Diff of the two buildlogs: -- --- b1/build.log 2021-11-30 15:03:04.616687111 +0000 +++ b2/build.log 2021-11-30 15:47:04.686373436 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jan 2 08:54:11 -12 2023 -I: pbuilder-time-stamp: 1672692851 +I: Current time: Wed Dec 1 05:03:13 +14 2021 +I: pbuilder-time-stamp: 1638284593 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Sat Feb 2 21:34:26 2019 -12 +gpgv: Signature made Sun Feb 3 23:34:26 2019 +14 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "andrius.merkys@gmail.com" gpgv: Can't check signature: No public key @@ -33,136 +33,170 @@ dpkg-source: info: applying spglib.diff I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2357528/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3136253/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3136253/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3136253/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='066c80320bcf40a7bb903bfb6f333aa9' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2357528' - PS1='# ' - PS2='> ' + INVOCATION_ID=f849793ebed64bad884b2ba9c1d2a39e + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3136253 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.uaNha0yK1s/pbuilderrc_rNZO --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.uaNha0yK1s/b1 --logfile b1/build.log cod-tools_2.3+dfsg-3.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.uaNha0yK1s/pbuilderrc_JCVa --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.uaNha0yK1s/b2 --logfile b2/build.log cod-tools_2.3+dfsg-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos15-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Dec 10 16:20 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/2357528/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Dec 1 05:03 sh -> bash + lrwxrwxrwx 1 root root 4 Nov 8 11:58 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/3136253/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -448,7 +482,7 @@ Get: 188 http://deb.debian.org/debian buster/main amd64 swig3.0 amd64 3.0.12-2 [1397 kB] Get: 189 http://deb.debian.org/debian buster/main amd64 swig amd64 3.0.12-2 [310 kB] Get: 190 http://deb.debian.org/debian buster/main amd64 tree amd64 1.8.0-1 [49.3 kB] -Fetched 136 MB in 2s (62.5 MB/s) +Fetched 136 MB in 2s (59.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -1248,7 +1282,8 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/cod-tools-2.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cod-tools_2.3+dfsg-3_source.changes +hostname: Name or service not known +I: Running cd /build/cod-tools-2.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cod-tools_2.3+dfsg-3_source.changes dpkg-buildpackage: info: source package cod-tools dpkg-buildpackage: info: source version 2.3+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -8219,7 +8254,7 @@ tests/shtests/cif2json_004.sh: OK tests/shtests/cif_printout_Python_003.sh: OK tests/shtests/cif_find_duplicates_010.sh: OK -tests/shtests/molcif2sdf_002.sh: ./tests/shtests/molcif2sdf_002.chk: 3: ./tests/shtests/molcif2sdf_002.chk: babel: not found +tests/shtests/molcif2sdf_002.sh: ./tests/shtests/molcif2sdf_002.chk: line 3: babel: command not found Test skipped - test only compatible with Open Babel version 2.3.0 tests/shtests/cif_disorder_groups_006.sh: OK tests/shtests/have_equiv_timestamps_007.sh: OK @@ -8238,7 +8273,7 @@ tests/shtests/cif_CODify_002.sh: OK tests/shtests/neighbour_list_from_mol_001.sh: Test skipped - no Chemistry::Mol and/or Chemistry::File::SMILES tests/shtests/cif_CODify_001.sh: OK -tests/shtests/molcif2sdf_003.sh: ./tests/shtests/molcif2sdf_003.chk: 3: ./tests/shtests/molcif2sdf_003.chk: babel: not found +tests/shtests/molcif2sdf_003.sh: ./tests/shtests/molcif2sdf_003.chk: line 3: babel: command not found Test skipped - test only compatible with Open Babel version 2.3.2 tests/shtests/cif_tcod_tree_001.sh: FAILED: 7,8d6 @@ -8293,12 +8328,12 @@ > scripts/cif_parse_old_star: No --version option tests/shtests/cif_split_primitive_002.sh: OK tests/shtests/cif_find_duplicates_004.sh: OK -tests/shtests/codcif2sdf_004.sh: ./tests/shtests/codcif2sdf_004.chk: 3: ./tests/shtests/codcif2sdf_004.chk: babel: not found +tests/shtests/codcif2sdf_004.sh: ./tests/shtests/codcif2sdf_004.chk: line 3: babel: command not found Test skipped - test only compatible with Open Babel version 2.3.2 tests/shtests/cif-to-utf8_001.sh: OK tests/shtests/check_occupancies_003.sh: OK tests/shtests/cif_cod_numbers_001.sh: Test skipped - not running tests requiring network access -tests/shtests/neighbour_list_from_obmol_003.sh: ./tests/shtests/neighbour_list_from_obmol_003.chk: 3: ./tests/shtests/neighbour_list_from_obmol_003.chk: babel: not found +tests/shtests/neighbour_list_from_obmol_003.sh: ./tests/shtests/neighbour_list_from_obmol_003.chk: line 3: babel: command not found Test skipped - test only compatible with Open Babel version 2.3.0 tests/shtests/cif_disorder_groups_001.sh: OK tests/shtests/check_option_descriptions.sh: FAILED: @@ -8332,7 +8367,7 @@ tests/shtests/has_unknown_value_003.sh: OK tests/shtests/has_unknown_value_002.sh: OK tests/shtests/have_equiv_lattices_005.sh: OK -tests/shtests/neighbour_list_from_obmol_001.sh: ./tests/shtests/neighbour_list_from_obmol_001.chk: 3: ./tests/shtests/neighbour_list_from_obmol_001.chk: babel: not found +tests/shtests/neighbour_list_from_obmol_001.sh: ./tests/shtests/neighbour_list_from_obmol_001.chk: line 3: babel: command not found Test skipped - test only compatible with Open Babel version 2.3.0 tests/shtests/are_equiv_meas_008.sh: OK tests/shtests/set_loop_tag_003.sh: OK @@ -8348,9 +8383,9 @@ tests/shtests/cif2json_005.sh: OK tests/shtests/cif_split_primitive_003.sh: OK tests/shtests/has_special_value_001.sh: OK -tests/shtests/codcif2sdf_002.sh: ./tests/shtests/codcif2sdf_002.chk: 3: ./tests/shtests/codcif2sdf_002.chk: babel: not found +tests/shtests/codcif2sdf_002.sh: ./tests/shtests/codcif2sdf_002.chk: line 3: babel: command not found Test skipped - test only compatible with Open Babel version 2.3.0 -tests/shtests/neighbour_list_from_obmol_002.sh: ./tests/shtests/neighbour_list_from_obmol_002.chk: 3: ./tests/shtests/neighbour_list_from_obmol_002.chk: babel: not found +tests/shtests/neighbour_list_from_obmol_002.sh: ./tests/shtests/neighbour_list_from_obmol_002.chk: line 3: babel: command not found Test skipped - test only compatible with Open Babel version 2.3.0 tests/shtests/cif_find_duplicates_005.sh: OK tests/shtests/has_unknown_value_001.sh: OK @@ -8413,7 +8448,7 @@ tests/shtests/cif_disorder_groups_005.sh: OK tests/shtests/have_equiv_timestamps_005.sh: OK tests/shtests/cif_disorder_groups_007.sh: OK -tests/shtests/molcif2sdf_001.sh: ./tests/shtests/molcif2sdf_001.chk: 3: ./tests/shtests/molcif2sdf_001.chk: babel: not found +tests/shtests/molcif2sdf_001.sh: ./tests/shtests/molcif2sdf_001.chk: line 3: babel: command not found Test skipped - test only compatible with Open Babel version 2.3.0 tests/shtests/have_equiv_timestamps_002.sh: OK tests/shtests/cif_printout_Python_004.sh: OK @@ -8443,7 +8478,7 @@ tests/shtests/cif_filter_001.sh: OK tests/shtests/cif_split_primitive_009.sh: OK tests/shtests/have_equiv_lattices_001.sh: OK -tests/shtests/codcif2sdf_003.sh: ./tests/shtests/codcif2sdf_003.chk: 3: ./tests/shtests/codcif2sdf_003.chk: babel: not found +tests/shtests/codcif2sdf_003.sh: ./tests/shtests/codcif2sdf_003.chk: line 3: babel: command not found Test skipped - test only compatible with Open Babel version 2.3.2 tests/shtests/set_loop_tag_013.sh: OK tests/shtests/check_mandatory_presence_004.sh: OK @@ -8519,10 +8554,10 @@ tests/shtests/msg_parse_001.sh: OK tests/shtests/cif_print_loop_001.sh: OK tests/shtests/symop_algebra_004.sh: OK -tests/shtests/molcif2sdf_004.sh: ./tests/shtests/molcif2sdf_004.chk: 3: ./tests/shtests/molcif2sdf_004.chk: babel: not found +tests/shtests/molcif2sdf_004.sh: ./tests/shtests/molcif2sdf_004.chk: line 3: babel: command not found Test skipped - test only compatible with Open Babel version 2.3.2 tests/shtests/set_loop_tag_011.sh: OK -tests/shtests/codcif2sdf_001.sh: ./tests/shtests/codcif2sdf_001.chk: 3: ./tests/shtests/codcif2sdf_001.chk: babel: not found +tests/shtests/codcif2sdf_001.sh: ./tests/shtests/codcif2sdf_001.chk: line 3: babel: command not found Test skipped - test only compatible with Open Babel version 2.3.0 tests/shtests/have_equiv_bibliographies_006.sh: OK tests/shtests/have_equiv_bibliographies_010.sh: OK @@ -8725,136 +8760,7 @@ make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/build/cod-tools-2.3+dfsg/src/components/codcif' make[5]: Entering directory '/build/cod-tools-2.3+dfsg/src/components/pycodcif' -python setup.py build --build-lib build/python2.7/ -running build -running build_py -running build_ext -copying ./pycodcif.py -> build/python2.7/pycodcif -tests/cases/cif_parser_test_116.inp: OK -tests/cases/cif_parser_test_099.inp: OK -tests/cases/cif_parser_test_075.inp: OK -tests/cases/cif_parser_test_110.inp: OK -tests/cases/cif_parser_test_101.inp: OK -tests/cases/cif_parser_test_056.inp: OK -tests/cases/cif_parser_test_005.inp: OK -tests/cases/cif_parser_test_109.inp: OK -tests/cases/cif_parser_test_025.inp: OK -tests/cases/cif_parser_test_006.inp: OK -tests/cases/cif_parser_test_013.inp: OK -tests/cases/cif_parser_test_031.inp: OK -tests/cases/cif_parser_test_092.inp: OK -tests/cases/cif_parser_test_115.inp: OK -tests/cases/cif_parser_test_035.inp: OK -tests/cases/cif_parser_test_087.inp: OK -tests/cases/cif_parser_test_077.inp: OK -tests/cases/cif_parser_test_018.inp: OK -tests/cases/cif_parser_test_072.inp: OK -tests/cases/cif_parser_test_062.inp: OK -tests/cases/cif_parser_test_052.inp: OK -tests/cases/cif_parser_test_020.inp: OK -tests/cases/cif_parser_test_114.inp: OK -tests/cases/cif_parser_test_042.inp: OK -tests/cases/cif_parser_test_107.inp: OK -tests/cases/cif_parser_test_102.inp: OK -tests/cases/cif_parser_test_044.inp: OK -tests/cases/cif_parser_test_004.inp: OK -tests/cases/cif_parser_test_093.inp: OK -tests/cases/cif_parser_test_011.inp: OK -tests/cases/cif_parser_test_119.inp: OK -tests/cases/cif_parser_test_076.inp: OK -tests/cases/cif_parser_test_047.inp: OK -tests/cases/cif_parser_test_073.inp: OK -tests/cases/cif_parser_test_012.inp: OK -tests/cases/cif_parser_test_030.inp: OK -tests/cases/cif_parser_test_034.inp: OK -tests/cases/cif_parser_test_067.inp: OK -tests/cases/cif_parser_test_009.inp: OK -tests/cases/cif_parser_test_007.inp: OK -tests/cases/cif_parser_test_055.inp: OK -tests/cases/cif_parser_test_053.inp: OK -tests/cases/cif_parser_test_028.inp: OK -tests/cases/cif_parser_test_016.inp: OK -tests/cases/cif_parser_test_086.inp: OK -tests/cases/cif_parser_test_027.inp: OK -tests/cases/cif_parser_test_079.inp: OK -tests/cases/cif_parser_test_069.inp: OK -tests/cases/cif_parser_test_045.inp: OK -tests/cases/cif_parser_test_059.inp: OK -tests/cases/cif_parser_test_049.inp: OK -tests/cases/cif_parser_test_039.inp: OK -tests/cases/cif_parser_test_010.inp: OK -tests/cases/cif_parser_test_108.inp: OK -tests/cases/cif_parser_test_106.inp: OK -tests/cases/cif_parser_test_104.inp: OK -tests/cases/cif_parser_test_065.inp: OK -tests/cases/cif_parser_test_022.inp: OK -tests/cases/cif_parser_test_098.inp: OK -tests/cases/cif_parser_test_112.inp: OK -tests/cases/cif_parser_test_118.inp: OK -tests/cases/cif_parser_test_057.inp: OK -tests/cases/cif_parser_test_024.inp: OK -tests/cases/cif_parser_test_111.inp: OK -tests/cases/cif_parser_test_091.inp: OK -tests/cases/cif_parser_test_014.inp: OK -tests/cases/cif_parser_test_046.inp: OK -tests/cases/cif_parser_test_063.inp: OK -tests/cases/cif_parser_test_089.inp: OK -tests/cases/cif_parser_test_061.inp: OK -tests/cases/cif_parser_test_051.inp: OK -tests/cases/cif_parser_test_041.inp: OK -tests/cases/cif_parser_test_064.inp: OK -tests/cases/cif_parser_test_085.inp: OK -tests/cases/cif_parser_test_096.inp: OK -tests/cases/cif_parser_test_082.inp: OK -tests/cases/cif_parser_test_088.inp: OK -tests/cases/cif_parser_test_019.inp: OK -tests/cases/cif_parser_test_054.inp: OK -tests/cases/cif_parser_test_001.inp: OK -tests/cases/cif_parser_test_094.inp: OK -tests/cases/cif_parser_test_026.inp: OK -tests/cases/cif_parser_test_032.inp: OK -tests/cases/cif_parser_test_023.inp: OK -tests/cases/cif_parser_test_078.inp: OK -tests/cases/cif_parser_test_113.inp: OK -tests/cases/cif_parser_test_058.inp: OK -tests/cases/cif_parser_test_117.inp: OK -tests/cases/cif_parser_test_036.inp: OK -tests/cases/cif_parser_test_081.inp: OK -tests/cases/cif_parser_test_043.inp: OK -tests/cases/cif_parser_test_083.inp: OK -tests/cases/cif_parser_test_090.inp: OK -tests/cases/cif_parser_test_080.inp: OK -tests/cases/cif_parser_test_070.inp: OK -tests/cases/cif_parser_test_060.inp: OK -tests/cases/cif_parser_test_050.inp: OK -tests/cases/cif_parser_test_040.inp: OK -tests/cases/cif_parser_test_008.inp: OK -tests/cases/cif_parser_test_015.inp: OK -tests/cases/cif_parser_test_074.inp: OK -tests/cases/cif_parser_test_003.inp: OK -tests/cases/cif_parser_test_066.inp: OK -tests/cases/cif_parser_test_002.inp: OK -tests/cases/cif_parser_test_068.inp: OK -tests/cases/cif_parser_test_021.inp: OK -tests/cases/cif_parser_test_048.inp: OK -tests/cases/cif_parser_test_038.inp: OK -tests/cases/cif_parser_test_095.inp: OK -tests/cases/cif_parser_test_084.inp: OK -tests/cases/cif_parser_test_100.inp: OK -tests/cases/cif_parser_test_017.inp: OK -tests/cases/cif_parser_test_033.inp: OK -tests/cases/cif_parser_test_029.inp: OK -tests/cases/cif_parser_test_103.inp: OK -tests/cases/cif_parser_test_097.inp: OK -tests/cases/cif_parser_test_105.inp: OK -tests/cases/cif_parser_test_037.inp: OK -tests/cases/cif_parser_test_071.inp: OK -unicode_001: OK -build_cif_001: OK -tag_index_002: OK -build_cif_002: OK -build_cif_003: OK -tag_index_001: OK +make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/build/cod-tools-2.3+dfsg/src/components/pycodcif' make[4]: Leaving directory '/build/cod-tools-2.3+dfsg/src/components' make[4]: Entering directory '/build/cod-tools-2.3+dfsg/src/lib' @@ -9119,41 +9025,41 @@ dh_strip -O--no-parallel dh_makeshlibs -O--no-parallel dh_shlibdeps -O--no-parallel -dpkg-shlibdeps: warning: symbol freex used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol cexception_reraise used by debian/libgetoptions0/usr/lib/x86_64-linux-gnu/libgetoptions.so.0.01 found in none of the libraries +dpkg-shlibdeps: warning: symbol callocx used by debian/libgetoptions0/usr/lib/x86_64-linux-gnu/libgetoptions.so.0.01 found in none of the libraries +dpkg-shlibdeps: warning: symbol cexception_raise_at used by debian/libgetoptions0/usr/lib/x86_64-linux-gnu/libgetoptions.so.0.01 found in none of the libraries +dpkg-shlibdeps: warning: symbol cxprintf used by debian/libgetoptions0/usr/lib/x86_64-linux-gnu/libgetoptions.so.0.01 found in none of the libraries +dpkg-shlibdeps: warning: symbol reallocx used by debian/libgetoptions0/usr/lib/x86_64-linux-gnu/libgetoptions.so.0.01 found in none of the libraries +dpkg-shlibdeps: warning: symbol pow used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol callocx used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries dpkg-shlibdeps: warning: symbol mallocx used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol cexception_message used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol cxprintf used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries dpkg-shlibdeps: warning: symbol reallocx used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol cexception_reraise used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol cexception_message used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries dpkg-shlibdeps: warning: symbol fopenx used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol cxprintf used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol freex used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol cexception_raise_at used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries dpkg-shlibdeps: warning: symbol strdupx used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol callocx used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol progname used by debian/libcodcif2/usr/lib/x86_64-linux-gnu/libcodcif.so.2.3 found in none of the libraries dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: symbol cxprintf used by debian/libgetoptions0/usr/lib/x86_64-linux-gnu/libgetoptions.so.0.01 found in none of the libraries -dpkg-shlibdeps: warning: symbol cexception_reraise used by debian/libgetoptions0/usr/lib/x86_64-linux-gnu/libgetoptions.so.0.01 found in none of the libraries -dpkg-shlibdeps: warning: symbol cexception_raise_at used by debian/libgetoptions0/usr/lib/x86_64-linux-gnu/libgetoptions.so.0.01 found in none of the libraries -dpkg-shlibdeps: warning: symbol reallocx used by debian/libgetoptions0/usr/lib/x86_64-linux-gnu/libgetoptions.so.0.01 found in none of the libraries -dpkg-shlibdeps: warning: symbol callocx used by debian/libgetoptions0/usr/lib/x86_64-linux-gnu/libgetoptions.so.0.01 found in none of the libraries dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel +dpkg-deb: building package 'libcod-cif-parser-bison-perl-dbgsym' in '../libcod-cif-parser-bison-perl-dbgsym_2.3+dfsg-3_amd64.deb'. dpkg-deb: building package 'libcexceptions0' in '../libcexceptions0_2.3+dfsg-3_amd64.deb'. dpkg-deb: building package 'libcexceptions-dev' in '../libcexceptions-dev_2.3+dfsg-3_amd64.deb'. -dpkg-deb: building package 'libgetoptions0-dbgsym' in '../libgetoptions0-dbgsym_2.3+dfsg-3_amd64.deb'. -dpkg-deb: building package 'libcodcif2' in '../libcodcif2_2.3+dfsg-3_amd64.deb'. dpkg-deb: building package 'libcod-usermessage-perl' in '../libcod-usermessage-perl_2.3+dfsg-3_all.deb'. +dpkg-deb: building package 'libcodcif2' in '../libcodcif2_2.3+dfsg-3_amd64.deb'. dpkg-deb: building package 'libcodcif-dev' in '../libcodcif-dev_2.3+dfsg-3_amd64.deb'. -dpkg-deb: building package 'libcod-cif-parser-bison-perl-dbgsym' in '../libcod-cif-parser-bison-perl-dbgsym_2.3+dfsg-3_amd64.deb'. +dpkg-deb: building package 'libgetoptions0-dbgsym' in '../libgetoptions0-dbgsym_2.3+dfsg-3_amd64.deb'. +dpkg-deb: building package 'cod-tools' in '../cod-tools_2.3+dfsg-3_amd64.deb'. dpkg-deb: building package 'python3-pycodcif' in '../python3-pycodcif_2.3+dfsg-3_amd64.deb'. dpkg-deb: building package 'python-pycodcif' in '../python-pycodcif_2.3+dfsg-3_amd64.deb'. -dpkg-deb: building package 'cod-tools' in '../cod-tools_2.3+dfsg-3_amd64.deb'. -dpkg-deb: building package 'libgetoptions-dev' in '../libgetoptions-dev_2.3+dfsg-3_amd64.deb'. dpkg-deb: building package 'libcod-cif-parser-bison-perl' in '../libcod-cif-parser-bison-perl_2.3+dfsg-3_amd64.deb'. -dpkg-deb: building package 'libcexceptions0-dbgsym' in '../libcexceptions0-dbgsym_2.3+dfsg-3_amd64.deb'. -dpkg-deb: building package 'libcodcif2-dbgsym' in '../libcodcif2-dbgsym_2.3+dfsg-3_amd64.deb'. +dpkg-deb: building package 'libgetoptions-dev' in '../libgetoptions-dev_2.3+dfsg-3_amd64.deb'. dpkg-deb: building package 'libcod-cif-parser-yapp-perl' in '../libcod-cif-parser-yapp-perl_2.3+dfsg-3_all.deb'. +dpkg-deb: building package 'libcodcif2-dbgsym' in '../libcodcif2-dbgsym_2.3+dfsg-3_amd64.deb'. +dpkg-deb: building package 'libcexceptions0-dbgsym' in '../libcexceptions0-dbgsym_2.3+dfsg-3_amd64.deb'. dpkg-deb: building package 'libgetoptions0' in '../libgetoptions0_2.3+dfsg-3_amd64.deb'. dpkg-deb: building package 'python-pycodcif-dbgsym' in '../python-pycodcif-dbgsym_2.3+dfsg-3_amd64.deb'. dpkg-deb: building package 'python3-pycodcif-dbgsym' in '../python3-pycodcif-dbgsym_2.3+dfsg-3_amd64.deb'. @@ -9166,12 +9072,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3136253/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3136253/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2357528 and its subdirectories -I: Current time: Mon Jan 2 09:26:09 -12 2023 -I: pbuilder-time-stamp: 1672694769 +I: removing directory /srv/workspace/pbuilder/3136253 and its subdirectories +I: Current time: Wed Dec 1 05:47:04 +14 2021 +I: pbuilder-time-stamp: 1638287224