_map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/annotationsketch/style.c -o obj/src/annotationsketch/style.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/annotationsketch/line_breaker_bases.c -o obj/src/annotationsketch/line_breaker_bases.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/line_breaker_bases.o
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/text_width_calculator.c -o obj/src/annotationsketch/text_width_calculator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/annotationsketch/luastyle.c -o obj/src/annotationsketch/luastyle.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/luastyle.o
+test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
 cc -c src/annotationsketch/text_width_calculator_cairo.c -o obj/src/annotationsketch/text_width_calculator_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/annotationsketch/gt_sketch_page.c -o obj/src/annotationsketch/gt_sketch_page.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/gt_sketch_page.o
 cc -c src/annotationsketch/gt_sketch.c -o obj/src/annotationsketch/gt_sketch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/gt_sketch.o
-cc -c src/mgth/mg_outputwriter.c -o obj/src/mgth/mg_outputwriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/mgth/mg_outputwriter.o
-cc -c src/annotationsketch/line_breaker.c -o obj/src/annotationsketch/line_breaker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/line_breaker.o
-cc -c src/annotationsketch/luastyle.c -o obj/src/annotationsketch/luastyle.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/luastyle.o
-cc -c src/annotationsketch/rec_map.c -o obj/src/annotationsketch/rec_map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/rec_map.o
-cc -c src/annotationsketch/line_breaker_captions.c -o obj/src/annotationsketch/line_breaker_captions.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/line_breaker_captions.o
 cc -c src/annotationsketch/line.c -o obj/src/annotationsketch/line.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/line.o
-test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch
-cc -c src/annotationsketch/text_width_calculator.c -o obj/src/annotationsketch/text_width_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/text_width_calculator.o
+cc -c src/annotationsketch/line_breaker_captions.c -o obj/src/annotationsketch/line_breaker_captions.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/line_breaker_captions.o
 cc -c src/annotationsketch/track.c -o obj/src/annotationsketch/track.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 echo '[gathering public API symbols to obj/public_symbols.lst]'
 [gathering public API symbols to obj/public_symbols.lst]
@@ -3962,473 +3995,475 @@
 cat src/core/alphabet_api.h src/core/array2dim_api.h src/core/array_api.h src/core/assert_api.h src/core/basename_api.h src/core/bittab_api.h src/core/bsearch_api.h src/core/byte_popcount_api.h src/core/byte_select_api.h src/core/codon_api.h src/core/codon_iterator_api.h src/core/codon_iterator_encseq_api.h src/core/codon_iterator_simple_api.h src/core/countingsort_api.h src/core/cstr_api.h src/core/cstr_table_api.h src/core/deprecated_api.h src/core/disc_distri_api.h src/core/dlist_api.h src/core/encseq_api.h src/core/endianess_api.h src/core/error_api.h src/core/fasta_api.h src/core/file_api.h src/core/fileutils_api.h src/core/fptr_api.h src/core/grep_api.h src/core/hashmap_api.h src/core/init_api.h src/core/interval_tree_api.h src/core/log_api.h src/core/logger_api.h src/core/ma_api.h src/core/md5_encoder_api.h src/core/md5_fingerprint_api.h src/core/msort_api.h src/core/multithread_api.h src/core/option_api.h src/core/output_file_api.h src/core/parseutils_api.h src/core/phase_api.h src/core/qsort_r_api.h src/core/queue_api.h src/core/range_api.h src/core/readmode_api.h src/core/seq_iterator_api.h src/core/seq_iterator_fastq_api.h src/core/seq_iterator_sequence_buffer_api.h src/core/splitter_api.h src/core/str_api.h src/core/str_array_api.h src/core/strand_api.h src/core/strcmp_api.h src/core/symbol_api.h src/core/thread_api.h src/core/timer_api.h src/core/tool_api.h src/core/toolbox_api.h src/core/trans_table_api.h src/core/translator_api.h src/core/types_api.h src/core/undef_api.h src/core/unused_api.h src/core/version_api.h src/core/warning_api.h src/core/xansi_api.h src/extended/add_introns_stream_api.h src/extended/anno_db_gfflike_api.h src/extended/anno_db_schema_api.h src/extended/array_in_stream_api.h src/extended/array_out_stream_api.h src/extended/bed_in_stream_api.h src/extended/cds_stream_api.h src/extended/check_boundaries_visitor_api.h src/extended/comment_node_api.h src/extended/csa_stream_api.h src/extended/dup_feature_stream_api.h src/extended/eof_node_api.h src/extended/extract_feature_stream_api.h src/extended/feature_in_stream_api.h src/extended/feature_index_api.h src/extended/feature_index_memory_api.h src/extended/feature_node_api.h src/extended/feature_node_iterator_api.h src/extended/feature_out_stream_api.h src/extended/feature_stream_api.h src/extended/genome_node_api.h src/extended/gff3_in_stream_api.h src/extended/gff3_out_stream_api.h src/extended/gff3_parser_api.h src/extended/gff3_visitor_api.h src/extended/gtf_in_stream_api.h src/extended/gtf_out_stream_api.h src/extended/id_to_md5_stream_api.h src/extended/inter_feature_stream_api.h src/extended/match_api.h src/extended/match_blast_api.h src/extended/match_iterator_api.h src/extended/match_last_api.h src/extended/match_open_api.h src/extended/match_sw_api.h src/extended/match_visitor_api.h src/extended/md5_to_id_stream_api.h src/extended/merge_feature_stream_api.h src/extended/merge_stream_api.h src/extended/meta_node_api.h src/extended/node_stream_api.h src/extended/node_visitor_api.h src/extended/orf_iterator_api.h src/extended/rdb_api.h src/extended/rdb_mysql_api.h src/extended/rdb_sqlite_api.h src/extended/rdb_visitor_api.h src/extended/region_mapping_api.h src/extended/region_node_api.h src/extended/reverse_api.h src/extended/script_filter_api.h src/extended/script_wrapper_stream_api.h src/extended/script_wrapper_visitor_api.h src/extended/select_stream_api.h src/extended/sequence_node_api.h src/extended/set_source_visitor_api.h src/extended/sort_stream_api.h src/extended/stat_stream_api.h src/extended/tag_value_map_api.h src/extended/type_checker_api.h src/extended/type_checker_builtin_api.h src/extended/type_checker_obo_api.h src/extended/uniq_stream_api.h src/extended/visitor_stream_api.h src/extended/xrf_checker_api.h    src/ltr/ltr_classify_stream_api.h src/ltr/ltr_cluster_stream_api.h src/ltr/ltr_orf_annotator_stream_api.h src/ltr/ltr_refseq_match_stream_api.h  src/annotationsketch/block_api.h src/annotationsketch/canvas_api.h src/annotationsketch/canvas_cairo_context_api.h src/annotationsketch/canvas_cairo_file_api.h src/annotationsketch/color_api.h src/annotationsketch/custom_track_api.h src/annotationsketch/custom_track_gc_content_api.h src/annotationsketch/custom_track_script_wrapper_api.h src/annotationsketch/diagram_api.h src/annotationsketch/feature_index_api.h src/annotationsketch/feature_index_memory_api.h src/annotationsketch/feature_stream_api.h src/annotationsketch/graphics_api.h src/annotationsketch/graphics_cairo_api.h src/annotationsketch/image_info_api.h src/annotationsketch/layout_api.h src/annotationsketch/rec_map_api.h src/annotationsketch/style_api.h src/annotationsketch/text_width_calculator_api.h src/annotationsketch/text_width_calculator_cairo_api.h | tr ' ' '\n' \
  | grep -E '^(gt_[0-9a-zA-Z_]+)(\[|\()' \
  | cut -d'[' -f1 | cut -d'(' -f1 | sort | uniq > obj/public_symbols.lst.src
+cc -c src/annotationsketch/gt_sketch_page.c -o obj/src/annotationsketch/gt_sketch_page.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/gt_sketch_page.o
+cc -c src/annotationsketch/rec_map.c -o obj/src/annotationsketch/rec_map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/rec_map.o
 test -d obj/src || mkdir -p obj/src
-cc -c src/annotationsketch/graphics.c -o obj/src/annotationsketch/graphics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/graphics.o
-cc -c src/ltr/ltrdigest_pdom_visitor.c -o obj/src/ltr/ltrdigest_pdom_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/ltr/ltrdigest_pdom_visitor.o
 cc -c src/gt.c -o obj/src/gt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/annotationsketch/diagram.c -o obj/src/annotationsketch/diagram.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/diagram.o
+cc -c src/annotationsketch/graphics.c -o obj/src/annotationsketch/graphics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/graphics.o
 cc -c src/annotationsketch/layout.c -o obj/src/annotationsketch/layout.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/layout.o
 cat src/core/alphabet.c src/core/array.c src/core/array2dim.c src/core/array2dim_sparse.c src/core/array3dim.c src/core/basename.c src/core/bioseq.c src/core/bioseq_col.c src/core/bioseq_iterator.c src/core/bitbuffer.c src/core/bitpackstringop.c src/core/bitpackstringop16.c src/core/bitpackstringop32.c src/core/bitpackstringop64.c src/core/bitpackstringop8.c src/core/bittab.c src/core/bool_matrix.c src/core/bsearch.c src/core/byte_popcount.c src/core/byte_select.c src/core/checkbitpackarray.c src/core/checkbitpackstring-int.c src/core/checkbitpackstring.c src/core/checkbitpackstring16.c src/core/checkbitpackstring32.c src/core/checkbitpackstring64.c src/core/checkbitpackstring8.c src/core/class_alloc.c src/core/class_alloc_lock.c src/core/codon_iterator.c src/core/codon_iterator_encseq.c src/core/codon_iterator_simple.c src/core/colorspace.c src/core/combinatorics.c src/core/compact_ulong_store.c src/core/compat.c src/core/complement.c src/core/countingsort.c src/core/cstr.c src/core/cstr_array.c src/core/cstr_table.c src/core/csvline_reader.c src/core/desc_buffer.c src/core/disc_distri.c src/core/dlist.c src/core/dual-pivot-qsort.c src/core/dyn_bittab.c src/core/dynalloc.c src/core/eansi.c src/core/ebzlib.c src/core/encseq.c src/core/encseq_access_type.c src/core/encseq_col.c src/core/encseq_metadata.c src/core/encseq_options.c src/core/encseq_ptr.c src/core/endianess.c src/core/error.c src/core/example.c src/core/example_a.c src/core/example_b.c src/core/ezlib.c src/core/fa.c src/core/fasta.c src/core/fasta_reader.c src/core/fasta_reader_fsm.c src/core/fasta_reader_rec.c src/core/fasta_reader_seqit.c src/core/fastq.c src/core/file.c src/core/fileutils.c src/core/gc_content.c src/core/grep.c src/core/gtdatapath.c src/core/hashmap.c src/core/hashtable.c src/core/init.c src/core/interval_tree.c src/core/io.c src/core/log.c src/core/logger.c src/core/ma.c src/core/mapspec.c src/core/mathsupport.c src/core/md5_encoder.c src/core/md5_fingerprint.c src/core/md5_seqid.c src/core/md5_tab.c src/core/msort.c src/core/multithread.c src/core/option.c src/core/orf.c src/core/output_file.c src/core/parseutils.c src/core/password_entry.c src/core/phase.c src/core/process.c src/core/progressbar.c src/core/qsort-ulong.c src/core/qsort_r.c src/core/quality.c src/core/queue.c src/core/radix_sort.c src/core/range.c src/core/readmode.c src/core/safearith.c src/core/score_function.c src/core/score_matrix.c src/core/seq.c src/core/seq_col.c src/core/seq_info_cache.c src/core/seq_iterator.c src/core/seq_iterator_fastq.c src/core/seq_iterator_sequence_buffer.c src/core/sequence_buffer.c src/core/sequence_buffer_embl.c src/core/sequence_buffer_fasta.c src/core/sequence_buffer_fastq.c src/core/sequence_buffer_gb.c src/core/sequence_buffer_plain.c src/core/showtime.c src/core/sig.c src/core/spacepeak.c src/core/splitter.c src/core/str.c src/core/str_array.c src/core/str_cache.c src/core/strand.c src/core/strcmp.c src/core/string_distri.c src/core/symbol.c src/core/thread.c src/core/timer.c src/core/tokenizer.c src/core/tool.c src/core/tool_iterator.c src/core/toolbox.c src/core/tooldriver.c src/core/trans_table.c src/core/translator.c src/core/unit_testing.c src/core/version.c src/core/versionfunc.c src/core/warning.c src/core/xansi.c src/core/xbsd.c src/core/xbzlib.c src/core/xposix.c src/core/xzlib.c src/core/yarandom.c src/extended/add_ids_stream.c src/extended/add_ids_visitor.c src/extended/add_introns_stream.c src/extended/affinealign.c src/extended/aligned_segment.c src/extended/aligned_segments_pile.c src/extended/alignment.c src/extended/anno_db_gfflike.c src/extended/anno_db_schema.c src/extended/array_in_stream.c src/extended/array_out_stream.c src/extended/assembly_stats_calculator.c src/extended/bed_in_stream.c src/extended/bed_parser.c src/extended/bitinstream.c src/extended/bitoutstream.c src/extended/blast_process_call.c src/extended/buffer_stream.c src/extended/cds_check_stream.c src/extended/cds_check_visitor.c src/extended/cds_stream.c src/extended/cds_visitor.c src/extended/chain.c src/extended/check_boundaries_visitor.c src/extended/chseqids_stream.c src/extended/clustered_set.c src/extended/clustered_set_uf.c src/extended/coin_hmm.c src/extended/collect_ids_visitor.c src/extended/comment_node.c src/extended/compressed_bitsequence.c src/extended/condenseq.c src/extended/condenseq_creator.c src/extended/condenseq_search_arguments.c src/extended/consensus_sa.c src/extended/csa_gene.c src/extended/csa_splice_form.c src/extended/csa_stream.c src/extended/csa_variable_strands.c src/extended/csa_visitor.c src/extended/cstr_iterator.c src/extended/diagonalbandalign.c src/extended/diagonalbandalign_affinegapcost.c src/extended/dice_hmm.c src/extended/dot_out_stream.c src/extended/dot_visitor.c src/extended/dup_feature_stream.c src/extended/dup_feature_visitor.c src/extended/editscript.c src/extended/elias_gamma.c src/extended/encdesc.c src/extended/encdesc_header_io.c src/extended/eof_node.c src/extended/evaluator.c src/extended/extract_feature_sequence.c src/extended/extract_feature_stream.c src/extended/extract_feature_visitor.c src/extended/fasta_header_iterator.c src/extended/feature_in_stream.c src/extended/feature_index.c src/extended/feature_index_memory.c src/extended/feature_info.c src/extended/feature_node.c src/extended/feature_node_iterator.c src/extended/feature_node_observer.c src/extended/feature_out_stream.c src/extended/feature_stream.c src/extended/feature_visitor.c src/extended/gap_str.c src/extended/genome_node.c src/extended/gff3_escaping.c src/extended/gff3_in_stream.c src/extended/gff3_in_stream_plain.c src/extended/gff3_linesorted_out_stream.c src/extended/gff3_numsorted_out_stream.c src/extended/gff3_out_stream.c src/extended/gff3_output.c src/extended/gff3_parser.c src/extended/gff3_visitor.c src/extended/globalchaining.c src/extended/golomb.c src/extended/gtdatahelp.c src/extended/gtf_in_stream.c src/extended/gtf_out_stream.c src/extended/gtf_parser.c src/extended/gtf_visitor.c src/extended/hcr.c src/extended/hmm.c src/extended/hpol_processor.c src/extended/huffcode.c src/extended/id_to_md5_stream.c src/extended/id_to_md5_visitor.c src/extended/inter_feature_stream.c src/extended/inter_feature_visitor.c src/extended/intset.c src/extended/intset_16.c src/extended/intset_32.c src/extended/intset_8.c src/extended/intset_combined.c src/extended/io_function_pointers.c src/extended/kmer_database.c src/extended/linearalign.c src/extended/linearalign_affinegapcost.c src/extended/linspace_management.c src/extended/load_stream.c src/extended/luahelper.c src/extended/luaserialize.c src/extended/mapping.c src/extended/match.c src/extended/match_blast.c src/extended/match_iterator.c src/extended/match_iterator_blast.c src/extended/match_iterator_last.c src/extended/match_iterator_open.c src/extended/match_iterator_sw.c src/extended/match_last.c src/extended/match_open.c src/extended/match_sw.c src/extended/match_visitor.c src/extended/maxcoordvalue.c src/extended/md5_to_id_stream.c src/extended/md5_to_id_visitor.c src/extended/md5set.c src/extended/merge_feature_stream.c src/extended/merge_feature_visitor.c src/extended/merge_stream.c src/extended/meta_node.c src/extended/multi_sanitizer_visitor.c src/extended/multieoplist.c src/extended/mutate.c src/extended/node_stream.c src/extended/node_visitor.c src/extended/obo_parse_tree.c src/extended/obo_stanza.c src/extended/orf_finder_stream.c src/extended/orf_finder_visitor.c src/extended/orf_iterator.c src/extended/orphanage.c src/extended/permute_words.c src/extended/popcount_tab.c src/extended/priority_queue.c src/extended/ranked_list.c src/extended/rbtree.c src/extended/rcr.c src/extended/rdb.c src/extended/rdb_sqlite.c src/extended/rdb_visitor.c src/extended/reconstructalignment.c src/extended/region_mapping.c src/extended/region_node.c src/extended/region_node_builder.c src/extended/regioncov_visitor.c src/extended/regular_seqid.c src/extended/reverse.c src/extended/rmq.c src/extended/safe_popen.c src/extended/sam_alignment.c src/extended/sam_query_name_iterator.c src/extended/samfile_encseq_mapping.c src/extended/samfile_iterator.c src/extended/sampling.c src/extended/scorehandler.c src/extended/script_filter.c src/extended/script_wrapper_stream.c src/extended/script_wrapper_visitor.c src/extended/select_stream.c src/extended/select_visitor.c src/extended/seqid2file.c src/extended/seqid2seqnum_mapping.c src/extended/seqpos_classifier.c src/extended/sequence_node.c src/extended/sequence_node_add_stream.c src/extended/sequence_node_out_stream.c src/extended/sequence_node_out_visitor.c src/extended/set_source_visitor.c src/extended/shredder.c src/extended/snp_annotator_stream.c src/extended/snp_annotator_visitor.c src/extended/sort_stream.c src/extended/spec_results.c src/extended/spec_visitor.c src/extended/splice_site_info_stream.c src/extended/splice_site_info_visitor.c src/extended/splicedseq.c src/extended/squarealign.c src/extended/sspliced_alignment.c src/extended/sspliced_alignment_parsing.c src/extended/stat_stream.c src/extended/stat_visitor.c src/extended/stream_evaluator.c src/extended/string_matching.c src/extended/swalign.c src/extended/tag_value_map.c src/extended/targetbest_select_stream.c src/extended/tidy_region_node_stream.c src/extended/tidy_region_node_visitor.c src/extended/tir_stream.c src/extended/transcript_bittabs.c src/extended/transcript_counts.c src/extended/transcript_evaluators.c src/extended/transcript_exons.c src/extended/transcript_used_exons.c src/extended/type_checker.c src/extended/type_checker_builtin.c src/extended/type_checker_obo.c src/extended/type_graph.c src/extended/type_node.c src/extended/typecheck_info.c src/extended/uint64hashtable.c src/extended/union_find.c src/extended/uniq_stream.c src/extended/visitor_stream.c src/extended/wtree.c src/extended/wtree_encseq.c src/extended/xrf_abbr_entry.c src/extended/xrf_abbr_parse_tree.c src/extended/xrf_checker.c src/extended/xrfcheck_info.c src/gtlua/alphabet_lua.c src/gtlua/annotationsketch_lua.c src/gtlua/bittab_lua.c src/gtlua/canvas_lua.c src/gtlua/cds_stream_lua.c src/gtlua/csa_stream_lua.c src/gtlua/diagram_lua.c src/gtlua/encseq_lua.c src/gtlua/feature_index_lua.c src/gtlua/feature_node_iterator_lua.c src/gtlua/feature_stream_lua.c src/gtlua/feature_visitor_lua.c src/gtlua/genome_node_lua.c src/gtlua/genome_stream_lua.c src/gtlua/genome_visitor_lua.c src/gtlua/gt_lua.c src/gtlua/gtcore_lua.c src/gtlua/gtext_lua.c src/gtlua/image_info_lua.c src/gtlua/layout_lua.c src/gtlua/mathsupport_lua.c src/gtlua/range_lua.c src/gtlua/region_mapping_lua.c src/gtlua/score_matrix_lua.c src/gtlua/stream_evaluator_lua.c src/gtlua/translate_lua.c src/match/apmeoveridx.c src/match/asqg_writer.c src/match/bare-encseq.c src/match/bcktab.c src/match/cgr_spacedseed.c src/match/chain2dim.c src/match/chainofin.c src/match/cutendpfx.c src/match/diagband-struct.c src/match/diagbandseed.c src/match/dist-short.c src/match/echoseq.c src/match/eis-blockcomp-param.c src/match/eis-blockcomp.c src/match/eis-bwtseq-construct.c src/match/eis-bwtseq-context-param.c src/match/eis-bwtseq-context.c src/match/eis-bwtseq-extinfo.c src/match/eis-bwtseq-param.c src/match/eis-bwtseq-sass.c src/match/eis-bwtseq.c src/match/eis-encidxseq-construct.c src/match/eis-encidxseq-param.c src/match/eis-encidxseq.c src/match/eis-mrangealphabet.c src/match/eis-sa-common.c src/match/eis-seqblocktranslate.c src/match/eis-seqranges.c src/match/eis-sequencemultiread.c src/match/eis-specialsrank.c src/match/eis-suffixarray-interface.c src/match/eis-suffixerator-interface.c src/match/eis-voiditf.c src/match/encseq2offset.c src/match/enum-patt.c src/match/esa-bottomup.c src/match/esa-dfs.c src/match/esa-lcpintervals.c src/match/esa-map.c src/match/esa-maxpairs.c src/match/esa-merge.c src/match/esa-minunique.c src/match/esa-mmsearch.c src/match/esa-scanprj.c src/match/esa-seqread.c src/match/esa-shulen.c src/match/esa-splititv-simple.c src/match/esa-splititv.c src/match/esa-spmitvs.c src/match/esa-spmsk.c src/match/esa_lcpintervals_visitor.c src/match/esa_spmitvs_visitor.c src/match/esa_visitor.c src/match/firstcodes-accum.c src/match/firstcodes-cache.c src/match/firstcodes-insert.c src/match/firstcodes-psbuf.c src/match/firstcodes-scan.c src/match/firstcodes-spacelog.c src/match/firstcodes-tab.c src/match/firstcodes.c src/match/fmi-fwduni.c src/match/fmi-keyval.c src/match/fmi-locate.c src/match/fmi-map.c src/match/fmi-mapspec.c src/match/fmi-mkindex.c src/match/fmi-save.c src/match/fmi-sufbwtstream.c src/match/ft-eoplist.c src/match/ft-front-generation.c src/match/ft-front-prune.c src/match/ft-polish.c src/match/ft-trimstat.c src/match/gfa_writer.c src/match/giextract.c src/match/greedyedist.c src/match/greedyfwdmat.c src/match/hashfirstcodes.c src/match/hlk-version.c src/match/hplstore.c src/match/idx-limdfs.c src/match/idxlocali.c src/match/idxlocalidp.c src/match/idxlocalisw.c src/match/index_options.c src/match/initbasepower.c src/match/initeqsvec.c src/match/iter-window.c src/match/karlin_altschul_stat.c src/match/kmer2string.c src/match/lua_tools.c src/match/marksubstring.c src/match/merger-trie.c src/match/mssufpat.c src/match/myersapm.c src/match/nullcols.c src/match/optionargmode.c src/match/pck-count-nodes.c src/match/pckbucket.c src/match/pckdfs.c src/match/prsqualint.c src/match/pssm.c src/match/querymatch-align.c src/match/querymatch-display.c src/match/querymatch.c src/match/radixsort_str.c src/match/randomcodes-correct.c src/match/randomcodes-find-seldom.c src/match/randomcodes-hpcorrect.c src/match/randomcodes-insert.c src/match/randomcodes-sfx-partssuf.c src/match/randomcodes-tab.c src/match/randomcodes.c src/match/rdj-cntlist.c src/match/rdj-contfind-bottomup.c src/match/rdj-contfinder.c src/match/rdj-contigpaths.c src/match/rdj-contigs-graph.c src/match/rdj-contigs-writer.c src/match/rdj-errfind.c src/match/rdj-ovlfind-bf.c src/match/rdj-ovlfind-dp.c src/match/rdj-ovlfind-gusfield.c src/match/rdj-ovlfind-kmp.c src/match/rdj-pairwise.c src/match/rdj-spmfind.c src/match/rdj-spmlist.c src/match/rdj-spmproc.c src/match/rdj-strgraph.c src/match/rdj-twobitenc-editor.c src/match/rdj-version.c src/match/reads2twobit.c src/match/reads_libraries_table.c src/match/rectangle-store.c src/match/revcompl.c src/match/seed-extend-iter.c src/match/seed-extend.c src/match/seed_extend_parts.c src/match/seqabstract.c src/match/seqnumrelpos.c src/match/sfx-apfxlen.c src/match/sfx-bentsedg.c src/match/sfx-bltrie.c src/match/sfx-copysort.c src/match/sfx-diffcov.c src/match/sfx-enumcodes.c src/match/sfx-lcpvalues.c src/match/sfx-linlcp.c src/match/sfx-lwcheck.c src/match/sfx-mappedstr.c src/match/sfx-maprange.c src/match/sfx-opt.c src/match/sfx-outprj.c src/match/sfx-partssuf.c src/match/sfx-radixsort.c src/match/sfx-run.c src/match/sfx-sain.c src/match/sfx-shortreadsort.c src/match/sfx-suffixer.c src/match/sfx-suffixgetset.c src/match/sfx-suftaborder.c src/match/shu-dfs.c src/match/shu-divergence.c src/match/shu-encseq-gc.c src/match/shu-genomediff.c src/match/shu_unitfile.c src/match/spaced-seeds.c src/match/specialrank.c src/match/spmsuftab.c src/match/squarededist.c src/match/substriter.c src/match/tagerator.c src/match/test-mappedstr.c src/match/test-maxpairs.c src/match/test-mergeesa.c src/match/test-mtrieins.c src/match/test-pairwise.c src/match/turnwheels.c src/match/twobits2kmers.c src/match/tyr-map.c src/match/tyr-mersplit.c src/match/tyr-mkindex.c src/match/tyr-occratio.c src/match/tyr-search.c src/match/xdrop.c src/gth/ags.c src/gth/ags_build.c src/gth/align_dna.c src/gth/align_protein.c src/gth/backtrace_path.c src/gth/bssm_helper.c src/gth/bssm_param.c src/gth/bssm_param_rmsd.c src/gth/bssm_seq_processor.c src/gth/bssm_train_stream.c src/gth/bssm_train_visitor.c src/gth/call_info.c src/gth/chain_collection.c src/gth/chaining.c src/gth/compute_scores.c src/gth/desc_cache.c src/gth/dp_options_core.c src/gth/dp_options_est.c src/gth/dp_options_postpro.c src/gth/dp_param.c src/gth/dp_scores_protein.c src/gth/editoperation.c src/gth/gff3_pgl_visitor.c src/gth/gff3_sa_visitor.c src/gth/gt_gth.c src/gth/gt_gthbssmbuild.c src/gth/gt_gthbssmfileinfo.c src/gth/gt_gthbssmprint.c src/gth/gt_gthbssmrmsd.c src/gth/gt_gthbssmtrain.c src/gth/gt_gthconsensus.c src/gth/gt_gthfilestat.c src/gth/gt_gthmkbssmfiles.c src/gth/gt_gthsplit.c src/gth/gthalignment.c src/gth/gthchain.c src/gth/gthcluster.c src/gth/gthcutoffsminimal.c src/gth/gthcutoffsrelaxed.c src/gth/gthcutoffsstrict.c src/gth/gthmatch.c src/gth/gthorf.c src/gth/gthoutput.c src/gth/gthsadistri.c src/gth/gthsortags.c src/gth/gthsplicesitescr.c src/gth/gthtrans.c src/gth/gthtravalign.c src/gth/gthverbosefunc.c src/gth/gthverbosefuncvm.c src/gth/gthxml.c src/gth/indent.c src/gth/input.c src/gth/intermediate.c src/gth/md5_cache.c src/gth/parse_options.c src/gth/path_matrix.c src/gth/path_walker.c src/gth/pgl.c src/gth/pgl_collection.c src/gth/pgl_visitor.c src/gth/proc_sa_collection.c src/gth/region_factory.c src/gth/run_header.c src/gth/sa.c src/gth/sa_cmp.c src/gth/sa_collection.c src/gth/sa_filter.c src/gth/sa_visitor.c src/gth/seq_con.c src/gth/similarity_filter.c src/gth/splice_site_model.c src/gth/spliced_seq.c src/gth/stat.c src/gth/time.c src/gth/txt_pgl_visitor.c src/gth/txt_sa_visitor.c src/gth/xml_final_sa_visitor.c src/gth/xml_inter_sa_visitor.c src/gth/xml_pgl_visitor.c src/ltr/gt_ltrclustering.c src/ltr/gt_ltrdigest.c src/ltr/gt_ltrharvest.c src/ltr/ltr_classify_stream.c src/ltr/ltr_cluster_prepare_seq_visitor.c src/ltr/ltr_cluster_stream.c src/ltr/ltr_four_char_motif.c src/ltr/ltr_input_check_visitor.c src/ltr/ltr_orf_annotator_stream.c src/ltr/ltr_refseq_match_stream.c src/ltr/ltrdigest_file_out_stream.c src/ltr/ltrdigest_pbs_visitor.c src/ltr/ltrdigest_pdom_visitor.c src/ltr/ltrdigest_ppt_visitor.c src/ltr/ltrdigest_strand_assign_visitor.c src/ltr/ltrharvest_fasta_out_stream.c src/ltr/ltrharvest_fasta_out_visitor.c src/ltr/ltrharvest_stream.c src/ltr/ltrharvest_tabout_stream.c src/ltr/ltrharvest_tabout_visitor.c src/ltr/pdom_model_set.c src/mgth/metagenomethreader.c src/mgth/mg_codon.c src/mgth/mg_combinedscore.c src/mgth/mg_compute_gene_prediction.c src/mgth/mg_computepath.c src/mgth/mg_outputwriter.c src/mgth/mg_reverse.c src/mgth/mg_xmlparser.c src/annotationsketch/block.c src/annotationsketch/canvas.c src/annotationsketch/canvas_cairo.c src/annotationsketch/canvas_cairo_context.c src/annotationsketch/canvas_cairo_file.c src/annotationsketch/color.c src/annotationsketch/coords.c src/annotationsketch/custom_track.c src/annotationsketch/custom_track_example.c src/annotationsketch/custom_track_gc_content.c src/annotationsketch/custom_track_script_wrapper.c src/annotationsketch/diagram.c src/annotationsketch/drawing_range.c src/annotationsketch/element.c src/annotationsketch/graphics.c src/annotationsketch/graphics_cairo.c src/annotationsketch/gt_sketch.c src/annotationsketch/gt_sketch_page.c src/annotationsketch/image_info.c src/annotationsketch/layout.c src/annotationsketch/line.c src/annotationsketch/line_breaker.c src/annotationsketch/line_breaker_bases.c src/annotationsketch/line_breaker_captions.c src/annotationsketch/luastyle.c src/annotationsketch/rec_map.c src/annotationsketch/style.c src/annotationsketch/text_width_calculator.c src/annotationsketch/text_width_calculator_cairo.c src/annotationsketch/track.c | tr ' ' '\n' \
  | grep -E '(gt_[0-9a-zA-Z_]+_p)(\[|\()' \
  | cut -d'(' -f1 >> obj/public_symbols.lst.src
-cc -c src/annotationsketch/text_width_calculator_cairo.c -o obj/src/annotationsketch/text_width_calculator_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/text_width_calculator_cairo.o
-test -d obj/src || mkdir -p obj/src
-cc -c src/gtr.c -o obj/src/gtr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/annotationsketch/diagram.c -o obj/src/annotationsketch/diagram.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/diagram.o
 test -d obj/src || mkdir -p obj/src
 test -d obj/src || mkdir -p obj/src
+cc -c src/gtr.c -o obj/src/gtr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gtt.c -o obj/src/gtt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/annotationsketch/text_width_calculator.c -o obj/src/annotationsketch/text_width_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/text_width_calculator.o
+test -d obj/src || mkdir -p obj/src
 cc -c src/interactive.c -o obj/src/interactive.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_bed_to_gff3.c -o obj/src/tools/gt_bed_to_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/gt.c -o obj/src/gt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gt.o
+test -d obj/src/tools || mkdir -p obj/src/tools
+test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_cds.c -o obj/src/tools/gt_cds.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_chain2dim.c -o obj/src/tools/gt_chain2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 for L in `cat obj/public_symbols.lst.src`; do \
   printf "\t\t$L;\n" >> obj/public_symbols.lst; \
 done;
 test -d obj/src/tools || mkdir -p obj/src/tools
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_bed_to_gff3.c -o obj/src/tools/gt_bed_to_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-printf "\t\tgt_array_add_ptr;\n" >> obj/public_symbols.lst
-cc -c src/tools/gt_cds.c -o obj/src/tools/gt_cds.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-printf "\t\tgt_str_get_mem;\n" >> obj/public_symbols.lst
-printf '\tlocal: *;\n\t};\n' >> obj/public_symbols.lst
-test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_chain2dim.c -o obj/src/tools/gt_chain2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_chseqids.c -o obj/src/tools/gt_chseqids.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_clean.c -o obj/src/tools/gt_clean.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/tools || mkdir -p obj/src/tools
+printf "\t\tgt_array_add_ptr;\n" >> obj/public_symbols.lst
 cc -c src/tools/gt_compreads.c -o obj/src/tools/gt_compreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+printf "\t\tgt_str_get_mem;\n" >> obj/public_symbols.lst
+cc -c src/tools/gt_bed_to_gff3.c -o obj/src/tools/gt_bed_to_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_bed_to_gff3.o
+printf '\tlocal: *;\n\t};\n' >> obj/public_symbols.lst
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/annotationsketch/text_width_calculator_cairo.c -o obj/src/annotationsketch/text_width_calculator_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/text_width_calculator_cairo.o
 cc -c src/tools/gt_compreads_compress.c -o obj/src/tools/gt_compreads_compress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_bed_to_gff3.c -o obj/src/tools/gt_bed_to_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_bed_to_gff3.o
+cc -c src/interactive.c -o obj/src/interactive.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/interactive.o
+cc -c src/tools/gt_cds.c -o obj/src/tools/gt_cds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_cds.o
+cc -c src/tools/gt_chseqids.c -o obj/src/tools/gt_chseqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_chseqids.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_compreads_decompress.c -o obj/src/tools/gt_compreads_decompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_cds.c -o obj/src/tools/gt_cds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_cds.o
-cc -c src/interactive.c -o obj/src/interactive.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/interactive.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/gtt.c -o obj/src/gtt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtt.o
 cc -c src/tools/gt_chain2dim.c -o obj/src/tools/gt_chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_chain2dim.o
-cc -c src/annotationsketch/style.c -o obj/src/annotationsketch/style.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/style.o
-cc -c src/tools/gt_chseqids.c -o obj/src/tools/gt_chseqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_chseqids.o
+cc -c src/tools/gt_clean.c -o obj/src/tools/gt_clean.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_clean.o
+test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_compreads_refcompress.c -o obj/src/tools/gt_compreads_refcompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/gtt.c -o obj/src/gtt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtt.o
 cc -c src/tools/gt_compreads.c -o obj/src/tools/gt_compreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_compreads.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_compreads_refdecompress.c -o obj/src/tools/gt_compreads_refdecompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_clean.c -o obj/src/tools/gt_clean.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_clean.o
-test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_compressedbits.c -o obj/src/tools/gt_compressedbits.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/annotationsketch/track.c -o obj/src/annotationsketch/track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/track.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_condenseq.c -o obj/src/tools/gt_condenseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_compreads_compress.c -o obj/src/tools/gt_compreads_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_compreads_compress.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_condenseq_blast.c -o obj/src/tools/gt_condenseq_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/gtr.c -o obj/src/gtr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtr.o
+cc -c src/tools/gt_condenseq_blast.c -o obj/src/tools/gt_condenseq_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_condenseq_compress.c -o obj/src/tools/gt_condenseq_compress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_condenseq.c -o obj/src/tools/gt_condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_condenseq.o
+cc -c src/gtr.c -o obj/src/gtr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/gtr.o
+cc -c src/annotationsketch/track.c -o obj/src/annotationsketch/track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/track.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_condenseq_extract.c -o obj/src/tools/gt_condenseq_extract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_compreads_decompress.c -o obj/src/tools/gt_compreads_decompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_compreads_decompress.o
-cc -c src/tools/gt_compreads_refcompress.c -o obj/src/tools/gt_compreads_refcompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_compreads_refcompress.o
-cc -c src/tools/gt_compreads_refdecompress.c -o obj/src/tools/gt_compreads_refdecompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_compreads_refdecompress.o
-cc -c src/tools/gt_compressedbits.c -o obj/src/tools/gt_compressedbits.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_compressedbits.o
+cc -c src/annotationsketch/graphics_cairo.c -o obj/src/annotationsketch/graphics_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/graphics_cairo.o
+cc -c src/tools/gt_condenseq.c -o obj/src/tools/gt_condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_condenseq.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_condenseq_hmmsearch.c -o obj/src/tools/gt_condenseq_hmmsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_compreads_compress.c -o obj/src/tools/gt_compreads_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_compreads_compress.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_compreads_refdecompress.c -o obj/src/tools/gt_compreads_refdecompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_compreads_refdecompress.o
 cc -c src/tools/gt_condenseq_info.c -o obj/src/tools/gt_condenseq_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/annotationsketch/graphics_cairo.c -o obj/src/annotationsketch/graphics_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/graphics_cairo.o
 cc -c src/tools/gt_condenseq_search.c -o obj/src/tools/gt_condenseq_search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_compreads_decompress.c -o obj/src/tools/gt_compreads_decompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_compreads_decompress.o
+cc -c src/tools/gt_compreads_refcompress.c -o obj/src/tools/gt_compreads_refcompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_compreads_refcompress.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_congruence.c -o obj/src/tools/gt_congruence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_consensus_sa.c -o obj/src/tools/gt_consensus_sa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_convertseq.c -o obj/src/tools/gt_convertseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_convertseq.c -o obj/src/tools/gt_convertseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_csa.c -o obj/src/tools/gt_csa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/annotationsketch/style.c -o obj/src/annotationsketch/style.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/annotationsketch/style.o
+cc -c src/tools/gt_compressedbits.c -o obj/src/tools/gt_compressedbits.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_compressedbits.o
+test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_dev.c -o obj/src/tools/gt_dev.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_condenseq_compress.c -o obj/src/tools/gt_condenseq_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_condenseq_compress.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_dev.c -o obj/src/tools/gt_dev.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_dot.c -o obj/src/tools/gt_dot.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_condenseq_extract.c -o obj/src/tools/gt_condenseq_extract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_condenseq_extract.o
-cc -c src/tools/gt_condenseq_info.c -o obj/src/tools/gt_condenseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_condenseq_info.o
-test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_dupfeat.c -o obj/src/tools/gt_dupfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_condenseq_info.c -o obj/src/tools/gt_condenseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_condenseq_info.o
+cc -c src/tools/gt_condenseq_extract.c -o obj/src/tools/gt_condenseq_extract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_condenseq_extract.o
 cc -c src/tools/gt_condenseq_search.c -o obj/src/tools/gt_condenseq_search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_condenseq_search.o
 cc -c src/tools/gt_consensus_sa.c -o obj/src/tools/gt_consensus_sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_consensus_sa.o
+cc -c src/tools/gt_csa.c -o obj/src/tools/gt_csa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_csa.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_encseq.c -o obj/src/tools/gt_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_convertseq.c -o obj/src/tools/gt_convertseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_convertseq.o
 cc -c src/tools/gt_congruence.c -o obj/src/tools/gt_congruence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_congruence.o
-cc -c src/tools/gt_csa.c -o obj/src/tools/gt_csa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_csa.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_dot.c -o obj/src/tools/gt_dot.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_dot.o
-cc -c src/tools/gt_condenseq_hmmsearch.c -o obj/src/tools/gt_condenseq_hmmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_condenseq_hmmsearch.o
 cc -c src/tools/gt_encseq2spm.c -o obj/src/tools/gt_encseq2spm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_encseq.c -o obj/src/tools/gt_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq.o
-test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_dev.c -o obj/src/tools/gt_dev.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_dev.o
-cc -c src/tools/gt_dupfeat.c -o obj/src/tools/gt_dupfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_dupfeat.o
-cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
+test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_encseq_bitextract.c -o obj/src/tools/gt_encseq_bitextract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_dot.c -o obj/src/tools/gt_dot.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_dot.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_encseq_check.c -o obj/src/tools/gt_encseq_check.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_encseq_decode.c -o obj/src/tools/gt_encseq_decode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_encseq_check.c -o obj/src/tools/gt_encseq_check.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_encseq_decode.c -o obj/src/tools/gt_encseq_decode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_dupfeat.c -o obj/src/tools/gt_dupfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_dupfeat.o
+cc -c src/tools/gt_convertseq.c -o obj/src/tools/gt_convertseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_convertseq.o
 cc -c src/tools/gt_encseq_encode.c -o obj/src/tools/gt_encseq_encode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_encseq_info.c -o obj/src/tools/gt_encseq_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_encseq_md5.c -o obj/src/tools/gt_encseq_md5.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_encseq.c -o obj/src/tools/gt_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_encseq_md5.c -o obj/src/tools/gt_encseq_md5.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_encseq_sample.c -o obj/src/tools/gt_encseq_sample.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_condenseq_hmmsearch.c -o obj/src/tools/gt_condenseq_hmmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_condenseq_hmmsearch.o
 cc -c src/tools/gt_eval.c -o obj/src/tools/gt_eval.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_encseq2spm.c -o obj/src/tools/gt_encseq2spm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq2spm.o
 cc -c src/tools/gt_extractfeat.c -o obj/src/tools/gt_extractfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_extractseq.c -o obj/src/tools/gt_extractseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_extracttarget.c -o obj/src/tools/gt_extracttarget.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq_bench.o
 cc -c src/tools/gt_encseq_bitextract.c -o obj/src/tools/gt_encseq_bitextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq_bitextract.o
 cc -c src/tools/gt_encseq_check.c -o obj/src/tools/gt_encseq_check.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq_check.o
+cc -c src/tools/gt_encseq_md5.c -o obj/src/tools/gt_encseq_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq_md5.o
+cc -c src/tools/gt_eval.c -o obj/src/tools/gt_eval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_eval.o
+cc -c src/tools/gt_encseq2spm.c -o obj/src/tools/gt_encseq2spm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq2spm.o
+cc -c src/tools/gt_encseq_encode.c -o obj/src/tools/gt_encseq_encode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq_encode.o
+cc -c src/tools/gt_condenseq_blast.c -o obj/src/tools/gt_condenseq_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_condenseq_blast.o
+cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq_bench.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_fastq_sample.c -o obj/src/tools/gt_fastq_sample.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_encseq_decode.c -o obj/src/tools/gt_encseq_decode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq_decode.o
 cc -c src/tools/gt_featureindex.c -o obj/src/tools/gt_featureindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_encseq_encode.c -o obj/src/tools/gt_encseq_encode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq_encode.o
-cc -c src/tools/gt_encseq_md5.c -o obj/src/tools/gt_encseq_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq_md5.o
-cc -c src/tools/gt_condenseq_blast.c -o obj/src/tools/gt_condenseq_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_condenseq_blast.o
-cc -c src/tools/gt_eval.c -o obj/src/tools/gt_eval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_eval.o
-cc -c src/tools/gt_extractfeat.c -o obj/src/tools/gt_extractfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_extractfeat.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_encseq_sample.c -o obj/src/tools/gt_encseq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq_sample.o
 cc -c src/tools/gt_fingerprint.c -o obj/src/tools/gt_fingerprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_encseq_decode.c -o obj/src/tools/gt_encseq_decode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq_decode.o
-test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_gdiffcalc.c -o obj/src/tools/gt_gdiffcalc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_extracttarget.c -o obj/src/tools/gt_extracttarget.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_extracttarget.o
+cc -c src/tools/gt_extractfeat.c -o obj/src/tools/gt_extractfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_extractfeat.o
+test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_genomediff.c -o obj/src/tools/gt_genomediff.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_encseq_sample.c -o obj/src/tools/gt_encseq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq_sample.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_gff3.c -o obj/src/tools/gt_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_encseq_info.c -o obj/src/tools/gt_encseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq_info.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_featureindex.c -o obj/src/tools/gt_featureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_featureindex.o
-cc -c src/tools/gt_gff3_to_gtf.c -o obj/src/tools/gt_gff3_to_gtf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_fastq_sample.c -o obj/src/tools/gt_fastq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_fastq_sample.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_gff3_to_gtf.c -o obj/src/tools/gt_gff3_to_gtf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_gff3validator.c -o obj/src/tools/gt_gff3validator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_gtf_to_gff3.c -o obj/src/tools/gt_gtf_to_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
-test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_guessprot.c -o obj/src/tools/gt_guessprot.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_extracttarget.c -o obj/src/tools/gt_extracttarget.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_extracttarget.o
+test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_hop.c -o obj/src/tools/gt_hop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_extractseq.c -o obj/src/tools/gt_extractseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_extractseq.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_gff3.c -o obj/src/tools/gt_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_gff3.o
 cc -c src/tools/gt_id_to_md5.c -o obj/src/tools/gt_id_to_md5.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_gff3_to_gtf.c -o obj/src/tools/gt_gff3_to_gtf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_gff3_to_gtf.o
-cc -c src/tools/gt_gtf_to_gff3.c -o obj/src/tools/gt_gtf_to_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_gtf_to_gff3.o
-cc -c src/tools/gt_gff3validator.c -o obj/src/tools/gt_gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_gff3validator.o
-cc -c src/tools/gt_encseq_info.c -o obj/src/tools/gt_encseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_encseq_info.o
+cc -c src/tools/gt_extractseq.c -o obj/src/tools/gt_extractseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_extractseq.o
+cc -c src/tools/gt_fastq_sample.c -o obj/src/tools/gt_fastq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_fastq_sample.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_featureindex.c -o obj/src/tools/gt_featureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_featureindex.o
 cc -c src/tools/gt_idxlocali.c -o obj/src/tools/gt_idxlocali.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_guessprot.c -o obj/src/tools/gt_guessprot.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_guessprot.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_inlineseq_add.c -o obj/src/tools/gt_inlineseq_add.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_gtf_to_gff3.c -o obj/src/tools/gt_gtf_to_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_gtf_to_gff3.o
+cc -c src/tools/gt_gff3_to_gtf.c -o obj/src/tools/gt_gff3_to_gtf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_gff3_to_gtf.o
+cc -c src/tools/gt_gff3validator.c -o obj/src/tools/gt_gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_gff3validator.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_inlineseq_split.c -o obj/src/tools/gt_inlineseq_split.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_guessprot.c -o obj/src/tools/gt_guessprot.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_guessprot.o
+cc -c src/tools/gt_inlineseq_split.c -o obj/src/tools/gt_inlineseq_split.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_gff3.c -o obj/src/tools/gt_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_gff3.o
 cc -c src/tools/gt_interfeat.c -o obj/src/tools/gt_interfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_gdiffcalc.c -o obj/src/tools/gt_gdiffcalc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_gdiffcalc.o
-test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_id_to_md5.c -o obj/src/tools/gt_id_to_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_id_to_md5.o
+test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_kmer_database.c -o obj/src/tools/gt_kmer_database.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_fingerprint.c -o obj/src/tools/gt_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_fingerprint.o
-cc -c src/tools/gt_genomediff.c -o obj/src/tools/gt_genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_genomediff.o
-cc -c src/tools/gt_inlineseq_add.c -o obj/src/tools/gt_inlineseq_add.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_inlineseq_add.o
-cc -c src/tools/gt_inlineseq_split.c -o obj/src/tools/gt_inlineseq_split.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_inlineseq_split.o
+cc -c src/tools/gt_gdiffcalc.c -o obj/src/tools/gt_gdiffcalc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_gdiffcalc.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_linspace_align.c -o obj/src/tools/gt_linspace_align.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_genomediff.c -o obj/src/tools/gt_genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_genomediff.o
+cc -c src/tools/gt_fingerprint.c -o obj/src/tools/gt_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_fingerprint.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_hop.c -o obj/src/tools/gt_hop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_hop.o
+cc -c src/tools/gt_idxlocali.c -o obj/src/tools/gt_idxlocali.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_idxlocali.o
 cc -c src/tools/gt_loccheck.c -o obj/src/tools/gt_loccheck.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_idxlocali.c -o obj/src/tools/gt_idxlocali.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_idxlocali.o
 cc -c src/tools/gt_magicmatch.c -o obj/src/tools/gt_magicmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_interfeat.c -o obj/src/tools/gt_interfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_interfeat.o
+cc -c src/tools/gt_inlineseq_add.c -o obj/src/tools/gt_inlineseq_add.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_inlineseq_add.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_matchtool.c -o obj/src/tools/gt_matchtool.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_loccheck.c -o obj/src/tools/gt_loccheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_loccheck.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_matstat.c -o obj/src/tools/gt_matstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_md5_to_id.c -o obj/src/tools/gt_md5_to_id.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_inlineseq_split.c -o obj/src/tools/gt_inlineseq_split.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_inlineseq_split.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_merge.c -o obj/src/tools/gt_merge.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_mergeesa.c -o obj/src/tools/gt_mergeesa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_interfeat.c -o obj/src/tools/gt_interfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_interfeat.o
+cc -c src/tools/gt_loccheck.c -o obj/src/tools/gt_loccheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_loccheck.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_mergefeat.c -o obj/src/tools/gt_mergefeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_hop.c -o obj/src/tools/gt_hop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_hop.o
 cc -c src/tools/gt_mgth.c -o obj/src/tools/gt_mgth.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_magicmatch.c -o obj/src/tools/gt_magicmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_magicmatch.o
 cc -c src/tools/gt_mkfeatureindex.c -o obj/src/tools/gt_mkfeatureindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_md5_to_id.c -o obj/src/tools/gt_md5_to_id.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_md5_to_id.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_kmer_database.c -o obj/src/tools/gt_kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_kmer_database.o
-cc -c src/tools/gt_merge.c -o obj/src/tools/gt_merge.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_merge.o
-cc -c src/tools/gt_matstat.c -o obj/src/tools/gt_matstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_matstat.o
-cc -c src/tools/gt_mergeesa.c -o obj/src/tools/gt_mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_mergeesa.o
-cc -c src/tools/gt_mergefeat.c -o obj/src/tools/gt_mergefeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_mergefeat.o
 cc -c src/tools/gt_mkfmindex.c -o obj/src/tools/gt_mkfmindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_mgth.c -o obj/src/tools/gt_mgth.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_mgth.o
-test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_magicmatch.c -o obj/src/tools/gt_magicmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_magicmatch.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_mergeesa.c -o obj/src/tools/gt_mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_mergeesa.o
 cc -c src/tools/gt_mmapandread.c -o obj/src/tools/gt_mmapandread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_orffinder.c -o obj/src/tools/gt_orffinder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_mkfeatureindex.c -o obj/src/tools/gt_mkfeatureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_mkfeatureindex.o
+cc -c src/tools/gt_md5_to_id.c -o obj/src/tools/gt_md5_to_id.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_md5_to_id.o
+cc -c src/tools/gt_merge.c -o obj/src/tools/gt_merge.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_merge.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_orffinder.c -o obj/src/tools/gt_orffinder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_matchtool.c -o obj/src/tools/gt_matchtool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_matchtool.o
+cc -c src/tools/gt_mergefeat.c -o obj/src/tools/gt_mergefeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_mergefeat.o
 cc -c src/tools/gt_packedindex.c -o obj/src/tools/gt_packedindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_packedindex_chk_integrity.c -o obj/src/tools/gt_packedindex_chk_integrity.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_mkfmindex.c -o obj/src/tools/gt_mkfmindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_mkfmindex.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_packedindex_chk_integrity.c -o obj/src/tools/gt_packedindex_chk_integrity.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_packedindex_chk_search.c -o obj/src/tools/gt_packedindex_chk_search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_mgth.c -o obj/src/tools/gt_mgth.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_mgth.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_packedindex_mkctxmap.c -o obj/src/tools/gt_packedindex_mkctxmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_linspace_align.c -o obj/src/tools/gt_linspace_align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_linspace_align.o
+cc -c src/tools/gt_kmer_database.c -o obj/src/tools/gt_kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_kmer_database.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_mmapandread.c -o obj/src/tools/gt_mmapandread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_mmapandread.o
 cc -c src/tools/gt_packedindex_trsuftab.c -o obj/src/tools/gt_packedindex_trsuftab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_matstat.c -o obj/src/tools/gt_matstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_matstat.o
+cc -c src/tools/gt_matchtool.c -o obj/src/tools/gt_matchtool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_matchtool.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_mkfeatureindex.c -o obj/src/tools/gt_mkfeatureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_mkfeatureindex.o
 cc -c src/tools/gt_paircmp.c -o obj/src/tools/gt_paircmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_mmapandread.c -o obj/src/tools/gt_mmapandread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_mmapandread.o
+test -d obj/src/tools || mkdir -p obj/src/tools
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_packedindex.c -o obj/src/tools/gt_packedindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_packedindex.o
 cc -c src/tools/gt_parsexrf.c -o obj/src/tools/gt_parsexrf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_prebwt.c -o obj/src/tools/gt_prebwt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_readjoiner.c -o obj/src/tools/gt_readjoiner.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_packedindex_chk_integrity.c -o obj/src/tools/gt_packedindex_chk_integrity.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_packedindex_chk_integrity.o
-test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_readjoiner_asqg.c -o obj/src/tools/gt_readjoiner_asqg.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_orffinder.c -o obj/src/tools/gt_orffinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_orffinder.o
-cc -c src/tools/gt_parsexrf.c -o obj/src/tools/gt_parsexrf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_parsexrf.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_packedindex_chk_integrity.c -o obj/src/tools/gt_packedindex_chk_integrity.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_packedindex_chk_integrity.o
+cc -c src/tools/gt_readjoiner_asqg.c -o obj/src/tools/gt_readjoiner_asqg.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_readjoiner_assembly.c -o obj/src/tools/gt_readjoiner_assembly.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_parsexrf.c -o obj/src/tools/gt_parsexrf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_parsexrf.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_readjoiner_cgraph.c -o obj/src/tools/gt_readjoiner_cgraph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_readjoiner_cnttest.c -o obj/src/tools/gt_readjoiner_cnttest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_packedindex_trsuftab.c -o obj/src/tools/gt_packedindex_trsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_packedindex_trsuftab.o
 cc -c src/tools/gt_packedindex_mkctxmap.c -o obj/src/tools/gt_packedindex_mkctxmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_packedindex_mkctxmap.o
-cc -c src/tools/gt_prebwt.c -o obj/src/tools/gt_prebwt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_prebwt.o
+cc -c src/tools/gt_packedindex_trsuftab.c -o obj/src/tools/gt_packedindex_trsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_packedindex_trsuftab.o
 cc -c src/tools/gt_readjoiner.c -o obj/src/tools/gt_readjoiner.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner.o
-cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_patternmatch.o
-cc -c src/tools/gt_paircmp.c -o obj/src/tools/gt_paircmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_paircmp.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_prebwt.c -o obj/src/tools/gt_prebwt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_prebwt.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_readjoiner_cnttest.c -o obj/src/tools/gt_readjoiner_cnttest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_readjoiner_correct.c -o obj/src/tools/gt_readjoiner_correct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_readjoiner_gfa.c -o obj/src/tools/gt_readjoiner_gfa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_packedindex_chk_search.c -o obj/src/tools/gt_packedindex_chk_search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_packedindex_chk_search.o
+cc -c src/tools/gt_readjoiner_gfa.c -o obj/src/tools/gt_readjoiner_gfa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_readjoiner_graph.c -o obj/src/tools/gt_readjoiner_graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_readjoiner_overlap.c -o obj/src/tools/gt_readjoiner_overlap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_linspace_align.c -o obj/src/tools/gt_linspace_align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_linspace_align.o
 cc -c src/tools/gt_readjoiner_prefilter.c -o obj/src/tools/gt_readjoiner_prefilter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_patternmatch.o
+cc -c src/tools/gt_paircmp.c -o obj/src/tools/gt_paircmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_paircmp.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_readjoiner_spmtest.c -o obj/src/tools/gt_readjoiner_spmtest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_readjoiner_spmtest.c -o obj/src/tools/gt_readjoiner_spmtest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_readreads.c -o obj/src/tools/gt_readreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_readjoiner_asqg.c -o obj/src/tools/gt_readjoiner_asqg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_asqg.o
-cc -c src/tools/gt_readjoiner_cnttest.c -o obj/src/tools/gt_readjoiner_cnttest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_cnttest.o
 cc -c src/tools/gt_regioncov.c -o obj/src/tools/gt_regioncov.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_readjoiner_cgraph.c -o obj/src/tools/gt_readjoiner_cgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_cgraph.o
+cc -c src/tools/gt_readjoiner_correct.c -o obj/src/tools/gt_readjoiner_correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_correct.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_repfind.c -o obj/src/tools/gt_repfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_readjoiner_cgraph.c -o obj/src/tools/gt_readjoiner_cgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_cgraph.o
+cc -c src/tools/gt_readjoiner_cnttest.c -o obj/src/tools/gt_readjoiner_cnttest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_cnttest.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_readjoiner_correct.c -o obj/src/tools/gt_readjoiner_correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_correct.o
 cc -c src/tools/gt_sain.c -o obj/src/tools/gt_sain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_sam_interface.c -o obj/src/tools/gt_sam_interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_readjoiner_asqg.c -o obj/src/tools/gt_readjoiner_asqg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_asqg.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_regioncov.c -o obj/src/tools/gt_regioncov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_regioncov.o
 cc -c src/tools/gt_script_filter.c -o obj/src/tools/gt_script_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_seed_extend.c -o obj/src/tools/gt_seed_extend.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_readreads.c -o obj/src/tools/gt_readreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readreads.o
-cc -c src/tools/gt_regioncov.c -o obj/src/tools/gt_regioncov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_regioncov.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_select.c -o obj/src/tools/gt_select.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_readjoiner_overlap.c -o obj/src/tools/gt_readjoiner_overlap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_overlap.o
-test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_readjoiner_spmtest.c -o obj/src/tools/gt_readjoiner_spmtest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_spmtest.o
+test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_readjoiner_overlap.c -o obj/src/tools/gt_readjoiner_overlap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_overlap.o
 cc -c src/tools/gt_seq.c -o obj/src/tools/gt_seq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_readjoiner_gfa.c -o obj/src/tools/gt_readjoiner_gfa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_gfa.o
-cc -c src/tools/gt_script_filter.c -o obj/src/tools/gt_script_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_script_filter.o
+cc -c src/tools/gt_readreads.c -o obj/src/tools/gt_readreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readreads.o
+cc -c src/tools/gt_readjoiner_prefilter.c -o obj/src/tools/gt_readjoiner_prefilter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_prefilter.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_sam_interface.c -o obj/src/tools/gt_sam_interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_sam_interface.o
+cc -c src/tools/gt_readjoiner_gfa.c -o obj/src/tools/gt_readjoiner_gfa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_gfa.o
 cc -c src/tools/gt_seqcorrect.c -o obj/src/tools/gt_seqcorrect.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_readjoiner_assembly.c -o obj/src/tools/gt_readjoiner_assembly.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_assembly.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_sam_interface.c -o obj/src/tools/gt_sam_interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_sam_interface.o
 cc -c src/tools/gt_seqfilter.c -o obj/src/tools/gt_seqfilter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_readjoiner_prefilter.c -o obj/src/tools/gt_readjoiner_prefilter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_prefilter.o
-cc -c src/tools/gt_sain.c -o obj/src/tools/gt_sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_sain.o
-cc -c src/tools/gt_readjoiner_graph.c -o obj/src/tools/gt_readjoiner_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_graph.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_script_filter.c -o obj/src/tools/gt_script_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_script_filter.o
 cc -c src/tools/gt_seqids.c -o obj/src/tools/gt_seqids.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_seqlensort.c -o obj/src/tools/gt_seqlensort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_seq.c -o obj/src/tools/gt_seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seq.o
+cc -c src/tools/gt_readjoiner_graph.c -o obj/src/tools/gt_readjoiner_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_readjoiner_graph.o
 cc -c src/tools/gt_seqmutate.c -o obj/src/tools/gt_seqmutate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_select.c -o obj/src/tools/gt_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_select.o
 cc -c src/tools/gt_seqorder.c -o obj/src/tools/gt_seqorder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_seqids.c -o obj/src/tools/gt_seqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqids.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_sain.c -o obj/src/tools/gt_sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_sain.o
 cc -c src/tools/gt_seqstat.c -o obj/src/tools/gt_seqstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_select.c -o obj/src/tools/gt_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_select.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_seqids.c -o obj/src/tools/gt_seqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqids.o
 cc -c src/tools/gt_seqtransform.c -o obj/src/tools/gt_seqtransform.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_seqlensort.c -o obj/src/tools/gt_seqlensort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqlensort.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_seq.c -o obj/src/tools/gt_seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seq.o
 cc -c src/tools/gt_seqtranslate.c -o obj/src/tools/gt_seqtranslate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_seqfilter.c -o obj/src/tools/gt_seqfilter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqfilter.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_sequniq.c -o obj/src/tools/gt_sequniq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_seqlensort.c -o obj/src/tools/gt_seqlensort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqlensort.o
 cc -c src/tools/gt_sfxmap.c -o obj/src/tools/gt_sfxmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_seqmutate.c -o obj/src/tools/gt_seqmutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqmutate.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_seqfilter.c -o obj/src/tools/gt_seqfilter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqfilter.o
-cc -c src/tools/gt_show_seedext.c -o obj/src/tools/gt_show_seedext.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_show_seedext.c -o obj/src/tools/gt_show_seedext.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_shredder.c -o obj/src/tools/gt_shredder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_repfind.c -o obj/src/tools/gt_repfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_repfind.o
-cc -c src/tools/gt_seqmutate.c -o obj/src/tools/gt_seqmutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqmutate.o
 cc -c src/tools/gt_shulen.c -o obj/src/tools/gt_shulen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_repfind.c -o obj/src/tools/gt_repfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_repfind.o
 cc -c src/tools/gt_simreads.c -o obj/src/tools/gt_simreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_seqtransform.c -o obj/src/tools/gt_seqtransform.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqtransform.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_skproto.c -o obj/src/tools/gt_skproto.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_snpper.c -o obj/src/tools/gt_snpper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_sequniq.c -o obj/src/tools/gt_sequniq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_sequniq.o
-cc -c src/tools/gt_seqtranslate.c -o obj/src/tools/gt_seqtranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqtranslate.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_sortbench.c -o obj/src/tools/gt_sortbench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_seqtranslate.c -o obj/src/tools/gt_seqtranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqtranslate.o
+cc -c src/tools/gt_seqorder.c -o obj/src/tools/gt_seqorder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqorder.o
+cc -c src/tools/gt_seed_extend.c -o obj/src/tools/gt_seed_extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seed_extend.o
+cc -c src/tools/gt_sequniq.c -o obj/src/tools/gt_sequniq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_sequniq.o
+cc -c src/tools/gt_seqcorrect.c -o obj/src/tools/gt_seqcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqcorrect.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_seqstat.c -o obj/src/tools/gt_seqstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqstat.o
 cc -c src/tools/gt_speck.c -o obj/src/tools/gt_speck.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_shulen.c -o obj/src/tools/gt_shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_shulen.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_splicesiteinfo.c -o obj/src/tools/gt_splicesiteinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_seqorder.c -o obj/src/tools/gt_seqorder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqorder.o
-cc -c src/tools/gt_seqcorrect.c -o obj/src/tools/gt_seqcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqcorrect.o
-cc -c src/tools/gt_seed_extend.c -o obj/src/tools/gt_seed_extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seed_extend.o
 cc -c src/tools/gt_shredder.c -o obj/src/tools/gt_shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_shredder.o
+cc -c src/tools/gt_splicesiteinfo.c -o obj/src/tools/gt_splicesiteinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_splitfasta.c -o obj/src/tools/gt_splitfasta.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_seqstat.c -o obj/src/tools/gt_seqstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_seqstat.o
-cc -c src/tools/gt_shulen.c -o obj/src/tools/gt_shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_shulen.o
-cc -c src/tools/gt_show_seedext.c -o obj/src/tools/gt_show_seedext.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_show_seedext.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_stat.c -o obj/src/tools/gt_stat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_skproto.c -o obj/src/tools/gt_skproto.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_skproto.o
 cc -c src/tools/gt_snpper.c -o obj/src/tools/gt_snpper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_snpper.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_suffixerator.c -o obj/src/tools/gt_suffixerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_splicesiteinfo.c -o obj/src/tools/gt_splicesiteinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_splicesiteinfo.o
 cc -c src/tools/gt_tagerator.c -o obj/src/tools/gt_tagerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_stat.c -o obj/src/tools/gt_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_stat.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_suffixerator.c -o obj/src/tools/gt_suffixerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_suffixerator.o
 cc -c src/tools/gt_tallymer.c -o obj/src/tools/gt_tallymer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_show_seedext.c -o obj/src/tools/gt_show_seedext.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_show_seedext.o
 test -d obj/src/tools || mkdir -p obj/src/tools
-cc -c src/tools/gt_template.c -o obj/src/tools/gt_template.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_skproto.c -o obj/src/tools/gt_skproto.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_skproto.o
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_template.c -o obj/src/tools/gt_template.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/tools/gt_tir.c -o obj/src/tools/gt_tir.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_suffixerator.c -o obj/src/tools/gt_suffixerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_suffixerator.o
+cc -c src/tools/gt_splicesiteinfo.c -o obj/src/tools/gt_splicesiteinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_splicesiteinfo.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_trieins.c -o obj/src/tools/gt_trieins.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_speck.c -o obj/src/tools/gt_speck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_speck.o
-cc -c src/tools/gt_tagerator.c -o obj/src/tools/gt_tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_tagerator.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_uniq.c -o obj/src/tools/gt_uniq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/tools || mkdir -p obj/src/tools
+cc -c src/tools/gt_speck.c -o obj/src/tools/gt_speck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_speck.o
+cc -c src/tools/gt_stat.c -o obj/src/tools/gt_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_stat.o
 cc -c src/tools/gt_wtree.c -o obj/src/tools/gt_wtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_simreads.c -o obj/src/tools/gt_simreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_simreads.o
 test -d obj/src/tools || mkdir -p obj/src/tools
 cc -c src/tools/gt_wtree_bench.c -o obj/src/tools/gt_wtree_bench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_splitfasta.c -o obj/src/tools/gt_splitfasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_splitfasta.o
+cc -c src/tools/gt_simreads.c -o obj/src/tools/gt_simreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_simreads.o
+cc -c src/tools/gt_tagerator.c -o obj/src/tools/gt_tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_tagerator.o
+test -d obj/src/examples || mkdir -p obj/src/examples
 cc -c src/tools/gt_template.c -o obj/src/tools/gt_template.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_template.o
 cc -c src/tools/gt_trieins.c -o obj/src/tools/gt_trieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_trieins.o
-cc -c src/tools/gt_uniq.c -o obj/src/tools/gt_uniq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_uniq.o
-test -d obj/src/examples || mkdir -p obj/src/examples
+cc -c src/tools/gt_splitfasta.c -o obj/src/tools/gt_splitfasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_splitfasta.o
 cc -c src/examples/custom_stream.c -o obj/src/examples/custom_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_uniq.c -o obj/src/tools/gt_uniq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_uniq.o
 test -d obj/src/examples || mkdir -p obj/src/examples
 cc -c src/examples/gff3sort.c -o obj/src/examples/gff3sort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/examples || mkdir -p obj/src/examples
-cc -c src/examples/gff3validator.c -o obj/src/examples/gff3validator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 test -d obj/src/examples || mkdir -p obj/src/examples
-cc -c src/tools/gt_wtree.c -o obj/src/tools/gt_wtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_wtree.o
 test -d obj/src/examples || mkdir -p obj/src/examples
+test -d obj/src/examples || mkdir -p obj/src/examples
+cc -c src/examples/gff3validator.c -o obj/src/examples/gff3validator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+cc -c src/tools/gt_wtree.c -o obj/src/tools/gt_wtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_wtree.o
 cc -c src/examples/noop.c -o obj/src/examples/noop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
 cc -c src/examples/sketch_constructed.c -o obj/src/examples/sketch_constructed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/examples/gff3validator.c -o obj/src/examples/gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/examples/gff3validator.o
-cc -c src/tools/gt_tir.c -o obj/src/tools/gt_tir.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_tir.o
-test -d obj/src/examples || mkdir -p obj/src/examples
-test -d obj/src/examples || mkdir -p obj/src/examples
 cc -c src/examples/sketch_parsed_with_ctrack.c -o obj/src/examples/sketch_parsed_with_ctrack.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
+test -d obj/src/examples || mkdir -p obj/src/examples
+cc -c src/tools/gt_tir.c -o obj/src/tools/gt_tir.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_tir.o
 cc -c src/examples/sketch_parsed_with_ordering.c -o obj/src/examples/sketch_parsed_with_ordering.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/tools/gt_tallymer.c -o obj/src/tools/gt_tallymer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_tallymer.o
-cc -c src/examples/gff3sort.c -o obj/src/examples/gff3sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/examples/gff3sort.o
 test -d obj/src/examples || mkdir -p obj/src/examples
+test -d lib || mkdir -p lib
 cc -c src/examples/sketch_parsed.c -o obj/src/examples/sketch_parsed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
-cc -c src/examples/custom_stream.c -o obj/src/examples/custom_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/examples/custom_stream.o
+ar r lib/libgenometools.a obj/src/core/alphabet.o obj/src/core/array.o obj/src/core/array2dim.o obj/src/core/array2dim_sparse.o obj/src/core/array3dim.o obj/src/core/basename.o obj/src/core/bioseq.o obj/src/core/bioseq_col.o obj/src/core/bioseq_iterator.o obj/src/core/bitbuffer.o obj/src/core/bitpackstringop.o obj/src/core/bitpackstringop16.o obj/src/core/bitpackstringop32.o obj/src/core/bitpackstringop64.o obj/src/core/bitpackstringop8.o obj/src/core/bittab.o obj/src/core/bool_matrix.o obj/src/core/bsearch.o obj/src/core/byte_popcount.o obj/src/core/byte_select.o obj/src/core/checkbitpackarray.o obj/src/core/checkbitpackstring-int.o obj/src/core/checkbitpackstring.o obj/src/core/checkbitpackstring16.o obj/src/core/checkbitpackstring32.o obj/src/core/checkbitpackstring64.o obj/src/core/checkbitpackstring8.o obj/src/core/class_alloc.o obj/src/core/class_alloc_lock.o obj/src/core/codon_iterator.o obj/src/core/codon_iterator_encseq.o obj/src/core/codon_iterator_simple.o obj/src/core/colorspace.o obj/src/core/combinatorics.o obj/src/core/compact_ulong_store.o obj/src/core/compat.o obj/src/core/complement.o obj/src/core/countingsort.o obj/src/core/cstr.o obj/src/core/cstr_array.o obj/src/core/cstr_table.o obj/src/core/csvline_reader.o obj/src/core/desc_buffer.o obj/src/core/disc_distri.o obj/src/core/dlist.o obj/src/core/dual-pivot-qsort.o obj/src/core/dyn_bittab.o obj/src/core/dynalloc.o obj/src/core/eansi.o obj/src/core/ebzlib.o obj/src/core/encseq.o obj/src/core/encseq_access_type.o obj/src/core/encseq_col.o obj/src/core/encseq_metadata.o obj/src/core/encseq_options.o obj/src/core/encseq_ptr.o obj/src/core/endianess.o obj/src/core/error.o obj/src/core/example.o obj/src/core/example_a.o obj/src/core/example_b.o obj/src/core/ezlib.o obj/src/core/fa.o obj/src/core/fasta.o obj/src/core/fasta_reader.o obj/src/core/fasta_reader_fsm.o obj/src/core/fasta_reader_rec.o obj/src/core/fasta_reader_seqit.o obj/src/core/fastq.o obj/src/core/file.o obj/src/core/fileutils.o obj/src/core/gc_content.o obj/src/core/grep.o obj/src/core/gtdatapath.o obj/src/core/hashmap.o obj/src/core/hashtable.o obj/src/core/init.o obj/src/core/interval_tree.o obj/src/core/io.o obj/src/core/log.o obj/src/core/logger.o obj/src/core/ma.o obj/src/core/mapspec.o obj/src/core/mathsupport.o obj/src/core/md5_encoder.o obj/src/core/md5_fingerprint.o obj/src/core/md5_seqid.o obj/src/core/md5_tab.o obj/src/core/msort.o obj/src/core/multithread.o obj/src/core/option.o obj/src/core/orf.o obj/src/core/output_file.o obj/src/core/parseutils.o obj/src/core/password_entry.o obj/src/core/phase.o obj/src/core/process.o obj/src/core/progressbar.o obj/src/core/qsort-ulong.o obj/src/core/qsort_r.o obj/src/core/quality.o obj/src/core/queue.o obj/src/core/radix_sort.o obj/src/core/range.o obj/src/core/readmode.o obj/src/core/safearith.o obj/src/core/score_function.o obj/src/core/score_matrix.o obj/src/core/seq.o obj/src/core/seq_col.o obj/src/core/seq_info_cache.o obj/src/core/seq_iterator.o obj/src/core/seq_iterator_fastq.o obj/src/core/seq_iterator_sequence_buffer.o obj/src/core/sequence_buffer.o obj/src/core/sequence_buffer_embl.o obj/src/core/sequence_buffer_fasta.o obj/src/core/sequence_buffer_fastq.o obj/src/core/sequence_buffer_gb.o obj/src/core/sequence_buffer_plain.o obj/src/core/showtime.o obj/src/core/sig.o obj/src/core/spacepeak.o obj/src/core/splitter.o obj/src/core/str.o obj/src/core/str_array.o obj/src/core/str_cache.o obj/src/core/strand.o obj/src/core/strcmp.o obj/src/core/string_distri.o obj/src/core/symbol.o obj/src/core/thread.o obj/src/core/timer.o obj/src/core/tokenizer.o obj/src/core/tool.o obj/src/core/tool_iterator.o obj/src/core/toolbox.o obj/src/core/tooldriver.o obj/src/core/trans_table.o obj/src/core/translator.o obj/src/core/unit_testing.o obj/src/core/version.o obj/src/core/versionfunc.o obj/src/core/warning.o obj/src/core/xansi.o obj/src/core/xbsd.o obj/src/core/xbzlib.o obj/src/core/xposix.o obj/src/core/xzlib.o obj/src/core/yarandom.o obj/src/extended/add_ids_stream.o obj/src/extended/add_ids_visitor.o obj/src/extended/add_introns_stream.o obj/src/extended/affinealign.o obj/src/extended/aligned_segment.o obj/src/extended/aligned_segments_pile.o obj/src/extended/alignment.o obj/src/extended/anno_db_gfflike.o obj/src/extended/anno_db_schema.o obj/src/extended/array_in_stream.o obj/src/extended/array_out_stream.o obj/src/extended/assembly_stats_calculator.o obj/src/extended/bed_in_stream.o obj/src/extended/bed_parser.o obj/src/extended/bitinstream.o obj/src/extended/bitoutstream.o obj/src/extended/blast_process_call.o obj/src/extended/buffer_stream.o obj/src/extended/cds_check_stream.o obj/src/extended/cds_check_visitor.o obj/src/extended/cds_stream.o obj/src/extended/cds_visitor.o obj/src/extended/chain.o obj/src/extended/check_boundaries_visitor.o obj/src/extended/chseqids_stream.o obj/src/extended/clustered_set.o obj/src/extended/clustered_set_uf.o obj/src/extended/coin_hmm.o obj/src/extended/collect_ids_visitor.o obj/src/extended/comment_node.o obj/src/extended/compressed_bitsequence.o obj/src/extended/condenseq.o obj/src/extended/condenseq_creator.o obj/src/extended/condenseq_search_arguments.o obj/src/extended/consensus_sa.o obj/src/extended/csa_gene.o obj/src/extended/csa_splice_form.o obj/src/extended/csa_stream.o obj/src/extended/csa_variable_strands.o obj/src/extended/csa_visitor.o obj/src/extended/cstr_iterator.o obj/src/extended/diagonalbandalign.o obj/src/extended/diagonalbandalign_affinegapcost.o obj/src/extended/dice_hmm.o obj/src/extended/dot_out_stream.o obj/src/extended/dot_visitor.o obj/src/extended/dup_feature_stream.o obj/src/extended/dup_feature_visitor.o obj/src/extended/editscript.o obj/src/extended/elias_gamma.o obj/src/extended/encdesc.o obj/src/extended/encdesc_header_io.o obj/src/extended/eof_node.o obj/src/extended/evaluator.o obj/src/extended/extract_feature_sequence.o obj/src/extended/extract_feature_stream.o obj/src/extended/extract_feature_visitor.o obj/src/extended/fasta_header_iterator.o obj/src/extended/feature_in_stream.o obj/src/extended/feature_index.o obj/src/extended/feature_index_memory.o obj/src/extended/feature_info.o obj/src/extended/feature_node.o obj/src/extended/feature_node_iterator.o obj/src/extended/feature_node_observer.o obj/src/extended/feature_out_stream.o obj/src/extended/feature_stream.o obj/src/extended/feature_visitor.o obj/src/extended/gap_str.o obj/src/extended/genome_node.o obj/src/extended/gff3_escaping.o obj/src/extended/gff3_in_stream.o obj/src/extended/gff3_in_stream_plain.o obj/src/extended/gff3_linesorted_out_stream.o obj/src/extended/gff3_numsorted_out_stream.o obj/src/extended/gff3_out_stream.o obj/src/extended/gff3_output.o obj/src/extended/gff3_parser.o obj/src/extended/gff3_visitor.o obj/src/extended/globalchaining.o obj/src/extended/golomb.o obj/src/extended/gtdatahelp.o obj/src/extended/gtf_in_stream.o obj/src/extended/gtf_out_stream.o obj/src/extended/gtf_parser.o obj/src/extended/gtf_visitor.o obj/src/extended/hcr.o obj/src/extended/hmm.o obj/src/extended/hpol_processor.o obj/src/extended/huffcode.o obj/src/extended/id_to_md5_stream.o obj/src/extended/id_to_md5_visitor.o obj/src/extended/inter_feature_stream.o obj/src/extended/inter_feature_visitor.o obj/src/extended/intset.o obj/src/extended/intset_16.o obj/src/extended/intset_32.o obj/src/extended/intset_8.o obj/src/extended/intset_combined.o obj/src/extended/io_function_pointers.o obj/src/extended/kmer_database.o obj/src/extended/linearalign.o obj/src/extended/linearalign_affinegapcost.o obj/src/extended/linspace_management.o obj/src/extended/load_stream.o obj/src/extended/luahelper.o obj/src/extended/luaserialize.o obj/src/extended/mapping.o obj/src/extended/match.o obj/src/extended/match_blast.o obj/src/extended/match_iterator.o obj/src/extended/match_iterator_blast.o obj/src/extended/match_iterator_last.o obj/src/extended/match_iterator_open.o obj/src/extended/match_iterator_sw.o obj/src/extended/match_last.o obj/src/extended/match_open.o obj/src/extended/match_sw.o obj/src/extended/match_visitor.o obj/src/extended/maxcoordvalue.o obj/src/extended/md5_to_id_stream.o obj/src/extended/md5_to_id_visitor.o obj/src/extended/md5set.o obj/src/extended/merge_feature_stream.o obj/src/extended/merge_feature_visitor.o obj/src/extended/merge_stream.o obj/src/extended/meta_node.o obj/src/extended/multi_sanitizer_visitor.o obj/src/extended/multieoplist.o obj/src/extended/mutate.o obj/src/extended/node_stream.o obj/src/extended/node_visitor.o obj/src/extended/obo_parse_tree.o obj/src/extended/obo_stanza.o obj/src/extended/orf_finder_stream.o obj/src/extended/orf_finder_visitor.o obj/src/extended/orf_iterator.o obj/src/extended/orphanage.o obj/src/extended/permute_words.o obj/src/extended/popcount_tab.o obj/src/extended/priority_queue.o obj/src/extended/ranked_list.o obj/src/extended/rbtree.o obj/src/extended/rcr.o obj/src/extended/rdb.o obj/src/extended/rdb_sqlite.o obj/src/extended/rdb_visitor.o obj/src/extended/reconstructalignment.o obj/src/extended/region_mapping.o obj/src/extended/region_node.o obj/src/extended/region_node_builder.o obj/src/extended/regioncov_visitor.o obj/src/extended/regular_seqid.o obj/src/extended/reverse.o obj/src/extended/rmq.o obj/src/extended/safe_popen.o obj/src/extended/sam_alignment.o obj/src/extended/sam_query_name_iterator.o obj/src/extended/samfile_encseq_mapping.o obj/src/extended/samfile_iterator.o obj/src/extended/sampling.o obj/src/extended/scorehandler.o obj/src/extended/script_filter.o obj/src/extended/script_wrapper_stream.o obj/src/extended/script_wrapper_visitor.o obj/src/extended/select_stream.o obj/src/extended/select_visitor.o obj/src/extended/seqid2file.o obj/src/extended/seqid2seqnum_mapping.o obj/src/extended/seqpos_classifier.o obj/src/extended/sequence_node.o obj/src/extended/sequence_node_add_stream.o obj/src/extended/sequence_node_out_stream.o obj/src/extended/sequence_node_out_visitor.o obj/src/extended/set_source_visitor.o obj/src/extended/shredder.o obj/src/extended/snp_annotator_stream.o obj/src/extended/snp_annotator_visitor.o obj/src/extended/sort_stream.o obj/src/extended/spec_results.o obj/src/extended/spec_visitor.o obj/src/extended/splice_site_info_stream.o obj/src/extended/splice_site_info_visitor.o obj/src/extended/splicedseq.o obj/src/extended/squarealign.o obj/src/extended/sspliced_alignment.o obj/src/extended/sspliced_alignment_parsing.o obj/src/extended/stat_stream.o obj/src/extended/stat_visitor.o obj/src/extended/stream_evaluator.o obj/src/extended/string_matching.o obj/src/extended/swalign.o obj/src/extended/tag_value_map.o obj/src/extended/targetbest_select_stream.o obj/src/extended/tidy_region_node_stream.o obj/src/extended/tidy_region_node_visitor.o obj/src/extended/tir_stream.o obj/src/extended/transcript_bittabs.o obj/src/extended/transcript_counts.o obj/src/extended/transcript_evaluators.o obj/src/extended/transcript_exons.o obj/src/extended/transcript_used_exons.o obj/src/extended/type_checker.o obj/src/extended/type_checker_builtin.o obj/src/extended/type_checker_obo.o obj/src/extended/type_graph.o obj/src/extended/type_node.o obj/src/extended/typecheck_info.o obj/src/extended/uint64hashtable.o obj/src/extended/union_find.o obj/src/extended/uniq_stream.o obj/src/extended/visitor_stream.o obj/src/extended/wtree.o obj/src/extended/wtree_encseq.o obj/src/extended/xrf_abbr_entry.o obj/src/extended/xrf_abbr_parse_tree.o obj/src/extended/xrf_checker.o obj/src/extended/xrfcheck_info.o obj/src/gtlua/alphabet_lua.o obj/src/gtlua/annotationsketch_lua.o obj/src/gtlua/bittab_lua.o obj/src/gtlua/canvas_lua.o obj/src/gtlua/cds_stream_lua.o obj/src/gtlua/csa_stream_lua.o obj/src/gtlua/diagram_lua.o obj/src/gtlua/encseq_lua.o obj/src/gtlua/feature_index_lua.o obj/src/gtlua/feature_node_iterator_lua.o obj/src/gtlua/feature_stream_lua.o obj/src/gtlua/feature_visitor_lua.o obj/src/gtlua/genome_node_lua.o obj/src/gtlua/genome_stream_lua.o obj/src/gtlua/genome_visitor_lua.o obj/src/gtlua/gt_lua.o obj/src/gtlua/gtcore_lua.o obj/src/gtlua/gtext_lua.o obj/src/gtlua/image_info_lua.o obj/src/gtlua/layout_lua.o obj/src/gtlua/mathsupport_lua.o obj/src/gtlua/range_lua.o obj/src/gtlua/region_mapping_lua.o obj/src/gtlua/score_matrix_lua.o obj/src/gtlua/stream_evaluator_lua.o obj/src/gtlua/translate_lua.o obj/src/match/apmeoveridx.o obj/src/match/asqg_writer.o obj/src/match/bare-encseq.o obj/src/match/bcktab.o obj/src/match/cgr_spacedseed.o obj/src/match/chain2dim.o obj/src/match/chainofin.o obj/src/match/cutendpfx.o obj/src/match/diagband-struct.o obj/src/match/diagbandseed.o obj/src/match/dist-short.o obj/src/match/echoseq.o obj/src/match/eis-blockcomp-param.o obj/src/match/eis-blockcomp.o obj/src/match/eis-bwtseq-construct.o obj/src/match/eis-bwtseq-context-param.o obj/src/match/eis-bwtseq-context.o obj/src/match/eis-bwtseq-extinfo.o obj/src/match/eis-bwtseq-param.o obj/src/match/eis-bwtseq-sass.o obj/src/match/eis-bwtseq.o obj/src/match/eis-encidxseq-construct.o obj/src/match/eis-encidxseq-param.o obj/src/match/eis-encidxseq.o obj/src/match/eis-mrangealphabet.o obj/src/match/eis-sa-common.o obj/src/match/eis-seqblocktranslate.o obj/src/match/eis-seqranges.o obj/src/match/eis-sequencemultiread.o obj/src/match/eis-specialsrank.o obj/src/match/eis-suffixarray-interface.o obj/src/match/eis-suffixerator-interface.o obj/src/match/eis-voiditf.o obj/src/match/encseq2offset.o obj/src/match/enum-patt.o obj/src/match/esa-bottomup.o obj/src/match/esa-dfs.o obj/src/match/esa-lcpintervals.o obj/src/match/esa-map.o obj/src/match/esa-maxpairs.o obj/src/match/esa-merge.o obj/src/match/esa-minunique.o obj/src/match/esa-mmsearch.o obj/src/match/esa-scanprj.o obj/src/match/esa-seqread.o obj/src/match/esa-shulen.o obj/src/match/esa-splititv-simple.o obj/src/match/esa-splititv.o obj/src/match/esa-spmitvs.o obj/src/match/esa-spmsk.o obj/src/match/esa_lcpintervals_visitor.o obj/src/match/esa_spmitvs_visitor.o obj/src/match/esa_visitor.o obj/src/match/firstcodes-accum.o obj/src/match/firstcodes-cache.o obj/src/match/firstcodes-insert.o obj/src/match/firstcodes-psbuf.o obj/src/match/firstcodes-scan.o obj/src/match/firstcodes-spacelog.o obj/src/match/firstcodes-tab.o obj/src/match/firstcodes.o obj/src/match/fmi-fwduni.o obj/src/match/fmi-keyval.o obj/src/match/fmi-locate.o obj/src/match/fmi-map.o obj/src/match/fmi-mapspec.o obj/src/match/fmi-mkindex.o obj/src/match/fmi-save.o obj/src/match/fmi-sufbwtstream.o obj/src/match/ft-eoplist.o obj/src/match/ft-front-generation.o obj/src/match/ft-front-prune.o obj/src/match/ft-polish.o obj/src/match/ft-trimstat.o obj/src/match/gfa_writer.o obj/src/match/giextract.o obj/src/match/greedyedist.o obj/src/match/greedyfwdmat.o obj/src/match/hashfirstcodes.o obj/src/match/hlk-version.o obj/src/match/hplstore.o obj/src/match/idx-limdfs.o obj/src/match/idxlocali.o obj/src/match/idxlocalidp.o obj/src/match/idxlocalisw.o obj/src/match/index_options.o obj/src/match/initbasepower.o obj/src/match/initeqsvec.o obj/src/match/iter-window.o obj/src/match/karlin_altschul_stat.o obj/src/match/kmer2string.o obj/src/match/lua_tools.o obj/src/match/marksubstring.o obj/src/match/merger-trie.o obj/src/match/mssufpat.o obj/src/match/myersapm.o obj/src/match/nullcols.o obj/src/match/optionargmode.o obj/src/match/pck-count-nodes.o obj/src/match/pckbucket.o obj/src/match/pckdfs.o obj/src/match/prsqualint.o obj/src/match/pssm.o obj/src/match/querymatch-align.o obj/src/match/querymatch-display.o obj/src/match/querymatch.o obj/src/match/radixsort_str.o obj/src/match/randomcodes-correct.o obj/src/match/randomcodes-find-seldom.o obj/src/match/randomcodes-hpcorrect.o obj/src/match/randomcodes-insert.o obj/src/match/randomcodes-sfx-partssuf.o obj/src/match/randomcodes-tab.o obj/src/match/randomcodes.o obj/src/match/rdj-cntlist.o obj/src/match/rdj-contfind-bottomup.o obj/src/match/rdj-contfinder.o obj/src/match/rdj-contigpaths.o obj/src/match/rdj-contigs-graph.o obj/src/match/rdj-contigs-writer.o obj/src/match/rdj-errfind.o obj/src/match/rdj-ovlfind-bf.o obj/src/match/rdj-ovlfind-dp.o obj/src/match/rdj-ovlfind-gusfield.o obj/src/match/rdj-ovlfind-kmp.o obj/src/match/rdj-pairwise.o obj/src/match/rdj-spmfind.o obj/src/match/rdj-spmlist.o obj/src/match/rdj-spmproc.o obj/src/match/rdj-strgraph.o obj/src/match/rdj-twobitenc-editor.o obj/src/match/rdj-version.o obj/src/match/reads2twobit.o obj/src/match/reads_libraries_table.o obj/src/match/rectangle-store.o obj/src/match/revcompl.o obj/src/match/seed-extend-iter.o obj/src/match/seed-extend.o obj/src/match/seed_extend_parts.o obj/src/match/seqabstract.o obj/src/match/seqnumrelpos.o obj/src/match/sfx-apfxlen.o obj/src/match/sfx-bentsedg.o obj/src/match/sfx-bltrie.o obj/src/match/sfx-copysort.o obj/src/match/sfx-diffcov.o obj/src/match/sfx-enumcodes.o obj/src/match/sfx-lcpvalues.o obj/src/match/sfx-linlcp.o obj/src/match/sfx-lwcheck.o obj/src/match/sfx-mappedstr.o obj/src/match/sfx-maprange.o obj/src/match/sfx-opt.o obj/src/match/sfx-outprj.o obj/src/match/sfx-partssuf.o obj/src/match/sfx-radixsort.o obj/src/match/sfx-run.o obj/src/match/sfx-sain.o obj/src/match/sfx-shortreadsort.o obj/src/match/sfx-suffixer.o obj/src/match/sfx-suffixgetset.o obj/src/match/sfx-suftaborder.o obj/src/match/shu-dfs.o obj/src/match/shu-divergence.o obj/src/match/shu-encseq-gc.o obj/src/match/shu-genomediff.o obj/src/match/shu_unitfile.o obj/src/match/spaced-seeds.o obj/src/match/specialrank.o obj/src/match/spmsuftab.o obj/src/match/squarededist.o obj/src/match/substriter.o obj/src/match/tagerator.o obj/src/match/test-mappedstr.o obj/src/match/test-maxpairs.o obj/src/match/test-mergeesa.o obj/src/match/test-mtrieins.o obj/src/match/test-pairwise.o obj/src/match/turnwheels.o obj/src/match/twobits2kmers.o obj/src/match/tyr-map.o obj/src/match/tyr-mersplit.o obj/src/match/tyr-mkindex.o obj/src/match/tyr-occratio.o obj/src/match/tyr-search.o obj/src/match/xdrop.o obj/src/gth/ags.o obj/src/gth/ags_build.o obj/src/gth/align_dna.o obj/src/gth/align_protein.o obj/src/gth/backtrace_path.o obj/src/gth/bssm_helper.o obj/src/gth/bssm_param.o obj/src/gth/bssm_param_rmsd.o obj/src/gth/bssm_seq_processor.o obj/src/gth/bssm_train_stream.o obj/src/gth/bssm_train_visitor.o obj/src/gth/call_info.o obj/src/gth/chain_collection.o obj/src/gth/chaining.o obj/src/gth/compute_scores.o obj/src/gth/desc_cache.o obj/src/gth/dp_options_core.o obj/src/gth/dp_options_est.o obj/src/gth/dp_options_postpro.o obj/src/gth/dp_param.o obj/src/gth/dp_scores_protein.o obj/src/gth/editoperation.o obj/src/gth/gff3_pgl_visitor.o obj/src/gth/gff3_sa_visitor.o obj/src/gth/gt_gth.o obj/src/gth/gt_gthbssmbuild.o obj/src/gth/gt_gthbssmfileinfo.o obj/src/gth/gt_gthbssmprint.o obj/src/gth/gt_gthbssmrmsd.o obj/src/gth/gt_gthbssmtrain.o obj/src/gth/gt_gthconsensus.o obj/src/gth/gt_gthfilestat.o obj/src/gth/gt_gthmkbssmfiles.o obj/src/gth/gt_gthsplit.o obj/src/gth/gthalignment.o obj/src/gth/gthchain.o obj/src/gth/gthcluster.o obj/src/gth/gthcutoffsminimal.o obj/src/gth/gthcutoffsrelaxed.o obj/src/gth/gthcutoffsstrict.o obj/src/gth/gthmatch.o obj/src/gth/gthorf.o obj/src/gth/gthoutput.o obj/src/gth/gthsadistri.o obj/src/gth/gthsortags.o obj/src/gth/gthsplicesitescr.o obj/src/gth/gthtrans.o obj/src/gth/gthtravalign.o obj/src/gth/gthverbosefunc.o obj/src/gth/gthverbosefuncvm.o obj/src/gth/gthxml.o obj/src/gth/indent.o obj/src/gth/input.o obj/src/gth/intermediate.o obj/src/gth/md5_cache.o obj/src/gth/parse_options.o obj/src/gth/path_matrix.o obj/src/gth/path_walker.o obj/src/gth/pgl.o obj/src/gth/pgl_collection.o obj/src/gth/pgl_visitor.o obj/src/gth/proc_sa_collection.o obj/src/gth/region_factory.o obj/src/gth/run_header.o obj/src/gth/sa.o obj/src/gth/sa_cmp.o obj/src/gth/sa_collection.o obj/src/gth/sa_filter.o obj/src/gth/sa_visitor.o obj/src/gth/seq_con.o obj/src/gth/similarity_filter.o obj/src/gth/splice_site_model.o obj/src/gth/spliced_seq.o obj/src/gth/stat.o obj/src/gth/time.o obj/src/gth/txt_pgl_visitor.o obj/src/gth/txt_sa_visitor.o obj/src/gth/xml_final_sa_visitor.o obj/src/gth/xml_inter_sa_visitor.o obj/src/gth/xml_pgl_visitor.o obj/src/ltr/gt_ltrclustering.o obj/src/ltr/gt_ltrdigest.o obj/src/ltr/gt_ltrharvest.o obj/src/ltr/ltr_classify_stream.o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o obj/src/ltr/ltr_cluster_stream.o obj/src/ltr/ltr_four_char_motif.o obj/src/ltr/ltr_input_check_visitor.o obj/src/ltr/ltr_orf_annotator_stream.o obj/src/ltr/ltr_refseq_match_stream.o obj/src/ltr/ltrdigest_file_out_stream.o obj/src/ltr/ltrdigest_pbs_visitor.o obj/src/ltr/ltrdigest_pdom_visitor.o obj/src/ltr/ltrdigest_ppt_visitor.o obj/src/ltr/ltrdigest_strand_assign_visitor.o obj/src/ltr/ltrharvest_fasta_out_stream.o obj/src/ltr/ltrharvest_fasta_out_visitor.o obj/src/ltr/ltrharvest_stream.o obj/src/ltr/ltrharvest_tabout_stream.o obj/src/ltr/ltrharvest_tabout_visitor.o obj/src/ltr/pdom_model_set.o obj/src/mgth/metagenomethreader.o obj/src/mgth/mg_codon.o obj/src/mgth/mg_combinedscore.o obj/src/mgth/mg_compute_gene_prediction.o obj/src/mgth/mg_computepath.o obj/src/mgth/mg_outputwriter.o obj/src/mgth/mg_reverse.o obj/src/mgth/mg_xmlparser.o obj/src/annotationsketch/block.o obj/src/annotationsketch/canvas.o obj/src/annotationsketch/canvas_cairo.o obj/src/annotationsketch/canvas_cairo_context.o obj/src/annotationsketch/canvas_cairo_file.o obj/src/annotationsketch/color.o obj/src/annotationsketch/coords.o obj/src/annotationsketch/custom_track.o obj/src/annotationsketch/custom_track_example.o obj/src/annotationsketch/custom_track_gc_content.o obj/src/annotationsketch/custom_track_script_wrapper.o obj/src/annotationsketch/diagram.o obj/src/annotationsketch/drawing_range.o obj/src/annotationsketch/element.o obj/src/annotationsketch/graphics.o obj/src/annotationsketch/graphics_cairo.o obj/src/annotationsketch/gt_sketch.o obj/src/annotationsketch/gt_sketch_page.o obj/src/annotationsketch/image_info.o obj/src/annotationsketch/layout.o obj/src/annotationsketch/line.o obj/src/annotationsketch/line_breaker.o obj/src/annotationsketch/line_breaker_bases.o obj/src/annotationsketch/line_breaker_captions.o obj/src/annotationsketch/luastyle.o obj/src/annotationsketch/rec_map.o obj/src/annotationsketch/style.o obj/src/annotationsketch/text_width_calculator.o obj/src/annotationsketch/text_width_calculator_cairo.o obj/src/annotationsketch/track.o
+ar: creating lib/libgenometools.a
+cc -c src/examples/gff3validator.c -o obj/src/examples/gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/examples/gff3validator.o
+cc -c src/examples/gff3sort.c -o obj/src/examples/gff3sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/examples/gff3sort.o
 cc -c src/examples/noop.c -o obj/src/examples/noop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/examples/noop.o
-cc -c src/examples/sketch_constructed.c -o obj/src/examples/sketch_constructed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/examples/sketch_constructed.o
 cc -c src/tools/gt_wtree_bench.c -o obj/src/tools/gt_wtree_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_wtree_bench.o
+cc -c src/examples/custom_stream.c -o obj/src/examples/custom_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/examples/custom_stream.o
 test -d lib || mkdir -p lib
-cc -c src/examples/sketch_parsed_with_ordering.c -o obj/src/examples/sketch_parsed_with_ordering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/examples/sketch_parsed_with_ordering.o
-test -d lib || mkdir -p lib
-ar r lib/libgenometools.a obj/src/core/alphabet.o obj/src/core/array.o obj/src/core/array2dim.o obj/src/core/array2dim_sparse.o obj/src/core/array3dim.o obj/src/core/basename.o obj/src/core/bioseq.o obj/src/core/bioseq_col.o obj/src/core/bioseq_iterator.o obj/src/core/bitbuffer.o obj/src/core/bitpackstringop.o obj/src/core/bitpackstringop16.o obj/src/core/bitpackstringop32.o obj/src/core/bitpackstringop64.o obj/src/core/bitpackstringop8.o obj/src/core/bittab.o obj/src/core/bool_matrix.o obj/src/core/bsearch.o obj/src/core/byte_popcount.o obj/src/core/byte_select.o obj/src/core/checkbitpackarray.o obj/src/core/checkbitpackstring-int.o obj/src/core/checkbitpackstring.o obj/src/core/checkbitpackstring16.o obj/src/core/checkbitpackstring32.o obj/src/core/checkbitpackstring64.o obj/src/core/checkbitpackstring8.o obj/src/core/class_alloc.o obj/src/core/class_alloc_lock.o obj/src/core/codon_iterator.o obj/src/core/codon_iterator_encseq.o obj/src/core/codon_iterator_simple.o obj/src/core/colorspace.o obj/src/core/combinatorics.o obj/src/core/compact_ulong_store.o obj/src/core/compat.o obj/src/core/complement.o obj/src/core/countingsort.o obj/src/core/cstr.o obj/src/core/cstr_array.o obj/src/core/cstr_table.o obj/src/core/csvline_reader.o obj/src/core/desc_buffer.o obj/src/core/disc_distri.o obj/src/core/dlist.o obj/src/core/dual-pivot-qsort.o obj/src/core/dyn_bittab.o obj/src/core/dynalloc.o obj/src/core/eansi.o obj/src/core/ebzlib.o obj/src/core/encseq.o obj/src/core/encseq_access_type.o obj/src/core/encseq_col.o obj/src/core/encseq_metadata.o obj/src/core/encseq_options.o obj/src/core/encseq_ptr.o obj/src/core/endianess.o obj/src/core/error.o obj/src/core/example.o obj/src/core/example_a.o obj/src/core/example_b.o obj/src/core/ezlib.o obj/src/core/fa.o obj/src/core/fasta.o obj/src/core/fasta_reader.o obj/src/core/fasta_reader_fsm.o obj/src/core/fasta_reader_rec.o obj/src/core/fasta_reader_seqit.o obj/src/core/fastq.o obj/src/core/file.o obj/src/core/fileutils.o obj/src/core/gc_content.o obj/src/core/grep.o obj/src/core/gtdatapath.o obj/src/core/hashmap.o obj/src/core/hashtable.o obj/src/core/init.o obj/src/core/interval_tree.o obj/src/core/io.o obj/src/core/log.o obj/src/core/logger.o obj/src/core/ma.o obj/src/core/mapspec.o obj/src/core/mathsupport.o obj/src/core/md5_encoder.o obj/src/core/md5_fingerprint.o obj/src/core/md5_seqid.o obj/src/core/md5_tab.o obj/src/core/msort.o obj/src/core/multithread.o obj/src/core/option.o obj/src/core/orf.o obj/src/core/output_file.o obj/src/core/parseutils.o obj/src/core/password_entry.o obj/src/core/phase.o obj/src/core/process.o obj/src/core/progressbar.o obj/src/core/qsort-ulong.o obj/src/core/qsort_r.o obj/src/core/quality.o obj/src/core/queue.o obj/src/core/radix_sort.o obj/src/core/range.o obj/src/core/readmode.o obj/src/core/safearith.o obj/src/core/score_function.o obj/src/core/score_matrix.o obj/src/core/seq.o obj/src/core/seq_col.o obj/src/core/seq_info_cache.o obj/src/core/seq_iterator.o obj/src/core/seq_iterator_fastq.o obj/src/core/seq_iterator_sequence_buffer.o obj/src/core/sequence_buffer.o obj/src/core/sequence_buffer_embl.o obj/src/core/sequence_buffer_fasta.o obj/src/core/sequence_buffer_fastq.o obj/src/core/sequence_buffer_gb.o obj/src/core/sequence_buffer_plain.o obj/src/core/showtime.o obj/src/core/sig.o obj/src/core/spacepeak.o obj/src/core/splitter.o obj/src/core/str.o obj/src/core/str_array.o obj/src/core/str_cache.o obj/src/core/strand.o obj/src/core/strcmp.o obj/src/core/string_distri.o obj/src/core/symbol.o obj/src/core/thread.o obj/src/core/timer.o obj/src/core/tokenizer.o obj/src/core/tool.o obj/src/core/tool_iterator.o obj/src/core/toolbox.o obj/src/core/tooldriver.o obj/src/core/trans_table.o obj/src/core/translator.o obj/src/core/unit_testing.o obj/src/core/version.o obj/src/core/versionfunc.o obj/src/core/warning.o obj/src/core/xansi.o obj/src/core/xbsd.o obj/src/core/xbzlib.o obj/src/core/xposix.o obj/src/core/xzlib.o obj/src/core/yarandom.o obj/src/extended/add_ids_stream.o obj/src/extended/add_ids_visitor.o obj/src/extended/add_introns_stream.o obj/src/extended/affinealign.o obj/src/extended/aligned_segment.o obj/src/extended/aligned_segments_pile.o obj/src/extended/alignment.o obj/src/extended/anno_db_gfflike.o obj/src/extended/anno_db_schema.o obj/src/extended/array_in_stream.o obj/src/extended/array_out_stream.o obj/src/extended/assembly_stats_calculator.o obj/src/extended/bed_in_stream.o obj/src/extended/bed_parser.o obj/src/extended/bitinstream.o obj/src/extended/bitoutstream.o obj/src/extended/blast_process_call.o obj/src/extended/buffer_stream.o obj/src/extended/cds_check_stream.o obj/src/extended/cds_check_visitor.o obj/src/extended/cds_stream.o obj/src/extended/cds_visitor.o obj/src/extended/chain.o obj/src/extended/check_boundaries_visitor.o obj/src/extended/chseqids_stream.o obj/src/extended/clustered_set.o obj/src/extended/clustered_set_uf.o obj/src/extended/coin_hmm.o obj/src/extended/collect_ids_visitor.o obj/src/extended/comment_node.o obj/src/extended/compressed_bitsequence.o obj/src/extended/condenseq.o obj/src/extended/condenseq_creator.o obj/src/extended/condenseq_search_arguments.o obj/src/extended/consensus_sa.o obj/src/extended/csa_gene.o obj/src/extended/csa_splice_form.o obj/src/extended/csa_stream.o obj/src/extended/csa_variable_strands.o obj/src/extended/csa_visitor.o obj/src/extended/cstr_iterator.o obj/src/extended/diagonalbandalign.o obj/src/extended/diagonalbandalign_affinegapcost.o obj/src/extended/dice_hmm.o obj/src/extended/dot_out_stream.o obj/src/extended/dot_visitor.o obj/src/extended/dup_feature_stream.o obj/src/extended/dup_feature_visitor.o obj/src/extended/editscript.o obj/src/extended/elias_gamma.o obj/src/extended/encdesc.o obj/src/extended/encdesc_header_io.o obj/src/extended/eof_node.o obj/src/extended/evaluator.o obj/src/extended/extract_feature_sequence.o obj/src/extended/extract_feature_stream.o obj/src/extended/extract_feature_visitor.o obj/src/extended/fasta_header_iterator.o obj/src/extended/feature_in_stream.o obj/src/extended/feature_index.o obj/src/extended/feature_index_memory.o obj/src/extended/feature_info.o obj/src/extended/feature_node.o obj/src/extended/feature_node_iterator.o obj/src/extended/feature_node_observer.o obj/src/extended/feature_out_stream.o obj/src/extended/feature_stream.o obj/src/extended/feature_visitor.o obj/src/extended/gap_str.o obj/src/extended/genome_node.o obj/src/extended/gff3_escaping.o obj/src/extended/gff3_in_stream.o obj/src/extended/gff3_in_stream_plain.o obj/src/extended/gff3_linesorted_out_stream.o obj/src/extended/gff3_numsorted_out_stream.o obj/src/extended/gff3_out_stream.o obj/src/extended/gff3_output.o obj/src/extended/gff3_parser.o obj/src/extended/gff3_visitor.o obj/src/extended/globalchaining.o obj/src/extended/golomb.o obj/src/extended/gtdatahelp.o obj/src/extended/gtf_in_stream.o obj/src/extended/gtf_out_stream.o obj/src/extended/gtf_parser.o obj/src/extended/gtf_visitor.o obj/src/extended/hcr.o obj/src/extended/hmm.o obj/src/extended/hpol_processor.o obj/src/extended/huffcode.o obj/src/extended/id_to_md5_stream.o obj/src/extended/id_to_md5_visitor.o obj/src/extended/inter_feature_stream.o obj/src/extended/inter_feature_visitor.o obj/src/extended/intset.o obj/src/extended/intset_16.o obj/src/extended/intset_32.o obj/src/extended/intset_8.o obj/src/extended/intset_combined.o obj/src/extended/io_function_pointers.o obj/src/extended/kmer_database.o obj/src/extended/linearalign.o obj/src/extended/linearalign_affinegapcost.o obj/src/extended/linspace_management.o obj/src/extended/load_stream.o obj/src/extended/luahelper.o obj/src/extended/luaserialize.o obj/src/extended/mapping.o obj/src/extended/match.o obj/src/extended/match_blast.o obj/src/extended/match_iterator.o obj/src/extended/match_iterator_blast.o obj/src/extended/match_iterator_last.o obj/src/extended/match_iterator_open.o obj/src/extended/match_iterator_sw.o obj/src/extended/match_last.o obj/src/extended/match_open.o obj/src/extended/match_sw.o obj/src/extended/match_visitor.o obj/src/extended/maxcoordvalue.o obj/src/extended/md5_to_id_stream.o obj/src/extended/md5_to_id_visitor.o obj/src/extended/md5set.o obj/src/extended/merge_feature_stream.o obj/src/extended/merge_feature_visitor.o obj/src/extended/merge_stream.o obj/src/extended/meta_node.o obj/src/extended/multi_sanitizer_visitor.o obj/src/extended/multieoplist.o obj/src/extended/mutate.o obj/src/extended/node_stream.o obj/src/extended/node_visitor.o obj/src/extended/obo_parse_tree.o obj/src/extended/obo_stanza.o obj/src/extended/orf_finder_stream.o obj/src/extended/orf_finder_visitor.o obj/src/extended/orf_iterator.o obj/src/extended/orphanage.o obj/src/extended/permute_words.o obj/src/extended/popcount_tab.o obj/src/extended/priority_queue.o obj/src/extended/ranked_list.o obj/src/extended/rbtree.o obj/src/extended/rcr.o obj/src/extended/rdb.o obj/src/extended/rdb_sqlite.o obj/src/extended/rdb_visitor.o obj/src/extended/reconstructalignment.o obj/src/extended/region_mapping.o obj/src/extended/region_node.o obj/src/extended/region_node_builder.o obj/src/extended/regioncov_visitor.o obj/src/extended/regular_seqid.o obj/src/extended/reverse.o obj/src/extended/rmq.o obj/src/extended/safe_popen.o obj/src/extended/sam_alignment.o obj/src/extended/sam_query_name_iterator.o obj/src/extended/samfile_encseq_mapping.o obj/src/extended/samfile_iterator.o obj/src/extended/sampling.o obj/src/extended/scorehandler.o obj/src/extended/script_filter.o obj/src/extended/script_wrapper_stream.o obj/src/extended/script_wrapper_visitor.o obj/src/extended/select_stream.o obj/src/extended/select_visitor.o obj/src/extended/seqid2file.o obj/src/extended/seqid2seqnum_mapping.o obj/src/extended/seqpos_classifier.o obj/src/extended/sequence_node.o obj/src/extended/sequence_node_add_stream.o obj/src/extended/sequence_node_out_stream.o obj/src/extended/sequence_node_out_visitor.o obj/src/extended/set_source_visitor.o obj/src/extended/shredder.o obj/src/extended/snp_annotator_stream.o obj/src/extended/snp_annotator_visitor.o obj/src/extended/sort_stream.o obj/src/extended/spec_results.o obj/src/extended/spec_visitor.o obj/src/extended/splice_site_info_stream.o obj/src/extended/splice_site_info_visitor.o obj/src/extended/splicedseq.o obj/src/extended/squarealign.o obj/src/extended/sspliced_alignment.o obj/src/extended/sspliced_alignment_parsing.o obj/src/extended/stat_stream.o obj/src/extended/stat_visitor.o obj/src/extended/stream_evaluator.o obj/src/extended/string_matching.o obj/src/extended/swalign.o obj/src/extended/tag_value_map.o obj/src/extended/targetbest_select_stream.o obj/src/extended/tidy_region_node_stream.o obj/src/extended/tidy_region_node_visitor.o obj/src/extended/tir_stream.o obj/src/extended/transcript_bittabs.o obj/src/extended/transcript_counts.o obj/src/extended/transcript_evaluators.o obj/src/extended/transcript_exons.o obj/src/extended/transcript_used_exons.o obj/src/extended/type_checker.o obj/src/extended/type_checker_builtin.o obj/src/extended/type_checker_obo.o obj/src/extended/type_graph.o obj/src/extended/type_node.o obj/src/extended/typecheck_info.o obj/src/extended/uint64hashtable.o obj/src/extended/union_find.o obj/src/extended/uniq_stream.o obj/src/extended/visitor_stream.o obj/src/extended/wtree.o obj/src/extended/wtree_encseq.o obj/src/extended/xrf_abbr_entry.o obj/src/extended/xrf_abbr_parse_tree.o obj/src/extended/xrf_checker.o obj/src/extended/xrfcheck_info.o obj/src/gtlua/alphabet_lua.o obj/src/gtlua/annotationsketch_lua.o obj/src/gtlua/bittab_lua.o obj/src/gtlua/canvas_lua.o obj/src/gtlua/cds_stream_lua.o obj/src/gtlua/csa_stream_lua.o obj/src/gtlua/diagram_lua.o obj/src/gtlua/encseq_lua.o obj/src/gtlua/feature_index_lua.o obj/src/gtlua/feature_node_iterator_lua.o obj/src/gtlua/feature_stream_lua.o obj/src/gtlua/feature_visitor_lua.o obj/src/gtlua/genome_node_lua.o obj/src/gtlua/genome_stream_lua.o obj/src/gtlua/genome_visitor_lua.o obj/src/gtlua/gt_lua.o obj/src/gtlua/gtcore_lua.o obj/src/gtlua/gtext_lua.o obj/src/gtlua/image_info_lua.o obj/src/gtlua/layout_lua.o obj/src/gtlua/mathsupport_lua.o obj/src/gtlua/range_lua.o obj/src/gtlua/region_mapping_lua.o obj/src/gtlua/score_matrix_lua.o obj/src/gtlua/stream_evaluator_lua.o obj/src/gtlua/translate_lua.o obj/src/match/apmeoveridx.o obj/src/match/asqg_writer.o obj/src/match/bare-encseq.o obj/src/match/bcktab.o obj/src/match/cgr_spacedseed.o obj/src/match/chain2dim.o obj/src/match/chainofin.o obj/src/match/cutendpfx.o obj/src/match/diagband-struct.o obj/src/match/diagbandseed.o obj/src/match/dist-short.o obj/src/match/echoseq.o obj/src/match/eis-blockcomp-param.o obj/src/match/eis-blockcomp.o obj/src/match/eis-bwtseq-construct.o obj/src/match/eis-bwtseq-context-param.o obj/src/match/eis-bwtseq-context.o obj/src/match/eis-bwtseq-extinfo.o obj/src/match/eis-bwtseq-param.o obj/src/match/eis-bwtseq-sass.o obj/src/match/eis-bwtseq.o obj/src/match/eis-encidxseq-construct.o obj/src/match/eis-encidxseq-param.o obj/src/match/eis-encidxseq.o obj/src/match/eis-mrangealphabet.o obj/src/match/eis-sa-common.o obj/src/match/eis-seqblocktranslate.o obj/src/match/eis-seqranges.o obj/src/match/eis-sequencemultiread.o obj/src/match/eis-specialsrank.o obj/src/match/eis-suffixarray-interface.o obj/src/match/eis-suffixerator-interface.o obj/src/match/eis-voiditf.o obj/src/match/encseq2offset.o obj/src/match/enum-patt.o obj/src/match/esa-bottomup.o obj/src/match/esa-dfs.o obj/src/match/esa-lcpintervals.o obj/src/match/esa-map.o obj/src/match/esa-maxpairs.o obj/src/match/esa-merge.o obj/src/match/esa-minunique.o obj/src/match/esa-mmsearch.o obj/src/match/esa-scanprj.o obj/src/match/esa-seqread.o obj/src/match/esa-shulen.o obj/src/match/esa-splititv-simple.o obj/src/match/esa-splititv.o obj/src/match/esa-spmitvs.o obj/src/match/esa-spmsk.o obj/src/match/esa_lcpintervals_visitor.o obj/src/match/esa_spmitvs_visitor.o obj/src/match/esa_visitor.o obj/src/match/firstcodes-accum.o obj/src/match/firstcodes-cache.o obj/src/match/firstcodes-insert.o obj/src/match/firstcodes-psbuf.o obj/src/match/firstcodes-scan.o obj/src/match/firstcodes-spacelog.o obj/src/match/firstcodes-tab.o obj/src/match/firstcodes.o obj/src/match/fmi-fwduni.o obj/src/match/fmi-keyval.o obj/src/match/fmi-locate.o obj/src/match/fmi-map.o obj/src/match/fmi-mapspec.o obj/src/match/fmi-mkindex.o obj/src/match/fmi-save.o obj/src/match/fmi-sufbwtstream.o obj/src/match/ft-eoplist.o obj/src/match/ft-front-generation.o obj/src/match/ft-front-prune.o obj/src/match/ft-polish.o obj/src/match/ft-trimstat.o obj/src/match/gfa_writer.o obj/src/match/giextract.o obj/src/match/greedyedist.o obj/src/match/greedyfwdmat.o obj/src/match/hashfirstcodes.o obj/src/match/hlk-version.o obj/src/match/hplstore.o obj/src/match/idx-limdfs.o obj/src/match/idxlocali.o obj/src/match/idxlocalidp.o obj/src/match/idxlocalisw.o obj/src/match/index_options.o obj/src/match/initbasepower.o obj/src/match/initeqsvec.o obj/src/match/iter-window.o obj/src/match/karlin_altschul_stat.o obj/src/match/kmer2string.o obj/src/match/lua_tools.o obj/src/match/marksubstring.o obj/src/match/merger-trie.o obj/src/match/mssufpat.o obj/src/match/myersapm.o obj/src/match/nullcols.o obj/src/match/optionargmode.o obj/src/match/pck-count-nodes.o obj/src/match/pckbucket.o obj/src/match/pckdfs.o obj/src/match/prsqualint.o obj/src/match/pssm.o obj/src/match/querymatch-align.o obj/src/match/querymatch-display.o obj/src/match/querymatch.o obj/src/match/radixsort_str.o obj/src/match/randomcodes-correct.o obj/src/match/randomcodes-find-seldom.o obj/src/match/randomcodes-hpcorrect.o obj/src/match/randomcodes-insert.o obj/src/match/randomcodes-sfx-partssuf.o obj/src/match/randomcodes-tab.o obj/src/match/randomcodes.o obj/src/match/rdj-cntlist.o obj/src/match/rdj-contfind-bottomup.o obj/src/match/rdj-contfinder.o obj/src/match/rdj-contigpaths.o obj/src/match/rdj-contigs-graph.o obj/src/match/rdj-contigs-writer.o obj/src/match/rdj-errfind.o obj/src/match/rdj-ovlfind-bf.o obj/src/match/rdj-ovlfind-dp.o obj/src/match/rdj-ovlfind-gusfield.o obj/src/match/rdj-ovlfind-kmp.o obj/src/match/rdj-pairwise.o obj/src/match/rdj-spmfind.o obj/src/match/rdj-spmlist.o obj/src/match/rdj-spmproc.o obj/src/match/rdj-strgraph.o obj/src/match/rdj-twobitenc-editor.o obj/src/match/rdj-version.o obj/src/match/reads2twobit.o obj/src/match/reads_libraries_table.o obj/src/match/rectangle-store.o obj/src/match/revcompl.o obj/src/match/seed-extend-iter.o obj/src/match/seed-extend.o obj/src/match/seed_extend_parts.o obj/src/match/seqabstract.o obj/src/match/seqnumrelpos.o obj/src/match/sfx-apfxlen.o obj/src/match/sfx-bentsedg.o obj/src/match/sfx-bltrie.o obj/src/match/sfx-copysort.o obj/src/match/sfx-diffcov.o obj/src/match/sfx-enumcodes.o obj/src/match/sfx-lcpvalues.o obj/src/match/sfx-linlcp.o obj/src/match/sfx-lwcheck.o obj/src/match/sfx-mappedstr.o obj/src/match/sfx-maprange.o obj/src/match/sfx-opt.o obj/src/match/sfx-outprj.o obj/src/match/sfx-partssuf.o obj/src/match/sfx-radixsort.o obj/src/match/sfx-run.o obj/src/match/sfx-sain.o obj/src/match/sfx-shortreadsort.o obj/src/match/sfx-suffixer.o obj/src/match/sfx-suffixgetset.o obj/src/match/sfx-suftaborder.o obj/src/match/shu-dfs.o obj/src/match/shu-divergence.o obj/src/match/shu-encseq-gc.o obj/src/match/shu-genomediff.o obj/src/match/shu_unitfile.o obj/src/match/spaced-seeds.o obj/src/match/specialrank.o obj/src/match/spmsuftab.o obj/src/match/squarededist.o obj/src/match/substriter.o obj/src/match/tagerator.o obj/src/match/test-mappedstr.o obj/src/match/test-maxpairs.o obj/src/match/test-mergeesa.o obj/src/match/test-mtrieins.o obj/src/match/test-pairwise.o obj/src/match/turnwheels.o obj/src/match/twobits2kmers.o obj/src/match/tyr-map.o obj/src/match/tyr-mersplit.o obj/src/match/tyr-mkindex.o obj/src/match/tyr-occratio.o obj/src/match/tyr-search.o obj/src/match/xdrop.o obj/src/gth/ags.o obj/src/gth/ags_build.o obj/src/gth/align_dna.o obj/src/gth/align_protein.o obj/src/gth/backtrace_path.o obj/src/gth/bssm_helper.o obj/src/gth/bssm_param.o obj/src/gth/bssm_param_rmsd.o obj/src/gth/bssm_seq_processor.o obj/src/gth/bssm_train_stream.o obj/src/gth/bssm_train_visitor.o obj/src/gth/call_info.o obj/src/gth/chain_collection.o obj/src/gth/chaining.o obj/src/gth/compute_scores.o obj/src/gth/desc_cache.o obj/src/gth/dp_options_core.o obj/src/gth/dp_options_est.o obj/src/gth/dp_options_postpro.o obj/src/gth/dp_param.o obj/src/gth/dp_scores_protein.o obj/src/gth/editoperation.o obj/src/gth/gff3_pgl_visitor.o obj/src/gth/gff3_sa_visitor.o obj/src/gth/gt_gth.o obj/src/gth/gt_gthbssmbuild.o obj/src/gth/gt_gthbssmfileinfo.o obj/src/gth/gt_gthbssmprint.o obj/src/gth/gt_gthbssmrmsd.o obj/src/gth/gt_gthbssmtrain.o obj/src/gth/gt_gthconsensus.o obj/src/gth/gt_gthfilestat.o obj/src/gth/gt_gthmkbssmfiles.o obj/src/gth/gt_gthsplit.o obj/src/gth/gthalignment.o obj/src/gth/gthchain.o obj/src/gth/gthcluster.o obj/src/gth/gthcutoffsminimal.o obj/src/gth/gthcutoffsrelaxed.o obj/src/gth/gthcutoffsstrict.o obj/src/gth/gthmatch.o obj/src/gth/gthorf.o obj/src/gth/gthoutput.o obj/src/gth/gthsadistri.o obj/src/gth/gthsortags.o obj/src/gth/gthsplicesitescr.o obj/src/gth/gthtrans.o obj/src/gth/gthtravalign.o obj/src/gth/gthverbosefunc.o obj/src/gth/gthverbosefuncvm.o obj/src/gth/gthxml.o obj/src/gth/indent.o obj/src/gth/input.o obj/src/gth/intermediate.o obj/src/gth/md5_cache.o obj/src/gth/parse_options.o obj/src/gth/path_matrix.o obj/src/gth/path_walker.o obj/src/gth/pgl.o obj/src/gth/pgl_collection.o obj/src/gth/pgl_visitor.o obj/src/gth/proc_sa_collection.o obj/src/gth/region_factory.o obj/src/gth/run_header.o obj/src/gth/sa.o obj/src/gth/sa_cmp.o obj/src/gth/sa_collection.o obj/src/gth/sa_filter.o obj/src/gth/sa_visitor.o obj/src/gth/seq_con.o obj/src/gth/similarity_filter.o obj/src/gth/splice_site_model.o obj/src/gth/spliced_seq.o obj/src/gth/stat.o obj/src/gth/time.o obj/src/gth/txt_pgl_visitor.o obj/src/gth/txt_sa_visitor.o obj/src/gth/xml_final_sa_visitor.o obj/src/gth/xml_inter_sa_visitor.o obj/src/gth/xml_pgl_visitor.o obj/src/ltr/gt_ltrclustering.o obj/src/ltr/gt_ltrdigest.o obj/src/ltr/gt_ltrharvest.o obj/src/ltr/ltr_classify_stream.o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o obj/src/ltr/ltr_cluster_stream.o obj/src/ltr/ltr_four_char_motif.o obj/src/ltr/ltr_input_check_visitor.o obj/src/ltr/ltr_orf_annotator_stream.o obj/src/ltr/ltr_refseq_match_stream.o obj/src/ltr/ltrdigest_file_out_stream.o obj/src/ltr/ltrdigest_pbs_visitor.o obj/src/ltr/ltrdigest_pdom_visitor.o obj/src/ltr/ltrdigest_ppt_visitor.o obj/src/ltr/ltrdigest_strand_assign_visitor.o obj/src/ltr/ltrharvest_fasta_out_stream.o obj/src/ltr/ltrharvest_fasta_out_visitor.o obj/src/ltr/ltrharvest_stream.o obj/src/ltr/ltrharvest_tabout_stream.o obj/src/ltr/ltrharvest_tabout_visitor.o obj/src/ltr/pdom_model_set.o obj/src/mgth/metagenomethreader.o obj/src/mgth/mg_codon.o obj/src/mgth/mg_combinedscore.o obj/src/mgth/mg_compute_gene_prediction.o obj/src/mgth/mg_computepath.o obj/src/mgth/mg_outputwriter.o obj/src/mgth/mg_reverse.o obj/src/mgth/mg_xmlparser.o obj/src/annotationsketch/block.o obj/src/annotationsketch/canvas.o obj/src/annotationsketch/canvas_cairo.o obj/src/annotationsketch/canvas_cairo_context.o obj/src/annotationsketch/canvas_cairo_file.o obj/src/annotationsketch/color.o obj/src/annotationsketch/coords.o obj/src/annotationsketch/custom_track.o obj/src/annotationsketch/custom_track_example.o obj/src/annotationsketch/custom_track_gc_content.o obj/src/annotationsketch/custom_track_script_wrapper.o obj/src/annotationsketch/diagram.o obj/src/annotationsketch/drawing_range.o obj/src/annotationsketch/element.o obj/src/annotationsketch/graphics.o obj/src/annotationsketch/graphics_cairo.o obj/src/annotationsketch/gt_sketch.o obj/src/annotationsketch/gt_sketch_page.o obj/src/annotationsketch/image_info.o obj/src/annotationsketch/layout.o obj/src/annotationsketch/line.o obj/src/annotationsketch/line_breaker.o obj/src/annotationsketch/line_breaker_bases.o obj/src/annotationsketch/line_breaker_captions.o obj/src/annotationsketch/luastyle.o obj/src/annotationsketch/rec_map.o obj/src/annotationsketch/style.o obj/src/annotationsketch/text_width_calculator.o obj/src/annotationsketch/text_width_calculator_cairo.o obj/src/annotationsketch/track.o
-ar: creating lib/libgenometools.a
-cc -c src/examples/sketch_parsed_with_ctrack.c -o obj/src/examples/sketch_parsed_with_ctrack.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/examples/sketch_parsed_with_ctrack.o
+cc -c src/examples/sketch_constructed.c -o obj/src/examples/sketch_constructed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/examples/sketch_constructed.o
 cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Wl,--version-script=obj/public_symbols.lst \
   -Llib  -shared \
 	-Wl,-soname,libgenometools.so.0 obj/src/core/alphabet.o obj/src/core/array.o obj/src/core/array2dim.o obj/src/core/array2dim_sparse.o obj/src/core/array3dim.o obj/src/core/basename.o obj/src/core/bioseq.o obj/src/core/bioseq_col.o obj/src/core/bioseq_iterator.o obj/src/core/bitbuffer.o obj/src/core/bitpackstringop.o obj/src/core/bitpackstringop16.o obj/src/core/bitpackstringop32.o obj/src/core/bitpackstringop64.o obj/src/core/bitpackstringop8.o obj/src/core/bittab.o obj/src/core/bool_matrix.o obj/src/core/bsearch.o obj/src/core/byte_popcount.o obj/src/core/byte_select.o obj/src/core/checkbitpackarray.o obj/src/core/checkbitpackstring-int.o obj/src/core/checkbitpackstring.o obj/src/core/checkbitpackstring16.o obj/src/core/checkbitpackstring32.o obj/src/core/checkbitpackstring64.o obj/src/core/checkbitpackstring8.o obj/src/core/class_alloc.o obj/src/core/class_alloc_lock.o obj/src/core/codon_iterator.o obj/src/core/codon_iterator_encseq.o obj/src/core/codon_iterator_simple.o obj/src/core/colorspace.o obj/src/core/combinatorics.o obj/src/core/compact_ulong_store.o obj/src/core/compat.o obj/src/core/complement.o obj/src/core/countingsort.o obj/src/core/cstr.o obj/src/core/cstr_array.o obj/src/core/cstr_table.o obj/src/core/csvline_reader.o obj/src/core/desc_buffer.o obj/src/core/disc_distri.o obj/src/core/dlist.o obj/src/core/dual-pivot-qsort.o obj/src/core/dyn_bittab.o obj/src/core/dynalloc.o obj/src/core/eansi.o obj/src/core/ebzlib.o obj/src/core/encseq.o obj/src/core/encseq_access_type.o obj/src/core/encseq_col.o obj/src/core/encseq_metadata.o obj/src/core/encseq_options.o obj/src/core/encseq_ptr.o obj/src/core/endianess.o obj/src/core/error.o obj/src/core/example.o obj/src/core/example_a.o obj/src/core/example_b.o obj/src/core/ezlib.o obj/src/core/fa.o obj/src/core/fasta.o obj/src/core/fasta_reader.o obj/src/core/fasta_reader_fsm.o obj/src/core/fasta_reader_rec.o obj/src/core/fasta_reader_seqit.o obj/src/core/fastq.o obj/src/core/file.o obj/src/core/fileutils.o obj/src/core/gc_content.o obj/src/core/grep.o obj/src/core/gtdatapath.o obj/src/core/hashmap.o obj/src/core/hashtable.o obj/src/core/init.o obj/src/core/interval_tree.o obj/src/core/io.o obj/src/core/log.o obj/src/core/logger.o obj/src/core/ma.o obj/src/core/mapspec.o obj/src/core/mathsupport.o obj/src/core/md5_encoder.o obj/src/core/md5_fingerprint.o obj/src/core/md5_seqid.o obj/src/core/md5_tab.o obj/src/core/msort.o obj/src/core/multithread.o obj/src/core/option.o obj/src/core/orf.o obj/src/core/output_file.o obj/src/core/parseutils.o obj/src/core/password_entry.o obj/src/core/phase.o obj/src/core/process.o obj/src/core/progressbar.o obj/src/core/qsort-ulong.o obj/src/core/qsort_r.o obj/src/core/quality.o obj/src/core/queue.o obj/src/core/radix_sort.o obj/src/core/range.o obj/src/core/readmode.o obj/src/core/safearith.o obj/src/core/score_function.o obj/src/core/score_matrix.o obj/src/core/seq.o obj/src/core/seq_col.o obj/src/core/seq_info_cache.o 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obj/src/extended/match_iterator_sw.o obj/src/extended/match_last.o obj/src/extended/match_open.o obj/src/extended/match_sw.o obj/src/extended/match_visitor.o obj/src/extended/maxcoordvalue.o obj/src/extended/md5_to_id_stream.o obj/src/extended/md5_to_id_visitor.o obj/src/extended/md5set.o obj/src/extended/merge_feature_stream.o obj/src/extended/merge_feature_visitor.o obj/src/extended/merge_stream.o obj/src/extended/meta_node.o obj/src/extended/multi_sanitizer_visitor.o obj/src/extended/multieoplist.o obj/src/extended/mutate.o obj/src/extended/node_stream.o obj/src/extended/node_visitor.o obj/src/extended/obo_parse_tree.o obj/src/extended/obo_stanza.o obj/src/extended/orf_finder_stream.o obj/src/extended/orf_finder_visitor.o obj/src/extended/orf_iterator.o obj/src/extended/orphanage.o obj/src/extended/permute_words.o obj/src/extended/popcount_tab.o obj/src/extended/priority_queue.o obj/src/extended/ranked_list.o obj/src/extended/rbtree.o obj/src/extended/rcr.o obj/src/extended/rdb.o obj/src/extended/rdb_sqlite.o obj/src/extended/rdb_visitor.o obj/src/extended/reconstructalignment.o obj/src/extended/region_mapping.o obj/src/extended/region_node.o obj/src/extended/region_node_builder.o obj/src/extended/regioncov_visitor.o obj/src/extended/regular_seqid.o obj/src/extended/reverse.o obj/src/extended/rmq.o obj/src/extended/safe_popen.o obj/src/extended/sam_alignment.o obj/src/extended/sam_query_name_iterator.o obj/src/extended/samfile_encseq_mapping.o obj/src/extended/samfile_iterator.o obj/src/extended/sampling.o obj/src/extended/scorehandler.o obj/src/extended/script_filter.o obj/src/extended/script_wrapper_stream.o obj/src/extended/script_wrapper_visitor.o obj/src/extended/select_stream.o obj/src/extended/select_visitor.o obj/src/extended/seqid2file.o obj/src/extended/seqid2seqnum_mapping.o obj/src/extended/seqpos_classifier.o obj/src/extended/sequence_node.o obj/src/extended/sequence_node_add_stream.o obj/src/extended/sequence_node_out_stream.o obj/src/extended/sequence_node_out_visitor.o obj/src/extended/set_source_visitor.o obj/src/extended/shredder.o obj/src/extended/snp_annotator_stream.o obj/src/extended/snp_annotator_visitor.o obj/src/extended/sort_stream.o obj/src/extended/spec_results.o obj/src/extended/spec_visitor.o obj/src/extended/splice_site_info_stream.o obj/src/extended/splice_site_info_visitor.o obj/src/extended/splicedseq.o obj/src/extended/squarealign.o obj/src/extended/sspliced_alignment.o obj/src/extended/sspliced_alignment_parsing.o obj/src/extended/stat_stream.o obj/src/extended/stat_visitor.o obj/src/extended/stream_evaluator.o obj/src/extended/string_matching.o obj/src/extended/swalign.o obj/src/extended/tag_value_map.o obj/src/extended/targetbest_select_stream.o obj/src/extended/tidy_region_node_stream.o obj/src/extended/tidy_region_node_visitor.o obj/src/extended/tir_stream.o obj/src/extended/transcript_bittabs.o obj/src/extended/transcript_counts.o obj/src/extended/transcript_evaluators.o obj/src/extended/transcript_exons.o obj/src/extended/transcript_used_exons.o obj/src/extended/type_checker.o obj/src/extended/type_checker_builtin.o obj/src/extended/type_checker_obo.o obj/src/extended/type_graph.o obj/src/extended/type_node.o obj/src/extended/typecheck_info.o obj/src/extended/uint64hashtable.o obj/src/extended/union_find.o obj/src/extended/uniq_stream.o obj/src/extended/visitor_stream.o obj/src/extended/wtree.o obj/src/extended/wtree_encseq.o obj/src/extended/xrf_abbr_entry.o obj/src/extended/xrf_abbr_parse_tree.o obj/src/extended/xrf_checker.o obj/src/extended/xrfcheck_info.o obj/src/gtlua/alphabet_lua.o obj/src/gtlua/annotationsketch_lua.o obj/src/gtlua/bittab_lua.o obj/src/gtlua/canvas_lua.o obj/src/gtlua/cds_stream_lua.o obj/src/gtlua/csa_stream_lua.o obj/src/gtlua/diagram_lua.o obj/src/gtlua/encseq_lua.o obj/src/gtlua/feature_index_lua.o obj/src/gtlua/feature_node_iterator_lua.o obj/src/gtlua/feature_stream_lua.o obj/src/gtlua/feature_visitor_lua.o obj/src/gtlua/genome_node_lua.o obj/src/gtlua/genome_stream_lua.o obj/src/gtlua/genome_visitor_lua.o obj/src/gtlua/gt_lua.o obj/src/gtlua/gtcore_lua.o obj/src/gtlua/gtext_lua.o obj/src/gtlua/image_info_lua.o obj/src/gtlua/layout_lua.o obj/src/gtlua/mathsupport_lua.o obj/src/gtlua/range_lua.o obj/src/gtlua/region_mapping_lua.o obj/src/gtlua/score_matrix_lua.o obj/src/gtlua/stream_evaluator_lua.o obj/src/gtlua/translate_lua.o obj/src/match/apmeoveridx.o obj/src/match/asqg_writer.o obj/src/match/bare-encseq.o obj/src/match/bcktab.o obj/src/match/cgr_spacedseed.o obj/src/match/chain2dim.o obj/src/match/chainofin.o obj/src/match/cutendpfx.o obj/src/match/diagband-struct.o obj/src/match/diagbandseed.o obj/src/match/dist-short.o obj/src/match/echoseq.o obj/src/match/eis-blockcomp-param.o obj/src/match/eis-blockcomp.o obj/src/match/eis-bwtseq-construct.o obj/src/match/eis-bwtseq-context-param.o obj/src/match/eis-bwtseq-context.o obj/src/match/eis-bwtseq-extinfo.o obj/src/match/eis-bwtseq-param.o obj/src/match/eis-bwtseq-sass.o obj/src/match/eis-bwtseq.o obj/src/match/eis-encidxseq-construct.o obj/src/match/eis-encidxseq-param.o obj/src/match/eis-encidxseq.o obj/src/match/eis-mrangealphabet.o obj/src/match/eis-sa-common.o obj/src/match/eis-seqblocktranslate.o obj/src/match/eis-seqranges.o obj/src/match/eis-sequencemultiread.o obj/src/match/eis-specialsrank.o obj/src/match/eis-suffixarray-interface.o obj/src/match/eis-suffixerator-interface.o obj/src/match/eis-voiditf.o obj/src/match/encseq2offset.o obj/src/match/enum-patt.o obj/src/match/esa-bottomup.o obj/src/match/esa-dfs.o obj/src/match/esa-lcpintervals.o obj/src/match/esa-map.o obj/src/match/esa-maxpairs.o obj/src/match/esa-merge.o obj/src/match/esa-minunique.o obj/src/match/esa-mmsearch.o obj/src/match/esa-scanprj.o obj/src/match/esa-seqread.o obj/src/match/esa-shulen.o obj/src/match/esa-splititv-simple.o obj/src/match/esa-splititv.o obj/src/match/esa-spmitvs.o obj/src/match/esa-spmsk.o obj/src/match/esa_lcpintervals_visitor.o obj/src/match/esa_spmitvs_visitor.o obj/src/match/esa_visitor.o obj/src/match/firstcodes-accum.o obj/src/match/firstcodes-cache.o obj/src/match/firstcodes-insert.o obj/src/match/firstcodes-psbuf.o obj/src/match/firstcodes-scan.o obj/src/match/firstcodes-spacelog.o obj/src/match/firstcodes-tab.o obj/src/match/firstcodes.o obj/src/match/fmi-fwduni.o obj/src/match/fmi-keyval.o obj/src/match/fmi-locate.o obj/src/match/fmi-map.o obj/src/match/fmi-mapspec.o obj/src/match/fmi-mkindex.o obj/src/match/fmi-save.o obj/src/match/fmi-sufbwtstream.o obj/src/match/ft-eoplist.o obj/src/match/ft-front-generation.o obj/src/match/ft-front-prune.o obj/src/match/ft-polish.o obj/src/match/ft-trimstat.o obj/src/match/gfa_writer.o obj/src/match/giextract.o obj/src/match/greedyedist.o obj/src/match/greedyfwdmat.o obj/src/match/hashfirstcodes.o obj/src/match/hlk-version.o obj/src/match/hplstore.o obj/src/match/idx-limdfs.o obj/src/match/idxlocali.o obj/src/match/idxlocalidp.o obj/src/match/idxlocalisw.o obj/src/match/index_options.o obj/src/match/initbasepower.o obj/src/match/initeqsvec.o obj/src/match/iter-window.o obj/src/match/karlin_altschul_stat.o obj/src/match/kmer2string.o obj/src/match/lua_tools.o obj/src/match/marksubstring.o obj/src/match/merger-trie.o obj/src/match/mssufpat.o obj/src/match/myersapm.o obj/src/match/nullcols.o obj/src/match/optionargmode.o obj/src/match/pck-count-nodes.o obj/src/match/pckbucket.o obj/src/match/pckdfs.o obj/src/match/prsqualint.o obj/src/match/pssm.o obj/src/match/querymatch-align.o obj/src/match/querymatch-display.o obj/src/match/querymatch.o obj/src/match/radixsort_str.o obj/src/match/randomcodes-correct.o obj/src/match/randomcodes-find-seldom.o obj/src/match/randomcodes-hpcorrect.o obj/src/match/randomcodes-insert.o obj/src/match/randomcodes-sfx-partssuf.o obj/src/match/randomcodes-tab.o obj/src/match/randomcodes.o obj/src/match/rdj-cntlist.o obj/src/match/rdj-contfind-bottomup.o obj/src/match/rdj-contfinder.o obj/src/match/rdj-contigpaths.o obj/src/match/rdj-contigs-graph.o obj/src/match/rdj-contigs-writer.o obj/src/match/rdj-errfind.o obj/src/match/rdj-ovlfind-bf.o obj/src/match/rdj-ovlfind-dp.o obj/src/match/rdj-ovlfind-gusfield.o obj/src/match/rdj-ovlfind-kmp.o obj/src/match/rdj-pairwise.o obj/src/match/rdj-spmfind.o obj/src/match/rdj-spmlist.o obj/src/match/rdj-spmproc.o obj/src/match/rdj-strgraph.o obj/src/match/rdj-twobitenc-editor.o obj/src/match/rdj-version.o obj/src/match/reads2twobit.o obj/src/match/reads_libraries_table.o obj/src/match/rectangle-store.o obj/src/match/revcompl.o obj/src/match/seed-extend-iter.o obj/src/match/seed-extend.o obj/src/match/seed_extend_parts.o obj/src/match/seqabstract.o obj/src/match/seqnumrelpos.o obj/src/match/sfx-apfxlen.o obj/src/match/sfx-bentsedg.o obj/src/match/sfx-bltrie.o obj/src/match/sfx-copysort.o obj/src/match/sfx-diffcov.o obj/src/match/sfx-enumcodes.o obj/src/match/sfx-lcpvalues.o obj/src/match/sfx-linlcp.o obj/src/match/sfx-lwcheck.o obj/src/match/sfx-mappedstr.o obj/src/match/sfx-maprange.o obj/src/match/sfx-opt.o obj/src/match/sfx-outprj.o obj/src/match/sfx-partssuf.o obj/src/match/sfx-radixsort.o obj/src/match/sfx-run.o obj/src/match/sfx-sain.o obj/src/match/sfx-shortreadsort.o obj/src/match/sfx-suffixer.o obj/src/match/sfx-suffixgetset.o obj/src/match/sfx-suftaborder.o obj/src/match/shu-dfs.o obj/src/match/shu-divergence.o obj/src/match/shu-encseq-gc.o obj/src/match/shu-genomediff.o obj/src/match/shu_unitfile.o obj/src/match/spaced-seeds.o obj/src/match/specialrank.o obj/src/match/spmsuftab.o obj/src/match/squarededist.o obj/src/match/substriter.o obj/src/match/tagerator.o obj/src/match/test-mappedstr.o obj/src/match/test-maxpairs.o obj/src/match/test-mergeesa.o obj/src/match/test-mtrieins.o obj/src/match/test-pairwise.o obj/src/match/turnwheels.o obj/src/match/twobits2kmers.o obj/src/match/tyr-map.o obj/src/match/tyr-mersplit.o obj/src/match/tyr-mkindex.o obj/src/match/tyr-occratio.o obj/src/match/tyr-search.o obj/src/match/xdrop.o obj/src/gth/ags.o obj/src/gth/ags_build.o obj/src/gth/align_dna.o obj/src/gth/align_protein.o obj/src/gth/backtrace_path.o obj/src/gth/bssm_helper.o obj/src/gth/bssm_param.o obj/src/gth/bssm_param_rmsd.o obj/src/gth/bssm_seq_processor.o obj/src/gth/bssm_train_stream.o obj/src/gth/bssm_train_visitor.o obj/src/gth/call_info.o obj/src/gth/chain_collection.o obj/src/gth/chaining.o obj/src/gth/compute_scores.o obj/src/gth/desc_cache.o obj/src/gth/dp_options_core.o obj/src/gth/dp_options_est.o obj/src/gth/dp_options_postpro.o obj/src/gth/dp_param.o obj/src/gth/dp_scores_protein.o obj/src/gth/editoperation.o obj/src/gth/gff3_pgl_visitor.o obj/src/gth/gff3_sa_visitor.o obj/src/gth/gt_gth.o obj/src/gth/gt_gthbssmbuild.o obj/src/gth/gt_gthbssmfileinfo.o obj/src/gth/gt_gthbssmprint.o obj/src/gth/gt_gthbssmrmsd.o obj/src/gth/gt_gthbssmtrain.o obj/src/gth/gt_gthconsensus.o obj/src/gth/gt_gthfilestat.o obj/src/gth/gt_gthmkbssmfiles.o obj/src/gth/gt_gthsplit.o obj/src/gth/gthalignment.o obj/src/gth/gthchain.o obj/src/gth/gthcluster.o obj/src/gth/gthcutoffsminimal.o obj/src/gth/gthcutoffsrelaxed.o obj/src/gth/gthcutoffsstrict.o obj/src/gth/gthmatch.o obj/src/gth/gthorf.o obj/src/gth/gthoutput.o obj/src/gth/gthsadistri.o obj/src/gth/gthsortags.o obj/src/gth/gthsplicesitescr.o obj/src/gth/gthtrans.o obj/src/gth/gthtravalign.o obj/src/gth/gthverbosefunc.o obj/src/gth/gthverbosefuncvm.o obj/src/gth/gthxml.o obj/src/gth/indent.o obj/src/gth/input.o obj/src/gth/intermediate.o obj/src/gth/md5_cache.o obj/src/gth/parse_options.o obj/src/gth/path_matrix.o obj/src/gth/path_walker.o obj/src/gth/pgl.o obj/src/gth/pgl_collection.o obj/src/gth/pgl_visitor.o obj/src/gth/proc_sa_collection.o obj/src/gth/region_factory.o obj/src/gth/run_header.o obj/src/gth/sa.o obj/src/gth/sa_cmp.o obj/src/gth/sa_collection.o obj/src/gth/sa_filter.o obj/src/gth/sa_visitor.o obj/src/gth/seq_con.o obj/src/gth/similarity_filter.o obj/src/gth/splice_site_model.o obj/src/gth/spliced_seq.o obj/src/gth/stat.o obj/src/gth/time.o obj/src/gth/txt_pgl_visitor.o obj/src/gth/txt_sa_visitor.o obj/src/gth/xml_final_sa_visitor.o obj/src/gth/xml_inter_sa_visitor.o obj/src/gth/xml_pgl_visitor.o obj/src/ltr/gt_ltrclustering.o obj/src/ltr/gt_ltrdigest.o obj/src/ltr/gt_ltrharvest.o obj/src/ltr/ltr_classify_stream.o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o obj/src/ltr/ltr_cluster_stream.o obj/src/ltr/ltr_four_char_motif.o obj/src/ltr/ltr_input_check_visitor.o obj/src/ltr/ltr_orf_annotator_stream.o obj/src/ltr/ltr_refseq_match_stream.o obj/src/ltr/ltrdigest_file_out_stream.o obj/src/ltr/ltrdigest_pbs_visitor.o obj/src/ltr/ltrdigest_pdom_visitor.o obj/src/ltr/ltrdigest_ppt_visitor.o obj/src/ltr/ltrdigest_strand_assign_visitor.o obj/src/ltr/ltrharvest_fasta_out_stream.o obj/src/ltr/ltrharvest_fasta_out_visitor.o obj/src/ltr/ltrharvest_stream.o obj/src/ltr/ltrharvest_tabout_stream.o obj/src/ltr/ltrharvest_tabout_visitor.o obj/src/ltr/pdom_model_set.o obj/src/mgth/metagenomethreader.o obj/src/mgth/mg_codon.o obj/src/mgth/mg_combinedscore.o obj/src/mgth/mg_compute_gene_prediction.o obj/src/mgth/mg_computepath.o obj/src/mgth/mg_outputwriter.o obj/src/mgth/mg_reverse.o obj/src/mgth/mg_xmlparser.o obj/src/annotationsketch/block.o obj/src/annotationsketch/canvas.o obj/src/annotationsketch/canvas_cairo.o obj/src/annotationsketch/canvas_cairo_context.o obj/src/annotationsketch/canvas_cairo_file.o obj/src/annotationsketch/color.o obj/src/annotationsketch/coords.o obj/src/annotationsketch/custom_track.o obj/src/annotationsketch/custom_track_example.o obj/src/annotationsketch/custom_track_gc_content.o obj/src/annotationsketch/custom_track_script_wrapper.o obj/src/annotationsketch/diagram.o obj/src/annotationsketch/drawing_range.o obj/src/annotationsketch/element.o obj/src/annotationsketch/graphics.o obj/src/annotationsketch/graphics_cairo.o obj/src/annotationsketch/gt_sketch.o obj/src/annotationsketch/gt_sketch_page.o obj/src/annotationsketch/image_info.o obj/src/annotationsketch/layout.o obj/src/annotationsketch/line.o obj/src/annotationsketch/line_breaker.o obj/src/annotationsketch/line_breaker_bases.o obj/src/annotationsketch/line_breaker_captions.o obj/src/annotationsketch/luastyle.o obj/src/annotationsketch/rec_map.o obj/src/annotationsketch/style.o obj/src/annotationsketch/text_width_calculator.o obj/src/annotationsketch/text_width_calculator_cairo.o obj/src/annotationsketch/track.o \
 	-o lib/libgenometools.so.0 -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 /usr/lib/libbam.a
+cc -c src/examples/sketch_parsed_with_ctrack.c -o obj/src/examples/sketch_parsed_with_ctrack.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/examples/sketch_parsed_with_ctrack.o
+cc -c src/examples/sketch_parsed_with_ordering.c -o obj/src/examples/sketch_parsed_with_ordering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/examples/sketch_parsed_with_ordering.o
+cc -c src/tools/gt_tallymer.c -o obj/src/tools/gt_tallymer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_tallymer.o
 cc -c src/examples/sketch_parsed.c -o obj/src/examples/sketch_parsed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/examples/sketch_parsed.o
-cc -c src/tools/gt_sfxmap.c -o obj/src/tools/gt_sfxmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_sfxmap.o
 test -d bin/examples || mkdir -p bin/examples
-cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/custom_stream.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/examples/custom_stream
 test -d bin/examples || mkdir -p bin/examples
-cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/gff3sort.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/examples/gff3sort
 test -d bin/examples || mkdir -p bin/examples
-cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/gff3validator.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/examples/gff3validator
 test -d bin/examples || mkdir -p bin/examples
-cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/noop.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/examples/noop
 test -d bin/examples || mkdir -p bin/examples
-cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/sketch_constructed.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/examples/sketch_constructed
 test -d bin/examples || mkdir -p bin/examples
-cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/sketch_parsed_with_ctrack.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/examples/sketch_parsed_with_ctrack
 test -d bin/examples || mkdir -p bin/examples
-cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/sketch_parsed_with_ordering.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/examples/sketch_parsed_with_ordering
-cc -c src/tools/gt_sortbench.c -o obj/src/tools/gt_sortbench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_sortbench.o
 test -d bin/examples || mkdir -p bin/examples
+cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/custom_stream.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/examples/custom_stream
+cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/gff3sort.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/examples/gff3sort
 cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/sketch_parsed.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/examples/sketch_parsed
+cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/noop.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/examples/noop
+cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/gff3validator.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/examples/gff3validator
+cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/sketch_constructed.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/examples/sketch_constructed
+cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/sketch_parsed_with_ctrack.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/examples/sketch_parsed_with_ctrack
+cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/sketch_parsed_with_ordering.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/examples/sketch_parsed_with_ordering
+cc -c src/tools/gt_sfxmap.c -o obj/src/tools/gt_sfxmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_sfxmap.o
+cc -c src/tools/gt_sortbench.c -o obj/src/tools/gt_sortbench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -MM -MP -MT obj/src/tools/gt_sortbench.o
 test -d bin || mkdir -p bin
 cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/gt.o obj/src/gtr.o obj/src/gtt.o obj/src/interactive.o obj/src/tools/gt_bed_to_gff3.o obj/src/tools/gt_cds.o obj/src/tools/gt_chain2dim.o obj/src/tools/gt_chseqids.o obj/src/tools/gt_clean.o obj/src/tools/gt_compreads.o obj/src/tools/gt_compreads_compress.o obj/src/tools/gt_compreads_decompress.o obj/src/tools/gt_compreads_refcompress.o obj/src/tools/gt_compreads_refdecompress.o obj/src/tools/gt_compressedbits.o obj/src/tools/gt_condenseq.o obj/src/tools/gt_condenseq_blast.o obj/src/tools/gt_condenseq_compress.o obj/src/tools/gt_condenseq_extract.o obj/src/tools/gt_condenseq_hmmsearch.o obj/src/tools/gt_condenseq_info.o obj/src/tools/gt_condenseq_search.o obj/src/tools/gt_congruence.o obj/src/tools/gt_consensus_sa.o obj/src/tools/gt_convertseq.o obj/src/tools/gt_csa.o obj/src/tools/gt_dev.o obj/src/tools/gt_dot.o obj/src/tools/gt_dupfeat.o obj/src/tools/gt_encseq.o obj/src/tools/gt_encseq2spm.o obj/src/tools/gt_encseq_bench.o obj/src/tools/gt_encseq_bitextract.o obj/src/tools/gt_encseq_check.o obj/src/tools/gt_encseq_decode.o obj/src/tools/gt_encseq_encode.o obj/src/tools/gt_encseq_info.o obj/src/tools/gt_encseq_md5.o obj/src/tools/gt_encseq_sample.o obj/src/tools/gt_eval.o obj/src/tools/gt_extractfeat.o obj/src/tools/gt_extractseq.o obj/src/tools/gt_extracttarget.o obj/src/tools/gt_fastq_sample.o obj/src/tools/gt_featureindex.o obj/src/tools/gt_fingerprint.o obj/src/tools/gt_gdiffcalc.o obj/src/tools/gt_genomediff.o obj/src/tools/gt_gff3.o obj/src/tools/gt_gff3_to_gtf.o obj/src/tools/gt_gff3validator.o obj/src/tools/gt_gtf_to_gff3.o obj/src/tools/gt_guessprot.o obj/src/tools/gt_hop.o obj/src/tools/gt_id_to_md5.o obj/src/tools/gt_idxlocali.o obj/src/tools/gt_inlineseq_add.o obj/src/tools/gt_inlineseq_split.o obj/src/tools/gt_interfeat.o obj/src/tools/gt_kmer_database.o obj/src/tools/gt_linspace_align.o obj/src/tools/gt_loccheck.o obj/src/tools/gt_magicmatch.o obj/src/tools/gt_matchtool.o obj/src/tools/gt_matstat.o obj/src/tools/gt_md5_to_id.o obj/src/tools/gt_merge.o obj/src/tools/gt_mergeesa.o obj/src/tools/gt_mergefeat.o obj/src/tools/gt_mgth.o obj/src/tools/gt_mkfeatureindex.o obj/src/tools/gt_mkfmindex.o obj/src/tools/gt_mmapandread.o obj/src/tools/gt_orffinder.o obj/src/tools/gt_packedindex.o obj/src/tools/gt_packedindex_chk_integrity.o obj/src/tools/gt_packedindex_chk_search.o obj/src/tools/gt_packedindex_mkctxmap.o obj/src/tools/gt_packedindex_trsuftab.o obj/src/tools/gt_paircmp.o obj/src/tools/gt_parsexrf.o obj/src/tools/gt_patternmatch.o obj/src/tools/gt_prebwt.o obj/src/tools/gt_readjoiner.o obj/src/tools/gt_readjoiner_asqg.o obj/src/tools/gt_readjoiner_assembly.o obj/src/tools/gt_readjoiner_cgraph.o obj/src/tools/gt_readjoiner_cnttest.o obj/src/tools/gt_readjoiner_correct.o obj/src/tools/gt_readjoiner_gfa.o obj/src/tools/gt_readjoiner_graph.o obj/src/tools/gt_readjoiner_overlap.o obj/src/tools/gt_readjoiner_prefilter.o obj/src/tools/gt_readjoiner_spmtest.o obj/src/tools/gt_readreads.o obj/src/tools/gt_regioncov.o obj/src/tools/gt_repfind.o obj/src/tools/gt_sain.o obj/src/tools/gt_sam_interface.o obj/src/tools/gt_script_filter.o obj/src/tools/gt_seed_extend.o obj/src/tools/gt_select.o obj/src/tools/gt_seq.o obj/src/tools/gt_seqcorrect.o obj/src/tools/gt_seqfilter.o obj/src/tools/gt_seqids.o obj/src/tools/gt_seqlensort.o obj/src/tools/gt_seqmutate.o obj/src/tools/gt_seqorder.o obj/src/tools/gt_seqstat.o obj/src/tools/gt_seqtransform.o obj/src/tools/gt_seqtranslate.o obj/src/tools/gt_sequniq.o obj/src/tools/gt_sfxmap.o obj/src/tools/gt_show_seedext.o obj/src/tools/gt_shredder.o obj/src/tools/gt_shulen.o obj/src/tools/gt_simreads.o obj/src/tools/gt_skproto.o obj/src/tools/gt_snpper.o obj/src/tools/gt_sortbench.o obj/src/tools/gt_speck.o obj/src/tools/gt_splicesiteinfo.o obj/src/tools/gt_splitfasta.o obj/src/tools/gt_stat.o obj/src/tools/gt_suffixerator.o obj/src/tools/gt_tagerator.o obj/src/tools/gt_tallymer.o obj/src/tools/gt_template.o obj/src/tools/gt_tir.o obj/src/tools/gt_trieins.o obj/src/tools/gt_uniq.o obj/src/tools/gt_wtree.o obj/src/tools/gt_wtree_bench.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3   -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3 -o bin/gt
 bin/gt gtscripts/gtdoc.lua -html . \
@@ -7370,36 +7405,56 @@
 pdflatex readjoiner.tex && rm readjoiner.pdf
 test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux
 test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux
+test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux
 make[3]: [Makefile:39: hop-pdf.aux] Error 1 (ignored)
 pdflatex hop.tex && rm hop.pdf
 make[3]: [Makefile:40: ltrharvest-pdf.aux] Error 1 (ignored)
 pdflatex ltrharvest.tex && rm ltrharvest.pdf
 make[3]: [Makefile:40: ltrdigest-pdf.aux] Error 1 (ignored)
 pdflatex ltrdigest.tex && rm ltrdigest.pdf
-test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux
+test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux
 make[3]: [Makefile:39: uniquesub-pdf.aux] Error 1 (ignored)
 pdflatex uniquesub.tex && rm uniquesub.pdf
 make[3]: [Makefile:40: matstat-pdf.aux] Error 1 (ignored)
 pdflatex matstat.tex && rm matstat.pdf
 make[3]: [Makefile:40: mgth-pdf.aux] Error 1 (ignored)
 pdflatex mgth.tex && rm mgth.pdf
-test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux
 test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux
 make[3]: [Makefile:39: packedindex-pdf.aux] Error 1 (ignored)
 pdflatex packedindex.tex && rm packedindex.pdf
-make[3]: [Makefile:40: repfind-pdf.aux] Error 1 (ignored)
-pdflatex repfind.tex && rm repfind.pdf
 head -n 6999 ../../testdata/at1MB > read1.fna
 echo ">" > read2.fna
-tail -n 6945 ../../testdata/at1MB >> read2.fna
+make[3]: [Makefile:40: repfind-pdf.aux] Error 1 (ignored)
+pdflatex repfind.tex && rm repfind.pdf
 cp ../../testdata/U89959_genomic.fas U89959.fna
 ../../bin/gt packedindex mkindex -dna -dir rev -parts 12 -bsize 10 \
                       -sprank -locfreq 32 -tis -ssp -indexname pck-human\
                       -db ../../testdata/at1MB
 cp ../../testdata/Q1.gz Q1.gz
+tail -n 6945 ../../testdata/at1MB >> read2.fna
 test -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux
 make[3]: [Makefile:39: genomediff-pdf.aux] Error 1 (ignored)
 pdflatex genomediff.tex && rm genomediff.pdf
+./findemptyoutfiles.sh
+./execcommand.pl tallymer.tex > tallymer-tmp.tex
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+# file output/gt-tallymer-occratio--output-unique-nonunique--mersizes-10-13-17--esa-reads.out already exists
+# file output/gt-tallymer-mkindex--mersize-19--minocc-40--esa-reads.out already exists
+# file output/gt-tallymer-mkindex--mersize-19--minocc-4--indexname-tyr-reads--counts--pl--esa-reads.out already exists
+# file output/gt-tallymer-search--output-qseqnum-qpos-counts-sequence--tyr-tyr-reads--q-U89959.fna.out already exists
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 []\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna
  -suf -tis -lcp -ssp -pl 
-[3
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-[3]>]
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+
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+
+
+LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134.
+
+
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+
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 []\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che
 r, C., Stoye, J., Giegerich,
@@ -7803,7 +7857,11 @@
 
 LaTeX Warning: Reference `reversedEQ' on page 4 undefined on input line 200.
 
-[4>] (./repfind.aux)
+[4
+Overfull \hbox (8.18253pt too wide) in paragraph at lines 122--126
+\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu
+b / current _ fasta / homo _ sapiens _ 47 _ 36i /
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@@ -7811,194 +7869,272 @@
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  )
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 (see the transcript file for additional information){/usr/share/texlive/texmf-d
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+at
 
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+Output written on uniquesub.pdf (3 pages, 98632 bytes).
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-[6>]</usr/share/tex
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+[]\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname
+ genome.fas 
 
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-[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR
-) l(rLTR) sim(LTRs) seq-nr[] 
+Overfull \hbox (6.71515pt too wide) in paragraph at lines 570--576
+[]\OT1/ptm/m/n/12 We will also as-sume that the HMM files to be used are called
+ \OT1/pcr/m/n/12 HMM1.hmm\OT1/ptm/m/n/12 , \OT1/pcr/m/n/12 HMM2.hmm \OT1/ptm/m/
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-\OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i-
-tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/
-12 prefix.suf
+Overfull \hbox (24.62292pt too wide) in paragraph at lines 577--587
+\OT1/pcr/m/n/12 -hmms HMM*.hmm -outfileprefix mygenome-ltrs ltrs[]sorted.gff3 g
+enome.fas
+[9] [10] (./ltrdigest.aux)
 
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- line 278.
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-[3>]
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-) l(rLTR) sim(LTRs) seq-nr[] 
 
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-) l(rLTR) sim(LTRs) seq-nr[] 
+LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
 
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-[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chr02.19970727.fsa -seed 30 -xdrop 5 -
-mat 2 -mis -2 -ins -3 
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+(see the transcript file for additional information){/usr/share/texlive/texmf-d
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+
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 >
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-[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) TSD l(TSD) m(l
-LTR) s(rLTR) e(rLTR) l(rLTR) TSD l(TSD) m(rLTR) sim(LTRs) seq-nr[] 
 
-LaTeX Warning: Citation `kim:1998' on page 9 undefined on input line 694.
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-tr 100 -maxlenltr 1000 
-[9]test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux
+LaTeX Warning: Citation `genometools' on page 1 undefined on input line 58.
 
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+[][][][][][][][][][][][][][][][][][][][][][][][] 
+No file genomediff.bbl.
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-[4./findemptyoutfiles.sh
 
+LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
 
-LaTeX Warning: Citation `vmatch' on page 10 undefined on input line 770.
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+\OT1/ptm/m/it/12 Tools \OT1/ptm/m/n/12 (see [[]] for in-stal-la-tion in-struc-t
+ions). There are two dif-fer-ent in-stal-la-tion op-tions for the \OT1/ptm/m/it
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-LaTeX Warning: Reference `parameters-cluster-default' on page 10 undefined on i
-nput line 791.
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-LaTeX Warning: Citation `vmatch' on page 10 undefined on input line 792.
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+[]\OT1/pcr/m/n/10.95 BLAST-Filename \OT1/ptm/m/n/12 de-notes the XML for-mat-te
+d BLAST-hit file, \OT1/pcr/m/n/10.95 Metagenome-Filename \OT1/ptm/m/n/12 the FA
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+exmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfbThis is BibTeX, Version 0.99d (TeX Live 2019/dev/Debian)
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+[]\OT1/ptm/m/n/12 . If this op-
 
-[10]]
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-LaTeX Warning: Citation `gttestdata' on page 5 undefined on input line 432.
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-[5
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-e an-no-ta-tion. $\OT1/pcr/m/n/12 http : / / www .
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-[11]] [12
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-[6]bibtex matstat
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-(see the transcript file for additional information){/usr/share/texlive/texmf-d
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+[]\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir
+ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq
 
+Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146
+[]\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_
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+[2]
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-\OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can
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+[5
 
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+LaTeX Warning: Citation `AKO04' on page 1 undefined on input line 57.
 
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+ [1
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+\OT1/ptm/m/n/12 The pre-fix added by HOP (in this case \OT1/pcr/m/n/12 hop\OT1/
+ptm/m/n/12 , which is the de-fault) can be changed us-ing the \OT1/pcr/m/n/12 -
+outprefix
+[3
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+[]\OT1/ptm/m/n/10.95 MLLREVTREERKNFYTNEWKVKDIPDFIVKTLELREFGFDHSGEGPSDRKNQYTDIRD
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+
+Overfull \hbox (7.99995pt too wide) in paragraph at lines 444--468
+[][] 
+
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+[]\OT1/ptm/m/n/12 Content:| 
+
+Overfull \hbox (1.15051pt too wide) in paragraph at lines 478--478
+[][]| 
 
-[1]
+Overfull \hbox (1.15051pt too wide) in paragraph at lines 480--480
+[][]| 
+
+Overfull \hbox (1.15051pt too wide) in paragraph at lines 482--482
+[][]| 
+
+Overfull \hbox (38.49402pt too wide) in paragraph at lines 504--506
+[]\OT1/ptm/m/n/12 Content:| 
+
+Overfull \hbox (1.15051pt too wide) in paragraph at lines 506--506
+[]\OT1/ptm/m/n/12 -
+
+Overfull \hbox (1.15051pt too wide) in paragraph at lines 509--509
+[]\OT1/ptm/m/n/12 -
+[6]
 
 LaTeX Warning: Citation `MYE:2005' on page 1 undefined on input line 57.
 
@@ -8013,40 +8149,19 @@
 []\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru
 n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner <tool> <argumen
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-(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd)
-Output written on ltrharvest.pdf (13 pages, 160498 bytes).
-Transcript written on ltrharvest.log.
-bibtex repfind
- [1
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-Transcript written on packedindex.log.
-bibtex hop
-}]
-
-LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120.
-
-
-LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 127.
-
-
-LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134.
-
+(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd)mv genomediff.aux genomediff-pdf.aux
+] [7 [4test -e uniquesub-pdf.bbl && mv uniquesub-pdf.bbl uniquesub.bbl
+] (./mgth.aux])test -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux
+]
 
-LaTeX Warning: Reference `overviewOpt' on page 2 undefined on input line 166.
+LaTeX Warning: There were undefined references.
 
-[2]
-Underfull \hbox (badness 4132) in paragraph at lines 185--188
-[]\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved
-[2]mv ltrharvest.aux ltrharvest-pdf.aux
-] [3] [4
 
-LaTeX Warning: Citation `MYE:2005' on page 3 undefined on input line 211.
+LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
 
-[3]
-Overfull \hbox (8.18253pt too wide) in paragraph at lines 129--133
-\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu
-b / current _ fasta / homo _ sapiens _ 47 _ 36i /
-[2]] [3] (./uniquesub.aux)
+ )
+(see the transcript file for additional information){/usr/share/texlive/texmf-d
+ist/fonts/enc/dvips/base/8r.enc (./hop.aux}) [1
 
 LaTeX Warning: There were undefined references.
 
@@ -8056,200 +8171,206 @@
  )
 (see the transcript file for additional information){/usr/share/texlive/texmf-d
 ist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/texmf-dist/fonts/type1/publ
-ic/amsfonts/cm/cmmi12.pfb
+ic/amsfonts/cm/cmmi10.pfb</usr/share/texlive/texmf-dist/fonts/type1/publ
+ic/amsfonts/cm/cmsy10.pfb [2>></usr/share/texlive/texmf-dist/fonts/type1/public/ams
+fonts/cm/cmmi12.pfb</usr/share/texlive/texmf-dist/fonts/type1/urw/courie
+r/ucrr8a.pfbpdflatex uniquesub.tex
+]]}></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
+cm/cmmi7.pfb>bibtex genomediff
+</usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr1
+2.pfb
 
-LaTeX Warning: Citation `MYE:2005' on page 4 undefined on input line 261.
+LaTeX Warning: Reference `overviewOpt' on page 1 undefined on input line 106.
 
-[4]>
-Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291
-\OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1
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-at
 
-Underfull \hbox (badness 10000) in paragraph at lines 283--291
+LaTeX Warning: Reference `Examples' on page 1 undefined on input line 205.
 
-[5</usr/share/texlive/texmf-dist/fonts/type1/public/ams
-fonts/cm/cmr12.pfb]></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
-m/cmsy10.pfb>
+[1
+Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257
+\OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i-
+tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/
+12 prefix.suf
 
-LaTeX Warning: Citation `Edena' on page 5 undefined on input line 328.
+LaTeX Warning: Reference `sec:packedindex:mkindex' on page 3 undefined on input
+ line 278.
 
-[5</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti
-12.pfbThis is BibTeX, Version 0.99d (TeX Live 2019/dev/Debian)
+[3>>
+Underfull \hbox (badness 4132) in paragraph at lines 185--188
+[]\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved
+[2]<</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb/
+usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfbThis is BibTeX, Version 0.99d (TeX Live 2019/dev/Debian)
 The top-level auxiliary file: matstat.aux
 I found no \citation commands---while reading file matstat.aux
 I found no \bibdata command---while reading file matstat.aux
 I found no \bibstyle command---while reading file matstat.aux
 (There were 3 error messages)
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-> [6</usr/share/texlive
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-ts/type1/urw/times/utmr8a.pfb [7] (./readjoiner.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd)
+]]>
+</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfbmake[3]: [Makefile:33: matstat-pdf.bbl] Error 2 (ignored)
+test -e matstat-pdf.bbl || touch matstat-pdf.bbl
 
-LaTeX Warning: There were undefined references.
 
+LaTeX Warning: Citation `MYE:2005' on page 3 undefined on input line 211.
 
-LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
+[3>></usr/share/texli
+ve/texmf-dist/fonts/type1/urw/times/utmri8a.pfb</usr/s
+hare/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb]
+(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd] [2)>]>
+Overfull \hbox (49.67761pt too wide) in paragraph at lines 170--170
+[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads
+.prj':
+[2
 
- )
-(see the transcript file for additional information){/usr/share/texlive/texmf-d
-ist/fonts/enc/dvips/base/8r.enc}></usr/share/texlive/texmf-dist/fonts/type1/publ
-ic/amsfonts/cm/cmmi12.pfb</usr/share/texlive/texmf-dist/fonts/type1/urw/ti
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-fonts/cm/cmr12.pfb>></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
-m/cmsy10.pfb [7></usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb]./execcommand.pl tallymer.tex > tallymer-tmp.tex
->
-}</usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb]make[3]: [Makefile:33: matstat-pdf.bbl] Error 2 (ignored)
-test -e matstat-pdf.bbl || touch matstat-pdf.bbl
+LaTeX Warning: Reference `sec:packedindex:examples' on page 4 undefined on inpu
+t line 310.
 
-(/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [8>test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux
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-Overfull \hbox (34.70291pt too wide) in paragraph at lines 564--565
-[]\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname
- genome.fas 
+[4</usr/share/texlive/
+texmf-dist/fonts/type1/urw/times/utmb8a.pfbdiff matstat-pdf.bbl matstat.bbl || mv matstat.bbl matstat-pdf.bbl && rm -f matstat.bbl
 
-Overfull \hbox (6.71515pt too wide) in paragraph at lines 570--576
-[]\OT1/ptm/m/n/12 We will also as-sume that the HMM files to be used are called
- \OT1/pcr/m/n/12 HMM1.hmm\OT1/ptm/m/n/12 , \OT1/pcr/m/n/12 HMM2.hmm \OT1/ptm/m/
-n/12 and \OT1/pcr/m/n/12 HMM3.hmm\OT1/ptm/m/n/12 ,
 
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-\OT1/pcr/m/n/12 -hmms HMM*.hmm -outfileprefix mygenome-ltrs ltrs[]sorted.gff3 g
-enome.fas
-[9
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-]> [10] (./ltrdigest.aux)</usr/share/texlive/texmf-dist/fonts/type1/u
-rw/times/utmri8a.pfb
+LaTeX Warning: Citation `MYE:2005' on page 4 undefined on input line 261.
 
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+[4]]]></usr/share/texlive/texmf-dist/font
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+LaTeX Warning: Citation `gttestdata' on page 5 undefined on input line 432.
 
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- )
-(see the transcript file for additional information){/usr/share/texlive/texmf-d
-ist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/texmf-dist/fonts/type1/publ
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-i6.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfbdiff matstat-pdf.bbl matstat.bbl || mv matstat.bbl matstat-pdf.bbl && rm -f matstat.bbl
-mv uniquesub.aux uniquesub-pdf.aux
-# file output/gt-suffixerator--dna--pl--tis--suf--lcp--v--parts-4--db-read1.fna-read2.fna--indexname-reads.out already exists
-# file output/gt-tallymer-occratio--output-unique-nonunique--minmersize-10--maxmersize-20--esa-reads.out already exists
-# file output/gt-tallymer-occratio--output-unique-relative--minmersize-10--maxmersize-20--esa-reads.out already exists
-# file output/gt-tallymer-occratio--output-unique-nonunique--mersizes-10-13-17--esa-reads.out already exists
->
-# file output/gt-tallymer-mkindex--mersize-19--minocc-40--esa-reads.out already exists
-# file output/gt-tallymer-mkindex--mersize-19--minocc-4--indexname-tyr-reads--counts--pl--esa-reads.out already exists
-# file output/gt-tallymer-search--output-qseqnum-qpos-counts-sequence--tyr-tyr-reads--q-U89959.fna.out already exists
-</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb>
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+[]\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n
+/12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/
+m/n/12 has been copied/linked
+[5</usr/share/texlive/texmf-dist/fonts/type1/urw/ti
+mes/utmr8a.pfb]
 
-LaTeX Warning: Citation `HAU:DOM:WIE:2008' on page 1 undefined on input line 90
-.
+LaTeX Warning: Citation `Edena' on page 5 undefined on input line 328.
+
+[5
 
+LaTeX Warning: Citation `gff3' on page 3 undefined on input line 249.
 
-LaTeX Warning: Citation `HAU:PFA:DOM:WIE:2009' on page 1 undefined on input lin
-e 90.
+[3
+No file packedindex.bbl.
+[6mv matstat.aux matstat-pdf.aux
+] (./packedindex.aux)>]
 
+LaTeX Warning: There were undefined references.
 
-LaTeX Warning: Citation `HAU:REE:PFA:2011' on page 1 undefined on input line 90
-.
 
+LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
 
-LaTeX Warning: Citation `genometools' on page 1 undefined on input line 98.
+ )
+(see the transcript file for additional information){/usr/share/texlive/texmf-d
+ist/fonts/enc/dvips/base/8r.enc}]
+
+LaTeX Warning: Reference `Examples' on page 3 undefined on input line 194.
 
-[1</usr/s
-hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb>]</usr/share/te
-xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfbThis is BibTeX, Version 0.99d (TeX Live 2019/dev/Debian)
+[3</usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb
+</usr/share/texlive/texmf-dist/fonts/type1/publ
+ic/amsfonts/cm/cmmi10.pfbThis is BibTeX, Version 0.99d (TeX Live 2019/dev/Debian)
 The top-level auxiliary file: repfind.aux
 I found no \citation commands---while reading file repfind.aux
 I found no \bibdata command---while reading file repfind.aux
 I found no \bibstyle command---while reading file repfind.aux
 (There were 3 error messages)
->bibtex ltrharvest
-</usr/share/texlive/te
-xmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfbtest -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux
-make[3]: [Makefile:32: repfind-pdf.bbl] Error 2 (ignored)
+]test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux
+>>
+Output written on hop.pdf (5 pages, 74162 bytes).
+Transcript written on hop.log.
+</usr/share/texlive/texmf-dist/fonts/type1/public/ams
+fonts/cm/cmmi12.pfbmake[3]: [Makefile:32: repfind-pdf.bbl] Error 2 (ignored)
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+></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
+cm/cmmi7.pfb [6></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi
+8.pfb
+Overfull \hbox (49.67761pt too wide) in paragraph at lines 257--257
+[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads
+.prj':
+[4test -e matstat-pdf.bbl && mv matstat-pdf.bbl matstat.bbl
+ [4]> [7]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb (./readjoiner.aux)]]
 
-Output written on readjoiner.pdf (8 pages, 109445 bytes).
-Transcript written on readjoiner.log.
-></usr/share/texlive/texmf-dist
-/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts
-/type1/public/amsfonts/cm/cmsy8.pfbpdflatex tallymer-tmp
-></usr/share/texlive/texmf-dist/fonts/type1/
-urw/courier/ucrr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utm
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-</usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb></usr/
-share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfbThis is BibTeX, Version 0.99d (TeX Live 2019/dev/Debian)
-The top-level auxiliary file: hop.aux
-I found no \bibdata command---while reading file hop.aux
-I found no \bibstyle command---while reading file hop.aux
-(There were 2 error messages)
-}>]</usr/share/texlive/t
-exmf-dist/fonts/type1/urw/times/utmri8a.pfb
-
-LaTeX Warning: Reference `tab:gdopts' on page 2 undefined on input line 165.
-
-[2
+LaTeX Warning: There were undefined references.
 
-LaTeX Warning: Citation `krause' on page 1 undefined on input line 51.
 
-(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd>)]
+LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
 
-LaTeX Warning: Citation `genometools' on page 1 undefined on input line 58.
+ )
+(see the transcript file for additional information){/usr/share/texlive/texmf-d
+ist/fonts/enc/dvips/base/8r.enc}diff repfind-pdf.bbl repfind.bbl || mv repfind.bbl repfind-pdf.bbl && rm -f repfind.bbl
+></usr/share/texlive/texmf-dist/fonts/type1/publ
+ic/amsfonts/cm/cmmi12.pfb<
+/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfbmv hop.aux hop-pdf.aux
+>></usr/share/texlive/texmf-dist/fonts/type1/public/ams
+fonts/cm/cmr12.pfb</usr/sha
+re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb [5pdflatex matstat.tex
+>>test -e hop-pdf.aux && mv hop-pdf.aux hop.aux
+</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
+m/cmsy10.pfb<]/usr/share/tex
+live/texmf-dist/fonts/type1/urw/courier/ucrb8a.pfb [5>]</usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb></usr/share/texlive/texmf-di
+st/fonts/type1/urw/courier/ucrbo8a.pfb
+Output written on mgth.pdf (8 pages, 131572 bytes).
+Transcript written on mgth.log.
+>
+mv repfind.aux repfind-pdf.aux
 
-(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fdmv readjoiner.aux readjoiner-pdf.aux
-)make[3]: [Makefile:36: hop-pdf.bbl] Error 2 (ignored)
-test -e hop-pdf.bbl || touch hop-pdf.bbl
 
+LaTeX Warning: Reference `different-options' on page 6 undefined on input line 
+493.
 
-LaTeX Warning: Reference `code:lua' on page 3 undefined on input line 241.
 
-[3]
+LaTeX Warning: Reference `Example-genome' on page 6 undefined on input line 494
+.
 
-LaTeX Warning: Citation `genometools' on page 1 undefined on input line 98.
 
+LaTeX Warning: Reference `ExampleCluster' on page 6 undefined on input line 497
+.
 
-Overfull \hbox (1.48183pt too wide) in paragraph at lines 97--108
-\OT1/ptm/m/it/12 Tools \OT1/ptm/m/n/12 (see [[]] for in-stal-la-tion in-struc-t
-ions). There are two dif-fer-ent in-stal-la-tion op-tions for the \OT1/ptm/m/it
-/12 Genome-
-[1] [4
-Output written on ltrdigest.pdf (11 pages, 185298 bytes).
-Transcript written on ltrdigest.log.
-bibtex packedindex
-]diff repfind-pdf.bbl repfind.bbl || mv repfind.bbl repfind-pdf.bbl && rm -f repfind.bbl
-test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux
 
+LaTeX Warning: Citation `vmatch' on page 6 undefined on input line 502.
 
-LaTeX Warning: Reference `overviewOpt' on page 2 undefined on input line 123.
+[6 [6></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb</usr/share/texlive/texmf-dist/fonts/typ
+e1/urw/courier/ucrr8a.pfbbibtex hop
+]]> [7></usr/share/tex
+live/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb]
+Overfull \hbox (38.30313pt too wide) in paragraph at lines 545--545
+[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR
+) l(rLTR) sim(LTRs) seq-nr[] 
 
+Overfull \hbox (32.30313pt too wide) in paragraph at lines 581--581
+[]\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi
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+[7test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux
+</usr/share/texlive/texmf-dist/fonts/type1/urw/courie
+r/ucrro8a.pfb]></usr/share/texlive/texmf-dis
+t/fonts/type1/urw/times/utmr8a.pfb [8>
+Overfull \hbox (38.30313pt too wide) in paragraph at lines 605--605
+[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR
+) l(rLTR) sim(LTRs) seq-nr[] 
 
-Overfull \hbox (0.98593pt too wide) in paragraph at lines 115--125
-[]\OT1/pcr/m/n/10.95 BLAST-Filename \OT1/ptm/m/n/12 de-notes the XML for-mat-te
-d BLAST-hit file, \OT1/pcr/m/n/10.95 Metagenome-Filename \OT1/ptm/m/n/12 the FA
-STA
-[2diff hop-pdf.bbl hop.bbl || mv hop.bbl hop-pdf.bbl && rm -f hop.bbl
-test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux
-]test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux
-bibtex readjoiner
+Overfull \hbox (38.30313pt too wide) in paragraph at lines 633--633
+[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR
+) l(rLTR) sim(LTRs) seq-nr[] 
 
-Overfull \hbox (1.2452pt too wide) in paragraph at lines 256--257
-[]\OT1/ptm/m/n/12 . If this op-
+Overfull \hbox (8.30313pt too wide) in paragraph at lines 657--657
+[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chr02.19970727.fsa -seed 30 -xdrop 5 -
+mat 2 -mis -2 -ins -3 
+[8</usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb]]mv mgth.aux mgth-pdf.aux
+>><
+/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb [9</usr/share/texlive/texmf-dist/fonts/type1/u
+rw/times/utmri8a.pfbtest -e repfind-pdf.bbl && mv repfind-pdf.bbl repfind.bbl
+]test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux
+ (./tallymer-tmp.aux
+Overfull \hbox (266.30313pt too wide) in paragraph at lines 666--666
+[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) TSD l(TSD) m(l
+LTR) s(rLTR) e(rLTR) l(rLTR) TSD l(TSD) m(rLTR) sim(LTRs) seq-nr[] 
 
-LaTeX Warning: Reference `Examples' on page 3 undefined on input line 263.
+LaTeX Warning: Citation `kim:1998' on page 9 undefined on input line 694.
 
-[3
-Overfull \hbox (35.00766pt too wide) in paragraph at lines 324--325
-[][][][][][][][][][][][][][][][][][][][][][][][] 
-No file genomediff.bbl.
-[5] (./genomediff.aux])bibtex uniquesub
 
+Overfull \hbox (14.30313pt too wide) in paragraph at lines 723--723
+[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chrAll.19971001.fsa -seed 100 -minlenl
+tr 100 -maxlenltr 1000 
+[9>)</usr/share/tex
+live/texmf-dist/fonts/type1/urw/times/utmr8a.pfb
 
 LaTeX Warning: There were undefined references.
 
@@ -8257,56 +8378,50 @@
 LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
 
  )
-(see the transcript file for additional information)</usr/share/texlive/texmf-d
-ist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fo
-nts/type1/public/amsfonts/cm/cmbxti10.pfb></usr/share/texlive/texmf-dist/fonts/
-type1/public/amsfonts/cm/cmitt10.pfbmv repfind.aux repfind-pdf.aux
-mv hop.aux hop-pdf.aux
-></usr/share/texlive/texmf-dist/fonts/type1
-/public/amsfonts/cm/cmmi12.pfb (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd)> [4</usr/share/texlive/texmf-dist/fonts/type1/publi
-c/amsfonts/cm/cmmi8.pfb]></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
-nts/cm/cmr10.pfb
-Overfull \hbox (13.12135pt too wide) in paragraph at lines 439--439
-[]\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac
-catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| 
-
-Overfull \hbox (7.99995pt too wide) in paragraph at lines 429--443
-[] 
-[5]></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
-cmr12.pfb
-Overfull \hbox (13.12135pt too wide) in paragraph at lines 452--452
-[]\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac
-catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| 
+(see the transcript file for additional information){/usr/share/texlive/texmf-d
+ist/fonts/enc/dvips/base/8r.enc}]></usr/share/texlive/texmf-dist/fonts/type1/publ
+ic/amsfonts/cm/cmex10.pfb>></usr/share/texlive/texmf-dist
+/fonts/type1/urw/times/utmri8a.pfb</usr/share/texlive/texmf-dist/fonts/type1/public/ams
+fonts/cm/cmmi12.pfb
 
-Overfull \hbox (12.18396pt too wide) in paragraph at lines 456--456
-[]\OT1/ptm/m/n/10.95 MLLREVTREERKNFYTNEWKVKDIPDFIVKTLELREFGFDHSGEGPSDRKNQYTDIRD
-LEDYIRATA...| 
+LaTeX Warning: Citation `vmatch' on page 10 undefined on input line 770.
 
-Overfull \hbox (7.99995pt too wide) in paragraph at lines 444--468
-[][] 
 
-Overfull \hbox (12.88672pt too wide) in paragraph at lines 470--472
-[]\OT1/ptm/m/n/12 Content:| 
+LaTeX Warning: Reference `parameters-cluster-default' on page 10 undefined on i
+nput line 790.
 
-Overfull \hbox (1.15051pt too wide) in paragraph at lines 478--478
-[][]| 
 
-Overfull \hbox (1.15051pt too wide) in paragraph at lines 480--480
-[][]| 
+LaTeX Warning: Reference `parameters-cluster-default' on page 10 undefined on i
+nput line 791.
 
-Overfull \hbox (1.15051pt too wide) in paragraph at lines 482--482
-[][]| 
 
-Overfull \hbox (38.49402pt too wide) in paragraph at lines 504--506
-[]\OT1/ptm/m/n/12 Content:| 
+LaTeX Warning: Citation `vmatch' on page 10 undefined on input line 792.
 
-Overfull \hbox (1.15051pt too wide) in paragraph at lines 506--506
-[]\OT1/ptm/m/n/12 -
+[10]>>pdflatex repfind.tex
+bibtex mgth
+</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
+cm/cmmi8.pfbThis is BibTeX, Version 0.99d (TeX Live 2019/dev/Debian)
+The top-level auxiliary file: ltrdigest.aux
+The style file: unsrt.bst
+I found no \bibdata command---while reading file ltrdigest.aux
+Warning--I didn't find a database entry for "EKW07"
+Warning--I didn't find a database entry for "gff3"
+Warning--I didn't find a database entry for "genometools"
+Warning--I didn't find a database entry for "hmmer"
+Warning--I didn't find a database entry for "pfam"
+(There was 1 error message)
+></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr1
+2.pfb
+Underfull \hbox (badness 10000) in paragraph at lines 824--826
+[]\OT1/ptm/m/sc/12 GFF3\OT1/ptm/m/n/12 , tab de-lim-ited file for-mat for genom
+e an-no-ta-tion. $\OT1/pcr/m/n/12 http : / / www .
 
-Overfull \hbox (1.15051pt too wide) in paragraph at lines 509--509
-[]\OT1/ptm/m/n/12 -
-[6>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.p
-fb [7]> (./mgth.aux)</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb
+Overfull \hbox (12.44012pt too wide) in paragraph at lines 861--872
+[][]
+[11make[3]: [Makefile:33: ltrdigest-pdf.bbl] Error 2 (ignored)
+test -e ltrdigest-pdf.bbl || touch ltrdigest-pdf.bbl
+></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb] [12] (./ltrharvest.aux>)</
+usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb
 
 LaTeX Warning: There were undefined references.
 
@@ -8315,87 +8430,185 @@
 
  )
 (see the transcript file for additional information){/usr/share/texlive/texmf-d
-ist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/texmf-dist/fonts/type1/publ
-ic/amsfonts/cm/cmmi10.pfb></u
-sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
-fonts/cm/cmmi12.pfb></usr/sha
-re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
-cm/cmmi7.pfb>mv ltrdigest.aux ltrdigest-pdf.aux
+ist/fonts/enc/dvips/base/8r.enc}></usr/share/texlive/texmf-dist/fonts/type1/publ
+ic/amsfonts/cm/cmmi10.pfb</usr/sh
+are/texlive/texmf-dist/fonts/type1/urw/courier/ucrb8a.pfbdiff ltrdigest-pdf.bbl ltrdigest.bbl || mv ltrdigest.bbl ltrdigest-pdf.bbl && rm -f ltrdigest.bbl
+></usr/share/texlive/texmf-dist/fonts/type1/public/ams
+fonts/cm/cmmi12.pfb></usr/share/texlive/t
+exmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>
+Output written on readjoiner.pdf (8 pages, 109445 bytes).
+Transcript written on readjoiner.log.
+</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
+cm/cmmi6.pfb></usr/share/texlive/texmf-dist/fon
+ts/type1/urw/helvetic/uhvr8a.pfb>0a1,3
+> \begin{thebibliography}{}
+> 
+> \end{thebibliography}
+</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi
+7.pfb
+Output written on packedindex.pdf (7 pages, 156996 bytes).
+Transcript written on packedindex.log.
+></usr/share/texlive/texmf-dist/fonts/type1/urw
+/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb>><
+/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb</usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.p
+fb></usr/sh
+are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>>mv ltrdigest.aux ltrdigest-pdf.aux
+</usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb</usr/share/te
+xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfbmv readjoiner.aux readjoiner-pdf.aux
+></usr/share/texlive/
+texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux
+test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux
+></usr/share/texlive/texmf-dist/fo
+nts/type1/urw/times/utmb8a.pfb>mv packedindex.aux packedindex-pdf.aux
+</usr/share/texlive/texmf-dist/fonts/type1/urw/t
+imes/utmbi8a.pfbtest -e ltrdigest-pdf.bbl && mv ltrdigest-pdf.bbl ltrdigest.bbl
+bibtex readjoiner
+>test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux
+</usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pf
+bThis is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex)
+ restricted \write18 enabled.
 >This is BibTeX, Version 0.99d (TeX Live 2019/dev/Debian)
-The top-level auxiliary file: ltrharvest.aux
-I found no \bibdata command---while reading file ltrharvest.aux
-I found no \bibstyle command---while reading file ltrharvest.aux
+The top-level auxiliary file: genomediff.aux
+The style file: unsrt.bst
+Database file #1: gtmanuals.bib
+</usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfbpdflatex ltrdigest.tex
+bibtex packedindex
+
+Output written on tallymer-tmp.pdf (9 pages, 139602 bytes).
+Transcript written on tallymer-tmp.log.
+>test -e genomediff-pdf.bbl || touch genomediff-pdf.bbl
+pdflatex tallymer-tmp
+diff genomediff-pdf.bbl genomediff.bbl || mv genomediff.bbl genomediff-pdf.bbl && rm -f genomediff.bbl
+0a1,25
+> \begin{thebibliography}{1}
+> 
+> \bibitem{HAU:DOM:WIE:2008}
+> Bernhard Haubold, Mirjana Domazet-Loso, and Thomas Wiehe.
+> \newblock An alignment-free distance measure for closely related genomes.
+> \newblock In {\em RECOMB-CG ’08: Proceedings of the international workshop on
+>   Comparative Genomics}, pages 87--99, Berlin, Heidelberg, 2008.
+>   Springer-Verlag.
+> 
+> \bibitem{HAU:PFA:DOM:WIE:2009}
+> B.~Haubold, P.~Pfaffelhuber, M.~Domazet-Loso, and T.~Wiehe.
+> \newblock Estimating mutation distances from unaligned genomes.
+> \newblock {\em J. Comput. Biol.}, 16:1487--1500, "Oct" 2009.
+> 
+> \bibitem{HAU:REE:PFA:2011}
+> Bernhard Haubold, Floyd~A. Reed, and Peter Pfaffelhuber.
+> \newblock Alignment-free estimation of nucleotide diversity.
+> \newblock {\em Bioinformatics}, 27(4):449--455, 2011.
+> 
+> \bibitem{genometools}
+> Gordon Gremme.
+> \newblock The \textsc{GenomeTools} genome analysis system.
+> \newblock \url{http://genometools.org}.
+> 
+> \end{thebibliography}
+entering extended mode
+(./uniquesub.tex
+LaTeX2e <2018-12-01>
+(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
+Output written on ltrharvest.pdf (13 pages, 160498 bytes).
+Transcript written on ltrharvest.log.
+
+Document Class: article 2018/09/03 v1.4i Standard LaTeX document class
+(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)mv genomediff.aux genomediff-pdf.aux
+)
+(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
+(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
+(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
+(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)test -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux
+
+(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)This is BibTeX, Version 0.99d (TeX Live 2019/dev/Debian)
+The top-level auxiliary file: hop.aux
+I found no \bibdata command---while reading file hop.aux
+I found no \bibstyle command---while reading file hop.aux
 (There were 2 error messages)
-</usr/share/tex
-live/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr1
-2.pfb>></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb</usr/share/texlive/t
-exmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb>
-</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb>></usr/s
-hare/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb></usr/share/texlive/
-texmf-dist/fonts/type1/urw/times/utmb8a.pfb>make[3]: [Makefile:36: ltrharvest-pdf.bbl] Error 2 (ignored)
-</usr/share/texlive/texmf-dist/font
-s/type1/urw/times/utmbi8a.pfbtest -e ltrharvest-pdf.bbl || touch ltrharvest-pdf.bbl
->test -e matstat-pdf.bbl && mv matstat-pdf.bbl matstat.bbl
-</usr/share/texlive/texmf-dist/fonts/type1/urw/ti
-mes/utmr8a.pfb>test -e hop-pdf.aux && mv hop-pdf.aux hop.aux
-</usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb
->
-Output written on genomediff.pdf (6 pages, 162970 bytes).
-Transcript written on genomediff.log.
+mv ltrharvest.aux ltrharvest-pdf.aux
+make[3]: [Makefile:32: hop-pdf.bbl] Error 2 (ignored)
+test -e hop-pdf.bbl || touch hop-pdf.bbl
+test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux
+)
+(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
+(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)test -e genomediff-pdf.bbl && mv genomediff-pdf.bbl genomediff.bbl
+
+(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)diff hop-pdf.bbl hop.bbl || mv hop.bbl hop-pdf.bbl && rm -f hop.bbl
+
+(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
+(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.stybibtex ltrharvest
+pdflatex genomediff.tex
+mv hop.aux hop-pdf.aux
+
+(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.stytest -e hop-pdf.aux && mv hop-pdf.aux hop.aux
+)
+(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfgThis is BibTeX, Version 0.99d (TeX Live 2019/dev/Debian)
+The top-level auxiliary file: mgth.aux
+I found no \bibdata command---while reading file mgth.aux
+I found no \bibstyle command---while reading file mgth.aux
+(There were 2 error messages)
+)This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex)
+ restricted \write18 enabled.
+)
+(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.stytest -e hop-pdf.bbl && mv hop-pdf.bbl hop.bbl
+)
+(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.stymake[3]: [Makefile:32: mgth-pdf.bbl] Error 2 (ignored)
+test -e mgth-pdf.bbl || touch mgth-pdf.bbl
+) (./optionman.sty)
+(./uniquesub.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)pdflatex hop.tex
+diff mgth-pdf.bbl mgth.bbl || mv mgth.bbl mgth-pdf.bbl && rm -f mgth.bbl
 This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex)
  restricted \write18 enabled.
-
-Output written on mgth.pdf (8 pages, 131572 bytes).
-Transcript written on mgth.log.
-diff ltrharvest-pdf.bbl ltrharvest.bbl || mv ltrharvest.bbl ltrharvest-pdf.bbl && rm -f ltrharvest.bbl
 This is BibTeX, Version 0.99d (TeX Live 2019/dev/Debian)
 The top-level auxiliary file: readjoiner.aux
 I found no \bibdata command---while reading file readjoiner.aux
 I found no \bibstyle command---while reading file readjoiner.aux
 (There were 2 error messages)
-mv mgth.aux mgth-pdf.aux
-mv genomediff.aux genomediff-pdf.aux
 entering extended mode
-(./tallymer-tmp.tex
+(./matstat.tex
 LaTeX2e <2018-12-01>
-(/usr/share/texlive/texmf-dist/tex/latex/base/article.clsmake[3]: [Makefile:35: readjoiner-pdf.bbl] Error 2 (ignored)
-test -e readjoiner-pdf.bbl || touch readjoiner-pdf.bbl
+(/usr/share/texlive/texmf-dist/tex/latex/base/article.clsmv mgth.aux mgth-pdf.aux
 
 Document Class: article 2018/09/03 v1.4i Standard LaTeX document class
-(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)pdflatex matstat.tex
-test -e hop-pdf.bbl && mv hop-pdf.bbl hop.bbl
-test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux
+(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)
+*geometry* driver: auto-detecting
+*geometry* detected driver: pdftex
+(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)make[3]: [Makefile:36: readjoiner-pdf.bbl] Error 2 (ignored)
+test -e readjoiner-pdf.bbl || touch readjoiner-pdf.bbl
 )
 (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
 (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
-(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
-(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
-(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)mv ltrharvest.aux ltrharvest-pdf.aux
-This is BibTeX, Version 0.99d (TeX Live 2019/dev/Debian)
+(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.styThis is BibTeX, Version 0.99d (TeX Live 2019/dev/Debian)
 The top-level auxiliary file: packedindex.aux
 The style file: unsrt.bst
 Database file #1: gtmanuals.bib
-diff readjoiner-pdf.bbl readjoiner.bbl || mv readjoiner.bbl readjoiner-pdf.bbl && rm -f readjoiner.bbl
-test -e packedindex-pdf.bbl || touch packedindex-pdf.bbl
-This is BibTeX, Version 0.99d (TeX Live 2019/dev/Debian)
-The top-level auxiliary file: uniquesub.aux
-I found no \bibdata command---while reading file uniquesub.aux
-I found no \bibstyle command---while reading file uniquesub.aux
-(There were 2 error messages)
-pdflatex hop.tex
-)
-(/usr/share/texlive/texmf-dist/tex/latex/url/url.stymake[3]: [Makefile:34: uniquesub-pdf.bbl] Error 2 (ignored)
-test -e uniquesub-pdf.bbl || touch uniquesub-pdf.bbl
+)entering extended mode
+(./repfind.tex
+(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty
+LaTeX2e <2018-12-01>
+(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls)
+(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)test -e packedindex-pdf.bbl || touch packedindex-pdf.bbl
+
+Document Class: article 2018/09/03 v1.4i Standard LaTeX document class
+(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)
+(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd)diff readjoiner-pdf.bbl readjoiner.bbl || mv readjoiner.bbl readjoiner-pdf.bbl && rm -f readjoiner.bbl
+)) [1
+(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
+(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty
+(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty{/var/lib/texmf/fo
+nts/map/pdftex/updmap/pdftex.map))
+(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty
+(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty))
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-> \begin{thebibliography}{1}
-> 
-> \bibitem{HAU:DOM:WIE:2008}
-> Bernhard Haubold, Mirjana Domazet-Loso, and Thomas Wiehe.
-> \newblock An alignment-free distance measure for closely related genomes.
-> \newblock In {\em RECOMB-CG ’08: Proceedings of the international workshop on
->   Comparative Genomics}, pages 87--99, Berlin, Heidelberg, 2008.
->   Springer-Verlag.
-> 
-> \bibitem{HAU:PFA:DOM:WIE:2009}
-> B.~Haubold, P.~Pfaffelhuber, M.~Domazet-Loso, and T.~Wiehe.
-> \newblock Estimating mutation distances from unaligned genomes.
-> \newblock {\em J. Comput. Biol.}, 16:1487--1500, "Oct" 2009.
-> 
-> \bibitem{HAU:REE:PFA:2011}
-> Bernhard Haubold, Floyd~A. Reed, and Peter Pfaffelhuber.
-> \newblock Alignment-free estimation of nucleotide diversity.
-> \newblock {\em Bioinformatics}, 27(4):449--455, 2011.
-> 
-> \bibitem{genometools}
-> Gordon Gremme.
-> \newblock The \textsc{GenomeTools} genome analysis system.
-> \newblock \url{http://genometools.org}.
-> 
-> \end{thebibliography}
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-[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads
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-
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+fonts/cm/cmr12.pfb>></usr/share/texlive/t
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+# file output/gt-tagerator--q-Q1.gz--pck-pck-human--e-1--maxocc-5.out already exists
+)</usr/share/tex
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-]</usr/share/texlive/texmf-dist/fonts
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-></usr/share/texlive/texmf-dist/fonts/type1/public/ams
-fonts/cm/cmmi12.pfb>test -e packedindex.bbl && mv packedindex.bbl packedindex-pdf.bbl
-></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
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-></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb>>test -e uniquesub.bbl && mv uniquesub.bbl uniquesub-pdf.bbl
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+></usr/share/texlive/texmf-dis
+t/fonts/type1/urw/times/utmr8a.pfb>mv packedindex.aux packedindex-pdf.aux
 
 Output written on ltrdigest.pdf (11 pages, 184604 bytes).
 Transcript written on ltrdigest.log.
->}]
-(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)
-(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd)mv ltrdigest.aux ltrdigest-pdf.aux
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-
-Output written on ltrharvest.pdf (13 pages, 159666 bytes).
-Transcript written on ltrharvest.log.
-entering extended mode
-(./tagerator-tmp.tex
+</usr/share/texlive/texmf-dist/fonts/type1/u
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 Overfull \hbox (1.48183pt too wide) in paragraph at lines 97--108
 \OT1/ptm/m/it/12 Tools \OT1/ptm/m/n/12 (see [[]] for in-stal-la-tion in-struc-t
 ions). There are two dif-fer-ent in-stal-la-tion op-tions for the \OT1/ptm/m/it
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-[1
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-(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)mv ltrharvest.aux ltrharvest-pdf.aux
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-(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.stytest -e ltrharvest.bbl && mv ltrharvest.bbl ltrharvest-pdf.bbl
+[1>test -e packedindex.bbl && mv packedindex.bbl packedindex-pdf.bbl
+mv ltrdigest.aux ltrdigest-pdf.aux
+]test -e ltrdigest.bbl && mv ltrdigest.bbl ltrdigest-pdf.bbl
 
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-(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
 Overfull \hbox (0.98593pt too wide) in paragraph at lines 115--125
 []\OT1/pcr/m/n/10.95 BLAST-Filename \OT1/ptm/m/n/12 de-notes the XML for-mat-te
 d BLAST-hit file, \OT1/pcr/m/n/10.95 Metagenome-Filename \OT1/ptm/m/n/12 the FA
 STA
-[2])
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-(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
-(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty
+[2
+Output written on readjoiner.pdf (8 pages, 108783 bytes).
+Transcript written on readjoiner.log.
+]mv readjoiner.aux readjoiner-pdf.aux
+
 Overfull \hbox (1.2452pt too wide) in paragraph at lines 256--257
 []\OT1/ptm/m/n/12 . If this op-
-[3)]
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-(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd) [4
-(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd)] [1{/var/lib/texmf/fo
-nts/map/pdftex/updmap/pdftex.map
+[3test -e readjoiner.bbl && mv readjoiner.bbl readjoiner-pdf.bbl
+] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd) [4]
 Overfull \hbox (13.12135pt too wide) in paragraph at lines 439--439
 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac
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 Overfull \hbox (7.99995pt too wide) in paragraph at lines 429--443
 [] 
-[5]}]
+[5]
 Overfull \hbox (13.12135pt too wide) in paragraph at lines 452--452
 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac
 catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| 
@@ -9911,8 +9944,7 @@
 
 Overfull \hbox (1.15051pt too wide) in paragraph at lines 509--509
 []\OT1/ptm/m/n/12 -
-[6
-(/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd)] [7] (./mgth.aux) )
+[6] [7] (./mgth.aux) )
 (see the transcript file for additional information){/usr/share/texlive/texmf-d
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@@ -9920,38 +9952,41 @@
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-hare/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb [1>]</usr/share/texlive/
+hare/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb></usr/share/texlive/
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-mes/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb
-> [2] [3]
+mes/utmr8a.pfbThis is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex)
+ restricted \write18 enabled.
+></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb
+>
 Output written on mgth.pdf (8 pages, 130907 bytes).
 Transcript written on mgth.log.
- [4]mv mgth.aux mgth-pdf.aux
-test -e mgth.bbl && mv mgth.bbl mgth-pdf.bbl
-
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-[][][][][][][][][][][][][][][][][][][][][][][][] 
-(./genomediff.bbl) [5] (./genomediff.aux) )
-(see the transcript file for additional information)</usr/share/texlive/texmf-d
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-}mv genomediff.aux genomediff-pdf.aux
-]test -e genomediff.bbl && mv genomediff.bbl genomediff-pdf.bbl
- [2] [3] [4]
+entering extended mode
+(./tagerator-tmp.tex
+LaTeX2e <2018-12-01>
+(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
+Document Class: article 2018/09/03 v1.4i Standard LaTeX document class
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+)
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+(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
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+(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
+(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
+(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty)
+No file tagerator-tmp.aux.
+(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)
+*geometry* driver: auto-detecting
+*geometry* detected driver: pdftex
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 Overfull \hbox (5.90344pt too wide) in paragraph at lines 265--265
 []\OT1/pcr/m/n/8 # computing prefix matches with up to 1 differences and at mos
 t 5 occurrences in the subject sequences[] 
@@ -10020,7 +10055,7 @@
    debian/rules override_dh_auto_test
 make[1]: Entering directory '/build/genometools-1.5.10+ds'
 bin/gt -test
-seed=1259532446
+seed=2025507274
 Lua serializer module...ok
 MD5 seqid module...ok
 PBS finder module...ok
@@ -10111,7 +10146,7 @@
 uint64hashtable...ok
 xdrop...ok
 cd testsuite; ./testsuite.rb -keywords 'gt_sketch and not gt_python and not gt_ruby'
-seed=2140334349
+seed=875577259
 1392: gt sketch short test                                        : ok
 1393: gt sketch short test (stdin)                                : ok
 1394: gt sketch short test (unknown output format)                : ok
@@ -10146,7 +10181,7 @@
 make[1]: Entering directory '/build/genometools-1.5.10+ds'
 dh_auto_install -- installmanpages useshared=yes \
   x32=no 64bit=yes errorcheck=no prefix=/build/genometools-1.5.10+ds/debian/tmp/usr
-	make -j16 install DESTDIR=/build/genometools-1.5.10\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" installmanpages useshared=yes x32=no 64bit=yes errorcheck=no prefix=/build/genometools-1.5.10\+ds/debian/tmp/usr
+	make -j15 install DESTDIR=/build/genometools-1.5.10\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" installmanpages useshared=yes x32=no 64bit=yes errorcheck=no prefix=/build/genometools-1.5.10\+ds/debian/tmp/usr
 make[2]: Entering directory '/build/genometools-1.5.10+ds'
 [link libgenometools.so]
 bin/gt -createman /tmp/gtmanpages
@@ -10191,7 +10226,7 @@
   -e 's!@CXX@!g++!' -e 's!@CXXFLAGS@!-g -O2 -ffile-prefix-map=/build/genometools-1.5.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security!' \
   -e 's!@LDFLAGS@!-L/build/genometools-1.5.10+ds/debian/tmp/usr/lib -Wl,-z,relro -Wl,-z,now -L/usr/local/lib!' \
   -e 's!@LIBS@! -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3!' -e "s!@VERSION@!`cat VERSION`!" \
-  -e 's!@BUILDSTAMP@!"2023-01-03 17:56:09"!' \
+  -e 's!@BUILDSTAMP@!"2021-12-02 13:43:07"!' \
   -e 's!@SYSTEM@!Linux!' <src/genometools-config.in \
   >/build/genometools-1.5.10+ds/debian/tmp/usr/bin/genometools-config
 chmod 755 /build/genometools-1.5.10+ds/debian/tmp/usr/bin/genometools-config
@@ -10352,24 +10387,24 @@
    dh_strip
    dh_makeshlibs
    dh_shlibdeps
-dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libgenometools0/usr/lib/libgenometools.so.0 was not linked against libglib-2.0.so.0 (it uses none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/genometools/usr/bin/gt was not linked against libglib-2.0.so.0 (it uses none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/genometools/usr/bin/gt was not linked against libdl.so.2 (it uses none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libgenometools0/usr/lib/libgenometools.so.0 was not linked against liblua5.1-des56.so.0 (it uses none of the library's symbols)
 dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libgenometools0/usr/lib/libgenometools.so.0 was not linked against liblua5.1-filesystem.so.0 (it uses none of the library's symbols)
 dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libgenometools0/usr/lib/libgenometools.so.0 was not linked against liblua5.1-lpeg.so.2 (it uses none of the library's symbols)
-dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libgenometools0/usr/lib/libgenometools.so.0 was not linked against liblua5.1-des56.so.0 (it uses none of the library's symbols)
-dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/genometools/usr/bin/gt was not linked against libdl.so.2 (it uses none of the library's symbols)
-dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/genometools/usr/bin/gt was not linked against libglib-2.0.so.0 (it uses none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libgenometools0/usr/lib/libgenometools.so.0 was not linked against libglib-2.0.so.0 (it uses none of the library's symbols)
    dh_installdeb
    dh_gencontrol
 dpkg-gencontrol: warning: Depends field of package python-genometools: substitution variable ${shlibs:Depends} used, but is not defined
-dpkg-gencontrol: warning: Depends field of package libgenometools0-dev: substitution variable ${shlibs:Depends} used, but is not defined
 dpkg-gencontrol: warning: package python-genometools: substitution variable ${python:Provides} unused, but is defined
 dpkg-gencontrol: warning: package python-genometools: substitution variable ${python:Versions} unused, but is defined
+dpkg-gencontrol: warning: Depends field of package libgenometools0-dev: substitution variable ${shlibs:Depends} used, but is not defined
    dh_md5sums
    dh_builddeb
 dpkg-deb: building package 'libgenometools0-dbgsym' in '../libgenometools0-dbgsym_1.5.10+ds-3_amd64.deb'.
+dpkg-deb: building package 'genometools' in '../genometools_1.5.10+ds-3_amd64.deb'.
 dpkg-deb: building package 'libgenometools0' in '../libgenometools0_1.5.10+ds-3_amd64.deb'.
 dpkg-deb: building package 'genometools-doc' in '../genometools-doc_1.5.10+ds-3_all.deb'.
-dpkg-deb: building package 'genometools' in '../genometools_1.5.10+ds-3_amd64.deb'.
 dpkg-deb: building package 'libgenometools0-dev' in '../libgenometools0-dev_1.5.10+ds-3_amd64.deb'.
 dpkg-deb: building package 'python-genometools' in '../python-genometools_1.5.10+ds-3_all.deb'.
 dpkg-deb: building package 'genometools-common' in '../genometools-common_1.5.10+ds-3_all.deb'.
@@ -10380,12 +10415,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: not including original source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/1483785/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/1483785/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/30554 and its subdirectories
-I: Current time: Tue Jan  3 18:01:44 -12 2023
-I: pbuilder-time-stamp: 1672812104
+I: removing directory /srv/workspace/pbuilder/1483785 and its subdirectories
+I: Current time: Thu Dec  2 13:45:24 +14 2021
+I: pbuilder-time-stamp: 1638402324