Diff of the two buildlogs: -- --- b1/build.log 2021-08-07 16:31:22.995541073 +0000 +++ b2/build.log 2021-08-07 16:36:28.372033217 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Sep 9 10:49:33 -12 2022 -I: pbuilder-time-stamp: 1662763773 +I: Current time: Sun Aug 8 06:31:25 +14 2021 +I: pbuilder-time-stamp: 1628353885 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Tue Jul 17 21:03:04 2018 -12 +gpgv: Signature made Wed Jul 18 23:03:04 2018 +14 gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./avogadro_1.2.0-4.dsc @@ -34,136 +34,170 @@ dpkg-source: info: applying libsymspg.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/360/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/63354/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/63354/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/63354/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='4ca999f21e654eb3847198079d60824c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='360' - PS1='# ' - PS2='> ' + INVOCATION_ID=4e746779b08e43b399b0cfa147d1ab02 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=63354 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.NBd7tS6Weo/pbuilderrc_pXb9 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.NBd7tS6Weo/b1 --logfile b1/build.log avogadro_1.2.0-4.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.NBd7tS6Weo/pbuilderrc_eAA5 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.NBd7tS6Weo/b2 --logfile b2/build.log avogadro_1.2.0-4.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 5.10.0-0.bpo.8-amd64 #1 SMP Debian 5.10.46-2~bpo10+1 (2021-07-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 9 02:46 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/360/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 8 06:31 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 7 22:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/63354/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -484,7 +518,7 @@ Get: 249 http://deb.debian.org/debian buster/main amd64 python-sip-dev amd64 4.19.14+dfsg-2 [116 kB] Get: 250 http://deb.debian.org/debian buster/main amd64 qt4-dev-tools amd64 4:4.8.7+dfsg-18+deb10u1 [4089 kB] Get: 251 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] -Fetched 201 MB in 3s (60.7 MB/s) +Fetched 201 MB in 3s (76.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -1523,7 +1557,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/avogadro-1.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/avogadro-1.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package avogadro dpkg-buildpackage: info: source version 1.2.0-4 dpkg-buildpackage: info: source distribution unstable @@ -1709,7 +1743,7 @@ -- Build files have been written to: /build/avogadro-1.2.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/avogadro-1.2.0' dh_auto_build - cd obj-x86_64-linux-gnu && make -j16 + cd obj-x86_64-linux-gnu && make -j15 make[1]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/avogadro-1.2.0 -B/build/avogadro-1.2.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/avogadro-1.2.0/obj-x86_64-linux-gnu/CMakeFiles /build/avogadro-1.2.0/obj-x86_64-linux-gnu/CMakeFiles/progress.marks @@ -1720,93 +1754,91 @@ make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/depend make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= -[ 0%] Generating ui_bsdysettingswidget.h -[ 1%] Generating qrc_navigatetool.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_bsdysettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/bsdysettingswidget.ui -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name navigatetool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.qrc +[ 0%] Generating moc_basisset.cxx +[ 1%] Generating moc_bsdyengine.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx_parameters [ 1%] Generating moc_navigatetool.cxx -[ 1%] Generating moc_elementcolor.cxx -[ 2%] Generating moc_bsdyengine.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx_parameters -[ 2%] Generating moc_basisset.cxx -[ 2%] Generating moc_gaussianset.cxx -[ 2%] Generating moc_slaterset.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx_parameters +[ 1%] Generating moc_gaussianset.cxx +[ 1%] Generating ui_bsdysettingswidget.h +[ 2%] Generating qrc_navigatetool.cxx [ 2%] Generating ui_navigatesettingswidget.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx_parameters +[ 2%] Generating moc_elementcolor.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx_parameters +[ 2%] Generating moc_slaterset.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name navigatetool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.qrc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_bsdysettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/bsdysettingswidget.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/ui_navigatesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/tools/navigatesettingswidget.ui +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx_parameters Scanning dependencies of target tubegen make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build Scanning dependencies of target msym -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= +[ 2%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/ANSR.cpp.o [ 2%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Bitmap.c.o -[ 2%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/eprintf.c.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/Bitmap.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Bitmap.c [ 2%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Core3DMath.c.o -[ 2%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o -[ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/context.c.o -[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/CrystalCell.cpp.o -[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/ANSR.cpp.o -[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/character_table.c.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/context.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c -[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Cell.cpp.o -[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/character_table.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/Bitmap.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Bitmap.c +[ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/character_table.c.o +[ 2%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Cell.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/Core3DMath.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Core3DMath.c -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/eprintf.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/eprintf.c cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/ANSR.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/ANSR.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/character_table.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c +[ 2%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o +[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/context.c.o +[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/CrystalCell.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/Cell.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Cell.cpp -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/CrystalCell.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/diamond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/diamond.cpp -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/fcc.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/context.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c +[ 3%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/eprintf.c.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/CrystalCell.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/eprintf.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/eprintf.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c:11: + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c:11: + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= -Scanning dependencies of target elementcolor -[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/elements.c.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/graphite.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/elements.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/elements.c -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= +[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/fcc.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp +Scanning dependencies of target elementcolor In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/elements.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= [ 3%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/elementcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -1823,15 +1855,12 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/graphite.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp [ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubeGen.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubeGen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubeGen.cpp -[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/equivalence_set.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/equivalence_set.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c -Scanning dependencies of target bsdyengine -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/geometry.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/geometry.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, @@ -1840,19 +1869,24 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' Scanning dependencies of target navigatetool +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build +Scanning dependencies of target bsdyengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp [ 3%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -1864,16 +1898,12 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:28, - from /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.h:29, + from /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp -Scanning dependencies of target OpenQube -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -1885,15 +1915,19 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.h:29, - from /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:28, + from /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +Scanning dependencies of target OpenQube +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/atom.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/atom.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.cpp +[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/linalg.c.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/linalg.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, @@ -1904,16 +1938,16 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/linalg.c.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/linalg.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c -[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym.c.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/msym.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c:12: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp +[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym.c.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/msym.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c:11: @@ -1928,19 +1962,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basisset.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/basisset.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/new:39, - from /usr/include/eigen3/Eigen/Core:82, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp:17: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/orbital.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/orbital.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, @@ -1951,23 +1972,48 @@ ^~~~~~~ [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/permutation.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/permutation.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c -[ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/point_group.c.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/point_group.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/point_group.c.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/point_group.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c +[ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetrize.c.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symmetrize.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c:12: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/stdlib.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c:11: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetry.c.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symmetry.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/stdio.h:27, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.h:16, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.h:15, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:11: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symop.c.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symop.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/math.h:27, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c:11: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 4%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx -[ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetrize.c.o In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -1984,28 +2030,57 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symmetrize.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/stdlib.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c:11: +[ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp +[ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basisset.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/basisset.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/new:39, + from /usr/include/eigen3/Eigen/Core:82, + from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, + from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetry.c.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symmetry.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/stdio.h:27, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.h:16, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.h:15, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:11: +[ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/new:39, + from /usr/include/eigen3/Eigen/Core:82, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symop.c.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symop.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/math.h:27, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c:11: +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx +[ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -2025,8 +2100,6 @@ ^~~~~~~ [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/cube.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/cube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.cpp -[ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessukout.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gamessukout.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, @@ -2036,6 +2109,26 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 4%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessukout.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gamessukout.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, @@ -2066,28 +2159,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 4%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/orca.cpp.o -[ 5%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/orca.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2101,17 +2174,14 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/new:39, - from /usr/include/eigen3/Eigen/Core:82, - from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, - from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ +[ 5%] Linking C static library libmsym.a +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -P CMakeFiles/msym.dir/cmake_clean_target.cmake +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -E cmake_link_script CMakeFiles/msym.dir/link.txt --verbose=1 +/usr/bin/ar qc libmsym.a CMakeFiles/msym.dir/src/character_table.c.o CMakeFiles/msym.dir/src/context.c.o CMakeFiles/msym.dir/src/elements.c.o CMakeFiles/msym.dir/src/equivalence_set.c.o CMakeFiles/msym.dir/src/geometry.c.o CMakeFiles/msym.dir/src/linalg.c.o CMakeFiles/msym.dir/src/msym.c.o CMakeFiles/msym.dir/src/msym_error.c.o CMakeFiles/msym.dir/src/orbital.c.o CMakeFiles/msym.dir/src/permutation.c.o CMakeFiles/msym.dir/src/point_group.c.o CMakeFiles/msym.dir/src/symmetrize.c.o CMakeFiles/msym.dir/src/symmetry.c.o CMakeFiles/msym.dir/src/symop.c.o +/usr/bin/ranlib libmsym.a [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2127,25 +2197,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 5%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ +[ 5%] Built target msym [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianset.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gaussianset.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -2160,24 +2212,13 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 5%] Linking C static library libmsym.a -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -P CMakeFiles/msym.dir/cmake_clean_target.cmake -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -E cmake_link_script CMakeFiles/msym.dir/link.txt --verbose=1 -/usr/bin/ar qc libmsym.a CMakeFiles/msym.dir/src/character_table.c.o CMakeFiles/msym.dir/src/context.c.o CMakeFiles/msym.dir/src/elements.c.o CMakeFiles/msym.dir/src/equivalence_set.c.o CMakeFiles/msym.dir/src/geometry.c.o CMakeFiles/msym.dir/src/linalg.c.o CMakeFiles/msym.dir/src/msym.c.o CMakeFiles/msym.dir/src/msym_error.c.o CMakeFiles/msym.dir/src/orbital.c.o CMakeFiles/msym.dir/src/permutation.c.o CMakeFiles/msym.dir/src/point_group.c.o CMakeFiles/msym.dir/src/symmetrize.c.o CMakeFiles/msym.dir/src/symmetry.c.o CMakeFiles/msym.dir/src/symop.c.o -/usr/bin/ranlib libmsym.a +[ 5%] Linking CXX static library elementcolor.a +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 +/usr/bin/ar qc elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o +/usr/bin/ranlib elementcolor.a make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 5%] Built target msym -[ 5%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ +[ 5%] Built target elementcolor [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molden.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/molden.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -2201,15 +2242,11 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 5%] Linking CXX static library elementcolor.a -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 -/usr/bin/ar qc elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -/usr/bin/ranlib elementcolor.a -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 5%] Built target elementcolor +[ 5%] Linking CXX static library libtubegen.a +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -P CMakeFiles/tubegen.dir/cmake_clean_target.cmake [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/mopacaux.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/mopacaux.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -E cmake_link_script CMakeFiles/tubegen.dir/link.txt --verbose=1 In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2226,9 +2263,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 5%] Linking CXX static library libtubegen.a -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -P CMakeFiles/tubegen.dir/cmake_clean_target.cmake -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -E cmake_link_script CMakeFiles/tubegen.dir/link.txt --verbose=1 /usr/bin/ar qc libtubegen.a CMakeFiles/tubegen.dir/Bitmap.c.o CMakeFiles/tubegen.dir/Core3DMath.c.o CMakeFiles/tubegen.dir/eprintf.c.o CMakeFiles/tubegen.dir/ANSR.cpp.o CMakeFiles/tubegen.dir/Cell.cpp.o CMakeFiles/tubegen.dir/CrystalCell.cpp.o CMakeFiles/tubegen.dir/diamond.cpp.o CMakeFiles/tubegen.dir/fcc.cpp.o CMakeFiles/tubegen.dir/graphite.cpp.o CMakeFiles/tubegen.dir/TubeGen.cpp.o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o /usr/bin/ranlib libtubegen.a make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' @@ -2249,6 +2283,8 @@ ^~~~~~~ [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_basisset.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx +[ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, @@ -2260,8 +2296,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, @@ -2304,88 +2338,88 @@ [ 6%] Built target navigatetool make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 6%] Generating moc_atom.cxx -[ 6%] Generating moc_color.cxx -[ 7%] Generating moc_bond.cxx -[ 7%] Generating moc_engine.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_atom.cxx_parameters -[ 7%] Generating qrc_pythontool.cxx -[ 7%] Generating moc_colorbutton.cxx -[ 7%] Generating moc_dockextension.cxx -[ 7%] Generating moc_elementdetail_p.cxx +[ 7%] Generating moc_extension.cxx +[ 7%] Generating moc_elementtranslator.cxx +[ 7%] Generating moc_fragment.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_extension.cxx_parameters [ 7%] Generating moc_cube.cxx [ 7%] Generating moc_animation.cxx -[ 7%] Generating moc_elementtranslator.cxx -[ 7%] Generating moc_dockwidget.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_bond.cxx_parameters +[ 7%] Generating qrc_pythontool.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_cube.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_elementtranslator.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name pythontool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/qrc_pythontool.cxx /build/avogadro-1.2.0/libavogadro/src/pythontool.qrc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_animation.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_fragment.cxx_parameters +[ 7%] Generating moc_elementdetail_p.cxx +[ 7%] Generating moc_engine.cxx +[ 8%] Generating moc_atom.cxx +[ 8%] Generating moc_bond.cxx +[ 8%] Generating moc_color.cxx +[ 8%] Generating moc_colorbutton.cxx +[ 8%] Generating moc_dockwidget.cxx +[ 8%] Generating moc_dockextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_atom.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_bond.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_color.cxx_parameters -[ 8%] Generating moc_extension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_colorbutton.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_cube.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_dockextension.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_elementtranslator.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_engine.cxx_parameters -[ 8%] Generating moc_glwidget.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_dockextension.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_dockwidget.cxx_parameters -[ 8%] Generating moc_fragment.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_extension.cxx_parameters +[ 8%] Generating moc_glwidget.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_glwidget.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_fragment.cxx_parameters -[ 8%] Generating moc_meshgenerator.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_meshgenerator.cxx_parameters [ 8%] Generating moc_mesh.cxx +[ 8%] Generating moc_meshgenerator.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_mesh.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_meshgenerator.cxx_parameters [ 8%] Generating moc_molecule.cxx -[ 8%] Generating moc_periodictablescene_p.cxx -[ 8%] Generating moc_plugin.cxx -[ 9%] Generating moc_plotwidget.cxx -[ 9%] Generating moc_moleculefile.cxx -[ 9%] Generating moc_periodictableview.cxx +[ 8%] Generating moc_moleculefile.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_molecule.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_moleculefile.cxx_parameters +[ 8%] Generating moc_periodictablescene_p.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx_parameters +[ 9%] Generating moc_plotwidget.cxx +[ 9%] Generating moc_periodictableview.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictableview.cxx_parameters +[ 9%] Generating moc_plugin.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_plotwidget.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_plugin.cxx_parameters -[ 9%] Generating moc_primitive.cxx [ 9%] Generating moc_pluginmanager.cxx -[ 9%] Generating moc_protein.cxx +[ 9%] Generating moc_primitive.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pluginmanager.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_primitive.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_protein.cxx_parameters [ 9%] Generating moc_readfilethread_p.cxx -[ 9%] Generating moc_residue.cxx +[ 9%] Generating moc_protein.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_protein.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx_parameters +[ 9%] Generating moc_residue.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_residue.cxx_parameters +[ 9%] Generating moc_textmatrixeditor.cxx +[ 9%] Generating moc_toolgroup.cxx [ 10%] Generating moc_zmatrix.cxx [ 10%] Generating moc_tool.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_zmatrix.cxx_parameters -[ 10%] Generating moc_textmatrixeditor.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_tool.cxx_parameters -[ 10%] Generating moc_toolgroup.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_toolgroup.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_zmatrix.cxx_parameters +[ 10%] Generating moc_pythonengine_p.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx_parameters [ 10%] Generating moc_pythontool_p.cxx [ 10%] Generating moc_pythonerror.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx_parameters [ 10%] Generating moc_pythonextension_p.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_toolgroup.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythontool_p.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonerror.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythontool_p.cxx_parameters -[ 10%] Generating moc_pythonengine_p.cxx -[ 10%] Generating libavogadro_bg.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx_parameters [ 10%] Generating libavogadro_ar.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ar.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ar.ts +[ 10%] Generating libavogadro_bg.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/bg.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bg.ts +[ 10%] Generating libavogadro_bs.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/bs.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bs.ts +[ 10%] Generating libavogadro_ca.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ca.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.ts [ 11%] Generating libavogadro_ca@valencia.qm -[ 11%] Generating libavogadro_ca.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ca@valencia.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts -[ 11%] Generating libavogadro_bs.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ca.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/bs.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bs.ts [ 11%] Generating libavogadro_cs.qm [ 11%] Generating libavogadro_da.qm [ 11%] Generating libavogadro_de.qm @@ -2394,216 +2428,216 @@ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/de.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_de.ts [ 11%] Generating libavogadro_el.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/el.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_el.ts -[ 11%] Generating libavogadro_en_CA.qm [ 11%] Generating libavogadro_en_AU.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_AU.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_AU.ts -[ 11%] Generating libavogadro_en_GB.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ar.ts +[ 11%] Generating libavogadro_en_CA.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_CA.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_CA.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bg.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +[ 11%] Generating libavogadro_en_GB.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_GB.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_GB.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ar.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bs.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_da.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_cs.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -[ 11%] Generating libavogadro_es.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_de.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/es.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_es.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_da.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_AU.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_CA.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_de.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_el.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_GB.ts -[ 11%] Generating libavogadro_et.qm +[ 11%] Generating libavogadro_es.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/es.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_es.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +[ 11%] Generating libavogadro_et.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_CA.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_AU.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/et.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_et.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_GB.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -[ 12%] Generating libavogadro_eu.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/eu.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_eu.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_es.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_et.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_AU.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_AU.qm +[ 12%] Generating libavogadro_eu.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/eu.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_eu.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_eu.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca@valencia.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ar.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ar.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bg.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bg.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_de.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_de.qm [ 12%] Generating libavogadro_fi.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/fi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fi.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ar.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ar.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_AU.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_AU.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_CA.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_CA.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fi.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... [ 12%] Generating libavogadro_fr.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/fr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fr.ts [ 12%] Generating libavogadro_gl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/gl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_gl.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_de.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_de.qm -[ 12%] Generating libavogadro_he.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_es.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_es.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_cs.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_cs.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_da.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_da.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_el.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_el.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_et.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_et.qm +[ 12%] Generating libavogadro_he.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_GB.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_GB.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fi.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/he.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_he.ts -[ 12%] Generating libavogadro_hi.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/hi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hi.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fr.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_gl.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_eu.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_eu.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_CA.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_CA.qm Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bs.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bs.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_gl.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +[ 12%] Generating libavogadro_hi.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/hi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hi.ts [ 12%] Generating libavogadro_hu.qm -[ 12%] Generating libavogadro_id.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/hu.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hu.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_he.ts +[ 12%] Generating libavogadro_id.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/id.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_id.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hi.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bs.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bs.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_GB.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_GB.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hu.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_id.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... [ 12%] Generating libavogadro_it.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_cs.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_cs.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_da.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_da.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_el.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_el.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/it.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_it.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_he.ts [ 13%] Generating libavogadro_ja.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ja.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ja.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca@valencia.qm [ 13%] Generating libavogadro_kn.qm +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +[ 13%] Generating libavogadro_ko.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/kn.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_kn.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ko.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ko.ts [ 13%] Generating libavogadro_ms.qm -[ 13%] Generating libavogadro_ko.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ms.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ms.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ko.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ko.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_it.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ja.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... [ 13%] Generating libavogadro_nb.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hi.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/nb.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nb.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_et.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_et.qm -[ 13%] Generating libavogadro_nl.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/nl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nl.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_kn.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hu.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_id.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ms.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_it.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_kn.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ja.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ko.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ms.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nb.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_eu.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_eu.qm +[ 13%] Generating libavogadro_nl.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/nl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nl.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nl.ts -[ 13%] Generating libavogadro_oc.qm -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/oc.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fi.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fi.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_gl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_gl.qm +[ 13%] Generating libavogadro_oc.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/oc.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.ts [ 13%] Generating libavogadro_pl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/pl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pl.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pl.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fr.qm Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_he.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_he.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_gl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_gl.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_it.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_it.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hi.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hi.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fr.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pl.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_kn.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_kn.qm +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hu.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hu.qm [ 13%] Generating libavogadro_pt.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/pt.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ko.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ko.qm [ 14%] Generating libavogadro_pt_BR.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/pt_BR.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hu.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hu.qm [ 14%] Generating libavogadro_ru.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ru.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ru.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_id.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_id.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nb.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nb.qm [ 14%] Generating libavogadro_sk.qm -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sk.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sk.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... [ 14%] Generating libavogadro_sl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sl.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ru.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ja.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ja.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_id.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_id.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ms.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ms.qm [ 14%] Generating libavogadro_sq.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sq.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sq.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sk.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sl.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ms.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ms.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_kn.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_kn.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sq.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ja.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ja.qm Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts [ 14%] Generating libavogadro_sr.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sr.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ru.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... [ 14%] Generating libavogadro_sv.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sv.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sv.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sk.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sl.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... [ 14%] Generating libavogadro_th.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/th.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_th.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sq.ts +[ 14%] Generating libavogadro_tr.qm +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/tr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_tr.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sr.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +[ 14%] Generating libavogadro_ug.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ug.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sv.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_th.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nb.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nb.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_it.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_it.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ko.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ko.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nl.qm -[ 14%] Generating libavogadro_tr.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/tr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_tr.ts -[ 14%] Generating libavogadro_ug.qm -[ 15%] Generating libavogadro_uk.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ug.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/uk.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_uk.ts -[ 15%] Generating libavogadro_vi.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/vi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_tr.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nl.qm +[ 15%] Generating libavogadro_uk.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/uk.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_uk.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_uk.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pl.qm +[ 15%] Generating libavogadro_vi.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/vi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.ts [ 15%] Generating libavogadro_zh_CN.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/zh_CN.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pl.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt_BR.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ru.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ru.qm [ 15%] Generating libavogadro_zh_TW.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/zh_TW.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sq.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sq.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_th.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_th.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt_BR.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ru.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ru.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sk.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sk.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sq.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sq.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sv.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sv.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sr.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_th.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_th.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_tr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_tr.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_uk.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_uk.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_CN.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_TW.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= @@ -2611,34 +2645,34 @@ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o -[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o -[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementdetail_p.cpp.o -[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o +[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o +[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/animation.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/animation.cpp -[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockextension.cpp.o -[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/cylinder_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/atom.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/atom.cpp -[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o -[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/bond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/bond.cpp -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/colorbutton.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colorbutton.cpp -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/dockextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/dockextension.cpp -[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o -[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/camera.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/camera.cpp +[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o +[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementdetail_p.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementtranslator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp +[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/elementdetail_p.cpp +[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o +[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o +[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockextension.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/colorbutton.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colorbutton.cpp [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockwidget.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementtranslator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp +[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/cylinder_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp +[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/color.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/color.cpp -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/dockwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/dockwidget.cpp -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/camera.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/camera.cpp +[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engine.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/dockextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/dockextension.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/cube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/cube.cpp -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/extension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extension.cpp -[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/dockwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/dockwidget.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementitem_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/elementitem_p.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/engine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2666,8 +2700,9 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/cylinder_p.h:30, - from /build/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/libavogadro/src/bond.h:31, + from /build/avogadro-1.2.0/libavogadro/src/bond.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -2683,12 +2718,11 @@ from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/libavogadro/src/bond.h:31, - from /build/avogadro-1.2.0/libavogadro/src/bond.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/atom.h:31, + from /build/avogadro-1.2.0/libavogadro/src/atom.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engine.cpp.o In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2700,9 +2734,8 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/libavogadro/src/atom.h:31, - from /build/avogadro-1.2.0/libavogadro/src/atom.cpp:27: + from /build/avogadro-1.2.0/libavogadro/src/camera.h:35, + from /build/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -2727,14 +2760,10 @@ from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/color.h:32, - from /build/avogadro-1.2.0/libavogadro/src/color.cpp:26: + from /usr/include/qt4/QtGui/qgraphicsitem.h:45, + from /usr/include/qt4/QtGui/QGraphicsItem:1, + from /build/avogadro-1.2.0/libavogadro/src/elementdetail_p.h:29, + from /build/avogadro-1.2.0/libavogadro/src/elementdetail_p.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -2745,12 +2774,12 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/dockwidget.cpp:18: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/elementtranslator.h:28, + from /build/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -2765,8 +2794,8 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/elementtranslator.h:28, - from /build/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/cylinder_p.h:30, + from /build/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -2781,9 +2810,8 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/plugin.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extension.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/color.h:32, + from /build/avogadro-1.2.0/libavogadro/src/color.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -2792,10 +2820,16 @@ from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtGui/qgraphicsitem.h:45, - from /usr/include/qt4/QtGui/QGraphicsItem:1, - from /build/avogadro-1.2.0/libavogadro/src/elementdetail_p.h:29, - from /build/avogadro-1.2.0/libavogadro/src/elementdetail_p.cpp:27: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/plugin.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/dockextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/dockextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -2823,16 +2857,15 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/camera.h:35, - from /build/avogadro-1.2.0/libavogadro/src/camera.cpp:28: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/libavogadro/src/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/dockwidget.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/engine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2861,6 +2894,10 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/extension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extension.cpp +[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/fragment.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/fragment.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/fragment.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2874,13 +2911,10 @@ from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/plugin.h:29, from /build/avogadro-1.2.0/libavogadro/src/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/dockextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/dockextension.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/extension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/fragment.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/fragment.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/fragment.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2989,6 +3023,10 @@ ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/mesh.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/mesh.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/mesh.cpp +[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o +[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/meshgenerator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/molecule.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/molecule.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3006,8 +3044,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/meshgenerator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3019,15 +3055,12 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/meshgenerator.h:30, - from /build/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:27: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/libavogadro/src/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/molecule.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/molecule.cpp -[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moleculefile.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moleculefile.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/moleculefile.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3039,12 +3072,15 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/libavogadro/src/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: + from /build/avogadro-1.2.0/libavogadro/src/meshgenerator.h:30, + from /build/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moleculefile.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moleculefile.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/moleculefile.cpp +[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/navigate.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/navigate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3061,10 +3097,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/navigate.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/navigate.cpp -[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/neighborlist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/neighborlist.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3081,6 +3113,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/neighborlist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/neighborlist.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3134,8 +3168,14 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +/build/avogadro-1.2.0/libavogadro/src/mesh.cpp: In constructor 'Avogadro::Mesh::Mesh(QObject*)': +/build/avogadro-1.2.0/libavogadro/src/mesh.cpp:38:30: warning: conversion from 'long unsigned int' to 'unsigned int' changes value from '18446744073709551615' to '4294967295' [-Woverflow] + m_lock(new QReadWriteLock) + ^ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictableview.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/periodictableview.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/periodictableview.cpp +[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plotaxis.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/plotaxis.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3152,12 +3192,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -/build/avogadro-1.2.0/libavogadro/src/mesh.cpp: In constructor 'Avogadro::Mesh::Mesh(QObject*)': -/build/avogadro-1.2.0/libavogadro/src/mesh.cpp:38:30: warning: conversion from 'long unsigned int' to 'unsigned int' changes value from '18446744073709551615' to '4294967295' [-Woverflow] - m_lock(new QReadWriteLock) - ^ -[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plotaxis.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/plotaxis.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3274,6 +3308,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 19%] Linking CXX shared library ../../../../../lib/libavogadro_OpenQube.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenQube.dir/link.txt --verbose=1 [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitivelist.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/primitivelist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/primitivelist.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -3292,6 +3328,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libavogadro_OpenQube.so.0 -o ../../../../../lib/libavogadro_OpenQube.so.0.1.0 CMakeFiles/OpenQube.dir/atom.cpp.o CMakeFiles/OpenQube.dir/basisset.cpp.o CMakeFiles/OpenQube.dir/basissetloader.cpp.o CMakeFiles/OpenQube.dir/cube.cpp.o CMakeFiles/OpenQube.dir/gamessukout.cpp.o CMakeFiles/OpenQube.dir/gamessus.cpp.o CMakeFiles/OpenQube.dir/orca.cpp.o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o CMakeFiles/OpenQube.dir/gaussianset.cpp.o CMakeFiles/OpenQube.dir/molden.cpp.o CMakeFiles/OpenQube.dir/molecule.cpp.o CMakeFiles/OpenQube.dir/mopacaux.cpp.o CMakeFiles/OpenQube.dir/slaterset.cpp.o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -lQtCore -lQtGui [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/protein.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/protein.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/protein.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -3327,9 +3364,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 19%] Linking CXX shared library ../../../../../lib/libavogadro_OpenQube.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenQube.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libavogadro_OpenQube.so.0 -o ../../../../../lib/libavogadro_OpenQube.so.0.1.0 CMakeFiles/OpenQube.dir/atom.cpp.o CMakeFiles/OpenQube.dir/basisset.cpp.o CMakeFiles/OpenQube.dir/basissetloader.cpp.o CMakeFiles/OpenQube.dir/cube.cpp.o CMakeFiles/OpenQube.dir/gamessukout.cpp.o CMakeFiles/OpenQube.dir/gamessus.cpp.o CMakeFiles/OpenQube.dir/orca.cpp.o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o CMakeFiles/OpenQube.dir/gaussianset.cpp.o CMakeFiles/OpenQube.dir/molden.cpp.o CMakeFiles/OpenQube.dir/molecule.cpp.o CMakeFiles/OpenQube.dir/mopacaux.cpp.o CMakeFiles/OpenQube.dir/slaterset.cpp.o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -lQtCore -lQtGui [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/residue.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/residue.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -3386,8 +3420,29 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../../lib/libavogadro_OpenQube.so.0 ../../../../../lib/libavogadro_OpenQube.so +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 20%] Built target OpenQube +make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/DependInfo.cmake --color= +Scanning dependencies of target qube +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 20%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/qube.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/qube.dir/qube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/iostream:38, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp +[ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/tool.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/tool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3404,8 +3459,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/tool.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/tool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3422,15 +3475,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../../lib/libavogadro_OpenQube.so.0 ../../../../../lib/libavogadro_OpenQube.so -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 20%] Built target OpenQube -make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/DependInfo.cmake --color= [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/toolgroup.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/toolgroup.cpp -Scanning dependencies of target qube In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3445,18 +3491,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 20%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/qube.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/qube.dir/qube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/iostream:38, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp:2: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/undosequence.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/undosequence.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/undosequence.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -3564,8 +3598,15 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 21%] Linking CXX executable ../../../../../bin/qube +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 +/usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -rdynamic CMakeFiles/qube.dir/qube.cpp.o -o ../../../../../bin/qube -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../../lib/libavogadro_OpenQube.so.0.1.0 -lQtOpenGL -lQtGui -lQtCore +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 21%] Built target qube [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonengine_p.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp +[ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3582,8 +3623,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3620,11 +3659,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 21%] Linking CXX executable ../../../../../bin/qube -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 -/usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -rdynamic CMakeFiles/qube.dir/qube.cpp.o -o ../../../../../bin/qube -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../../lib/libavogadro_OpenQube.so.0.1.0 -lQtOpenGL -lQtGui -lQtCore -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 21%] Built target qube [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_atom.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_atom.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_atom.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -3827,8 +3861,6 @@ ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_fragment.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_fragment.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_fragment.cxx -[ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_glwidget.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_glwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3846,6 +3878,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_glwidget.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_glwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3920,6 +3954,8 @@ ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_moleculefile.cxx +[ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3936,8 +3972,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4007,6 +4041,8 @@ ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pluginmanager.cxx +[ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_primitive.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_primitive.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_primitive.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4023,8 +4059,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_primitive.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_primitive.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_primitive.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4043,6 +4077,8 @@ ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_protein.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_protein.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_protein.cxx +[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4059,8 +4095,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx +[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_residue.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_residue.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_residue.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4076,8 +4112,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_residue.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_residue.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_residue.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4116,6 +4150,8 @@ ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_tool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_tool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_tool.cxx +[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_toolgroup.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4132,8 +4168,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_toolgroup.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4168,6 +4202,8 @@ ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx +[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonerror.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4184,8 +4220,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonerror.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4204,6 +4238,7 @@ ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx +[ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4222,7 +4257,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythontool_p.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -4263,17 +4297,12 @@ make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' @@ -4281,125 +4310,101 @@ make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 25%] Generating moc_ribbonengine.cxx -[ 25%] Generating moc_qtaimengine.cxx -[ 25%] Generating ui_hbondsettingswidget.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx_parameters +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 25%] Generating ui_qtaimsettingswidget.h -[ 25%] Generating ui_labelsettingswidget.h -[ 25%] Generating ui_ringsettingswidget.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_hbondsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/hbondsettingswidget.ui -[ 25%] Generating moc_hbondengine.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_qtaimsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/qtaimsettingswidget.ui [ 25%] Generating ui_cartoonsettingswidget.h +[ 25%] Generating ui_hbondsettingswidget.h +[ 25%] Generating moc_ribbonengine.cxx [ 25%] Generating moc_forceengine.cxx +[ 25%] Generating ui_labelsettingswidget.h [ 25%] Generating ui_ribbonsettingswidget.h +[ 25%] Generating ui_wiresettingswidget.h +[ 25%] Generating moc_qtaimengine.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_cartoonsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/cartoonsettingswidget.ui +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_hbondsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/hbondsettingswidget.ui +[ 25%] Generating moc_hbondengine.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_labelsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/labelsettingswidget.ui +make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend +[ 25%] Generating ui_ringsettingswidget.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx_parameters [ 25%] Generating moc_polygonengine.cxx [ 25%] Generating ui_sticksettingswidget.h -[ 25%] Generating moc_wireengine.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_labelsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/labelsettingswidget.ui -[ 25%] Generating ui_wiresettingswidget.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_ribbonsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/ribbonsettingswidget.ui +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_wiresettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/wiresettingswidget.ui +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_ringsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/ringsettingswidget.ui -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_qtaimsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/qtaimsettingswidget.ui +[ 25%] Generating ui_surfacesettingswidget.h [ 25%] Generating ui_spheresettingswidget.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_cartoonsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/cartoonsettingswidget.ui -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_sticksettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/sticksettingswidget.ui -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_wiresettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/wiresettingswidget.ui -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_ribbonsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/ribbonsettingswidget.ui +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_surfacesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/surfacesettingswidget.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_spheresettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/spheresettingswidget.ui -make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend -[ 25%] Generating ui_surfacesettingswidget.h -make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_surfacesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/surfacesettingswidget.ui -[ 25%] Generating moc_labelengine.cxx -[ 25%] Generating moc_ringengine.cxx -[ 25%] Generating moc_stickengine.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx_parameters -[ 25%] Generating moc_sphereengine.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx_parameters [ 25%] Generating ui_axessettingswidget.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_axessettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/axessettingswidget.ui [ 25%] Generating moc_cartoonengine.cxx -[ 25%] Generating moc_simplewireengine.cxx -[ 25%] Generating ui_dipolesettingswidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_axessettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/axessettingswidget.ui -[ 25%] Generating moc_dipoleengine.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_dipolesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/dipolesettingswidget.ui -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx_parameters +[ 25%] Generating moc_axesengine.cxx +[ 25%] Generating moc_stickengine.cxx +[ 25%] Generating moc_wireengine.cxx +[ 25%] Generating ui_dipolesettingswidget.h +[ 25%] Generating moc_sphereengine.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx_parameters +[ 25%] Generating moc_ringengine.cxx [ 25%] Generating moc_surfaceengine.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx_parameters +[ 25%] Generating moc_labelengine.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_dipolesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/dipolesettingswidget.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx_parameters -make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend -[ 25%] Generating moc_axesengine.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx_parameters +make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx_parameters -[ 25%] Generating qrc_selectrotatetool.cxx +[ 25%] Generating moc_dipoleengine.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx_parameters +[ 25%] Generating moc_simplewireengine.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name selectrotatetool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.qrc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= -[ 25%] Generating moc_selectrotatetool.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= Scanning dependencies of target forceengine -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build -Scanning dependencies of target ribbonengine -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -Scanning dependencies of target hbondengine -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -Scanning dependencies of target qtaimengine -make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -Scanning dependencies of target simplewireengine +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build Scanning dependencies of target polygonengine -make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build -[ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp -Scanning dependencies of target surfaceengine -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= -Scanning dependencies of target dipoleengine -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build -Scanning dependencies of target ringengine +[ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp +[ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp +Scanning dependencies of target cartoonengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build -[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o +make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4416,15 +4421,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp -make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -Scanning dependencies of target labelengine -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -Scanning dependencies of target wireengine In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4436,23 +4432,39 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:28, - from /build/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: + from /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.h:28, + from /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +Scanning dependencies of target hbondengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build +Scanning dependencies of target surfaceengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +Scanning dependencies of target ribbonengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build +[ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp +Scanning dependencies of target simplewireengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +Scanning dependencies of target wireengine make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o +make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build -Scanning dependencies of target cartoonengine +[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp +Scanning dependencies of target labelengine +Scanning dependencies of target qtaimengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp -Scanning dependencies of target stickengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4464,12 +4476,22 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.h:28, - from /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +Scanning dependencies of target ringengine +[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp +Scanning dependencies of target dipoleengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4481,13 +4503,20 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build +[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +Scanning dependencies of target stickengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build +[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o +Scanning dependencies of target sphereengine make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -4500,26 +4529,15 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:30, + from /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/ringengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp -Scanning dependencies of target sphereengine -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/wireengine.dir/wireengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4531,12 +4549,20 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:28, + from /build/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o +[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/wireengine.dir/wireengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o +Scanning dependencies of target axesengine +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4548,11 +4574,17 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.h:28, - from /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.h:28, + from /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/ringengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4580,12 +4612,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:28, - from /build/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -4598,15 +4631,11 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:30, - from /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: + from /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:31, + from /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp -Scanning dependencies of target axesengine -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4618,13 +4647,12 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: + from /build/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:28, + from /build/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o -make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4636,11 +4664,12 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/sphereengine.dir/sphereengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4652,16 +4681,11 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:31, - from /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: + from /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/sphereengine.dir/sphereengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp -Scanning dependencies of target selectrotatetool -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4679,7 +4703,6 @@ # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -4697,8 +4720,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4710,9 +4733,8 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, - from /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:33, - from /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -4734,8 +4756,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4747,13 +4769,16 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx +[ 28%] Linking CXX shared module ../../../lib/polygonengine.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4765,13 +4790,21 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 29%] Built target polygonengine +make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 29%] Generating qrc_selectrotatetool.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name selectrotatetool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.qrc +[ 29%] Generating moc_selectrotatetool.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx_parameters +[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4783,12 +4816,54 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= +Scanning dependencies of target selectrotatetool +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 29%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, + from /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:33, + from /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o +[ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:30, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -4806,8 +4881,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx +[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4819,12 +4894,16 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o +[ 31%] Linking CXX shared module ../../../lib/simplewireengine.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -4842,18 +4921,19 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 29%] Linking CXX shared module ../../../lib/simplewireengine.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 29%] Linking CXX shared module ../../../lib/polygonengine.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx -[ 30%] Built target simplewireengine +[ 31%] Built target simplewireengine make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 31%] Generating qrc_autorotatetool.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name autorotatetool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.qrc +[ 31%] Linking CXX shared module ../../../lib/forceengine.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 31%] Generating moc_autorotatetool.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= +[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4865,36 +4945,21 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:30, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 30%] Generating qrc_autorotatetool.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name autorotatetool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.qrc -[ 30%] Generating moc_autorotatetool.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx_parameters -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 30%] Built target polygonengine -make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 30%] Generating qrc_clickmeasuretool.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name clickmeasuretool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.qrc -[ 30%] Generating moc_clickmeasuretool.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= Scanning dependencies of target autorotatetool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o +[ 31%] Built target forceengine +make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend [ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp -Scanning dependencies of target clickmeasuretool -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4906,11 +4971,18 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.h:28, + from /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 31%] Generating qrc_clickmeasuretool.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name clickmeasuretool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.qrc +[ 31%] Generating moc_clickmeasuretool.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx_parameters +[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4922,15 +4994,18 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.h:28, - from /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:25: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= +Scanning dependencies of target clickmeasuretool +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp +[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4942,14 +5017,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.h:31, - from /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:28: + from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:41, + from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp +[ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4961,33 +5035,31 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:41, - from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.h:31, + from /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 31%] Linking CXX shared module ../../../lib/dipoleengine.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 32%] Linking CXX shared module ../../../lib/surfaceengine.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/surfaceengine.so CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 32%] Linking CXX shared module ../../../lib/forceengine.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 32%] Linking CXX shared module ../../../lib/ribbonengine.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 32%] Built target surfaceengine +[ 32%] Built target dipoleengine make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 32%] Built target forceengine [ 32%] Generating qrc_bondcentrictool.cxx -make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name bondcentrictool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.qrc -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx [ 33%] Generating moc_bondcentrictool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx_parameters -[ 33%] Generating qrc_autoopttool.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name autoopttool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.qrc In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5004,46 +5076,50 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 33%] Linking CXX shared module ../../../lib/sphereengine.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 33%] Built target surfaceengine +make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 33%] Generating qrc_autoopttool.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name autoopttool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.qrc [ 33%] Generating moc_autoopttool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx_parameters -[ 33%] Linking CXX shared module ../../../lib/dipoleengine.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 33%] Generating moc_skeletontree.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= +[ 33%] Linking CXX shared module ../../../lib/ringengine.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 33%] Built target ribbonengine +make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 33%] Generating qrc_drawtool.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name drawtool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.qrc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= -[ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 33%] Linking CXX shared module ../../../lib/ribbonengine.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 +[ 33%] Generating moc_drawtool.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= Scanning dependencies of target bondcentrictool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build Scanning dependencies of target autoopttool -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build +Scanning dependencies of target drawtool +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5059,8 +5135,11 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp +[ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawtool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp +[ 33%] Built target sphereengine +make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5078,20 +5157,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 33%] Linking CXX shared module ../../../lib/hbondengine.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 -[ 33%] Built target dipoleengine -make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 33%] Generating qrc_drawtool.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name drawtool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.qrc -[ 33%] Generating moc_drawtool.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= -[ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5103,63 +5168,27 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, + from /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.h:30, + from /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:30: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 33%] Built target ribbonengine -make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -Scanning dependencies of target drawtool -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build [ 33%] Generating qrc_aligntool.cxx -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name aligntool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/aligntool.qrc -[ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawtool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp [ 33%] Generating moc_aligntool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx_parameters -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, - from /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.h:30, - from /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:30: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= -[ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 33%] Built target ringengine +make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 33%] Generating qrc_manipulatetool.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name manipulatetool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.qrc +[ 33%] Generating moc_manipulatetool.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx_parameters +[ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5171,9 +5200,8 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:33, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -5181,9 +5209,9 @@ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o +[ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/aligntool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 33%] Linking CXX shared module ../../../lib/hbondengine.so In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5201,17 +5229,12 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 34%] Built target hbondengine -make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 34%] Linking CXX shared module ../../../lib/sphereengine.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1 -[ 34%] Generating qrc_manipulatetool.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name manipulatetool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.qrc -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 34%] Generating moc_manipulatetool.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx_parameters -[ 34%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 33%] Generating ui_manipulatesettingswidget.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/ui_manipulatesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/tools/manipulatesettingswidget.ui +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= +[ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -5229,14 +5252,11 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 34%] Generating ui_manipulatesettingswidget.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/ui_manipulatesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/tools/manipulatesettingswidget.ui -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= Scanning dependencies of target manipulatetool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o +[ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -5255,18 +5275,24 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 34%] Linking CXX shared module ../../../lib/axesengine.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 35%] Built target sphereengine +[ 34%] Linking CXX shared module ../../../lib/stickengine.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 +[ 34%] Built target hbondengine make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 35%] Generating moc_gl2psextension.cxx +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 34%] Generating moc_gl2psextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= Scanning dependencies of target gl2psextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o +[ 35%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -5286,56 +5312,31 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 36%] Linking CXX shared module ../../../lib/ringengine.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 36%] Linking CXX shared module ../../../lib/qtaimengine.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/qtaimengine.so CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 36%] Built target ringengine +[ 35%] Built target axesengine make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 36%] Generating ui_supercelldialog.h +[ 35%] Generating ui_supercelldialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.ui -[ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 36%] Generating moc_supercellextension.cxx +[ 35%] Generating moc_supercellextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx_parameters -[ 36%] Generating moc_supercelldialog.cxx +[ 35%] Generating moc_supercelldialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 36%] Built target qtaimengine +[ 35%] Built target stickengine make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 36%] Generating ui_shaderdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= +[ 35%] Generating ui_shaderdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_shaderdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/shaderdialog.ui -[ 36%] Generating moc_shaderextension.cxx +[ 35%] Generating moc_shaderextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= Scanning dependencies of target supercellextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= -[ 37%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o +[ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/supercellextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -5359,7 +5360,7 @@ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 37%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o +[ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/shaderextension.dir/shaderextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -5379,49 +5380,79 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 38%] Linking CXX shared module ../../../lib/wireengine.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx +[ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 38%] Linking CXX shared module ../../../lib/selectrotatetool.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 36%] Linking CXX shared module ../../../lib/qtaimengine.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/qtaimengine.so CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 38%] Linking CXX shared module ../../../lib/axesengine.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 -[ 38%] Built target wireengine +[ 36%] Built target qtaimengine +[ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 38%] Generating ui_fileimportdialog.h +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:33, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 37%] Generating ui_fileimportdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/fileimportdialog.ui -[ 38%] Generating moc_fileimportextension.cxx +[ 37%] Generating moc_fileimportextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx_parameters -[ 38%] Linking CXX shared module ../../../lib/labelengine.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 38%] Linking CXX shared module ../../../lib/wireengine.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= Scanning dependencies of target fileimportextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build +[ 38%] Linking CXX shared module ../../../lib/labelengine.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1 make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.cpp -[ 39%] Built target selectrotatetool -make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5436,47 +5467,25 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 39%] Built target wireengine +make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 39%] Generating moc_h2methylextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx_parameters -[ 39%] Built target axesengine -make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 39%] Generating ui_molecularpropdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_molecularpropdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/molecularpropdialog.ui -[ 39%] Linking CXX shared module ../../../lib/stickengine.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= -[ 39%] Generating moc_molecularpropextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx_parameters -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' Scanning dependencies of target h2methylextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build -[ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 39%] Built target labelengine +make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.cpp -[ 39%] Built target labelengine -make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend +[ 39%] Generating ui_molecularpropdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_molecularpropdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/molecularpropdialog.ui In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5495,10 +5504,9 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 39%] Generating moc_molecularpropextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= -[ 39%] Generating moc_propextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx_parameters Scanning dependencies of target molecularpropextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build @@ -5522,13 +5530,29 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 39%] Generating __/tools/moc_skeletontree.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/__/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx_parameters -[ 40%] Generating moc_propmodel.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 40%] Building C object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o +[ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 39%] Linking CXX shared module ../../../lib/autorotatetool.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autorotatetool.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autorotatetool.so CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 39%] Building C object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, @@ -5537,18 +5561,37 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 40%] Built target stickengine -make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 39%] Built target autorotatetool +make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 40%] Generating moc_invertchiralextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx_parameters +[ 39%] Generating moc_propextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx_parameters +[ 39%] Generating __/tools/moc_skeletontree.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/__/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx_parameters +[ 40%] Generating moc_propmodel.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx_parameters +[ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= +[ 40%] Linking CXX shared module ../../../lib/selectrotatetool.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU Scanning dependencies of target propextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5563,6 +5606,13 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 40%] Built target selectrotatetool +make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 40%] Generating moc_invertchiralextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= Scanning dependencies of target invertchiralextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build @@ -5586,37 +5636,21 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx +[ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 40%] Linking CXX shared module ../../../lib/autorotatetool.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autorotatetool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autorotatetool.so CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 40%] Built target autorotatetool -make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 40%] Generating qrc_cartesianextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name cartesianextension -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.qrc -[ 40%] Generating moc_cartesianextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx_parameters -[ 40%] Generating ui_cartesianeditor.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_cartesianeditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianeditor.ui -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= -Scanning dependencies of target cartesianextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp +[ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx +[ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5628,26 +5662,12 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp:23: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5656,38 +5676,36 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gl2psextension.h:26, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx:9: + from /usr/include/qt4/QtGui/qundostack.h:45, + from /usr/include/qt4/QtGui/QUndoCommand:1, + from /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:31, + from /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 40%] Linking CXX shared module ../../../lib/clickmeasuretool.so +[ 41%] Linking CXX shared module ../../../lib/clickmeasuretool.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/clickmeasuretool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/clickmeasuretool.so CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp +[ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qundostack.h:45, - from /usr/include/qt4/QtGui/QUndoCommand:1, - from /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:31, - from /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h:12, + from /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx +[ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx +[ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5701,21 +5719,11 @@ from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:26, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/shaderextension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 41%] Built target clickmeasuretool -make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 41%] Generating ui_pythonterminalwidget.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_pythonterminalwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminalwidget.ui -[ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx -[ 41%] Generating moc_pythonterminal.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx_parameters In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5729,13 +5737,19 @@ from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/shaderextension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gl2psextension.h:26, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 41%] Built target clickmeasuretool +make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx +[ 41%] Generating qrc_cartesianextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name cartesianextension -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.qrc In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5747,26 +5761,24 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:26, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 42%] Generating moc_highlighter.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= -[ 42%] Linking CXX shared module ../../../lib/gl2psextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/gl2psextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/gl2psextension.so CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -Scanning dependencies of target pythonterminal +[ 41%] Generating moc_cartesianextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx_parameters +[ 41%] Generating ui_cartesianeditor.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_cartesianeditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianeditor.ui +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= +Scanning dependencies of target cartesianextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build +make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp -[ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx +[ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5780,12 +5792,13 @@ from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp:23: + from /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5803,25 +5816,38 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 42%] Built target gl2psextension -make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 42%] Generating ui_conformersearchdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_conformersearchdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.ui -[ 42%] Generating moc_forcefieldextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx_parameters -[ 42%] Generating moc_forcefielddialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx_parameters -[ 43%] Generating moc_constraintsdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx_parameters +[ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h:12, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 41%] Linking CXX shared module ../../../lib/gl2psextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/gl2psextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/gl2psextension.so CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp: In constructor 'Avogadro::AddBondDrawCommandPrivate::AddBondDrawCommandPrivate()': /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:533:53: warning: conversion from 'long unsigned int' to 'unsigned int' changes value from '18446744073709551615' to '4294967295' [-Woverflow] postCommandEnd(0) {} ^ /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:533:53: warning: conversion from 'long unsigned int' to 'unsigned int' changes value from '18446744073709551615' to '4294967295' [-Woverflow] -[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 41%] Built target gl2psextension +make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 41%] Generating ui_pythonterminalwidget.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_pythonterminalwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminalwidget.ui +[ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5834,36 +5860,44 @@ from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/invertchiralextension.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 44%] Generating moc_constraintsmodel.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx_parameters -[ 44%] Linking CXX shared module ../../../lib/h2methylextension.so -[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1 -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 42%] Generating moc_pythonterminal.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx_parameters +[ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h:12, - from /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp:20: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercellextension.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 44%] Generating moc_conformersearchdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx_parameters -[ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o +[ 43%] Generating moc_highlighter.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= +[ 43%] Linking CXX shared module ../../../lib/shaderextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/shaderextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/shaderextension.so CMakeFiles/shaderextension.dir/shaderextension.cpp.o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lGLEW +[ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx +Scanning dependencies of target pythonterminal +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5873,30 +5907,9 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 44%] Linking CXX shared module ../../../lib/shaderextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/shaderextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/shaderextension.so CMakeFiles/shaderextension.dir/shaderextension.cpp.o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lGLEW -[ 44%] Generating ui_forcefielddialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_forcefielddialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.ui -[ 44%] Generating ui_constraintsdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_constraintsdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.ui -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= -[ 44%] Linking CXX shared module ../../../lib/aligntool.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 44%] Built target h2methylextension -make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 44%] Generating moc_selectextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx_parameters -Scanning dependencies of target forcefieldextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp +[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5904,42 +5917,79 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp:23: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target selectextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build -[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 43%] Linking CXX shared module ../../../lib/aligntool.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 +[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx +[ 44%] Linking CXX shared module ../../../lib/h2methylextension.so In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h:12, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp [ 44%] Built target shaderextension +make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 44%] Generating ui_conformersearchdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_conformersearchdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.ui +[ 44%] Generating moc_forcefieldextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx_parameters +[ 44%] Generating moc_forcefielddialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx_parameters +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 44%] Built target h2methylextension +make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 45%] Generating moc_constraintsdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx_parameters +[ 45%] Generating moc_selectextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 45%] Built target aligntool make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 45%] Generating ui_insertpeptidedialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_insertpeptidedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptidedialog.ui +[ 45%] Generating moc_insertpeptideextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx_parameters +Scanning dependencies of target selectextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build +[ 45%] Generating moc_constraintsmodel.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx_parameters +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5958,37 +6008,30 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 44%] Generating ui_insertpeptidedialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_insertpeptidedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptidedialog.ui -[ 44%] Generating moc_insertpeptideextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx_parameters -[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx +[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/invertchiralextension.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx:9: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h:12, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercelldialog.h:23, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertpeptideextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build +[ 45%] Generating moc_conformersearchdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx_parameters make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.cpp -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6007,35 +6050,11 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 45%] Built target aligntool -make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 45%] Generating moc_hydrogensextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= -Scanning dependencies of target hydrogensextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ +[ 45%] Generating ui_forcefielddialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_forcefielddialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.ui +[ 45%] Generating ui_constraintsdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_constraintsdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.ui +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= [ 45%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -6055,56 +6074,12 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercellextension.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/cmath:41, - from /usr/include/c++/8/math.h:36, - from /usr/include/openbabel-2.0/openbabel/mol.h:31, - from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 45%] Linking CXX shared module ../../../lib/molecularpropextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork +Scanning dependencies of target forcefieldextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 45%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp -[ 45%] Built target molecularpropextension -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/new:39, - from /usr/include/eigen3/Eigen/Core:82, - from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, - from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 45%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp +make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6112,44 +6087,22 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qundostack.h:45, - from /usr/include/qt4/QtGui/QUndoCommand:1, - from /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:30, - from /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 45%] Linking CXX shared module ../../../lib/fileimportextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileimportextension.dir/link.txt --verbose=1 +[ 45%] Linking CXX shared module ../../../lib/invertchiralextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/invertchiralextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/fileimportextension.so CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 45%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h:12, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercelldialog.h:23, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/invertchiralextension.so CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -6161,20 +6114,35 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 46%] Linking CXX shared module ../../../lib/drawtool.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 46%] Linking CXX shared module ../../../lib/autoopttool.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 46%] Built target invertchiralextension +make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 46%] Built target fileimportextension make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend +[ 46%] Generating moc_hydrogensextension.cxx make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx_parameters [ 46%] Generating ui_insertdnadialog.h -[ 46%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_insertdnadialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnadialog.ui -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx +[ 46%] Generating moc_insertdnaextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= +[ 46%] Linking CXX shared module ../../../lib/autoopttool.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +Scanning dependencies of target hydrogensextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build +Scanning dependencies of target insertdnaextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6186,21 +6154,12 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 46%] Generating moc_insertdnaextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= -[ 46%] Linking CXX shared module ../../../lib/invertchiralextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/invertchiralextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/invertchiralextension.so CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Scanning dependencies of target insertdnaextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -6221,38 +6180,35 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 46%] Built target drawtool -[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/cartesianextension.h:26, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 47%] Generating moc_networkfetchextension.cxx +[ 46%] Linking CXX shared module ../../../lib/supercellextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 46%] Built target autoopttool +make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 46%] Generating moc_networkfetchextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= +[ 46%] Linking CXX shared module ../../../lib/drawtool.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU Scanning dependencies of target networkfetchextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o +[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/networkfetchextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -6273,72 +6229,49 @@ # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 47%] Built target autoopttool +[ 46%] Built target supercellextension make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 47%] Generating qrc_animationextension.cxx +[ 46%] Generating qrc_animationextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name animationextension -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.qrc -[ 47%] Generating moc_animationextension.cxx +[ 46%] Generating moc_animationextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx_parameters +[ 46%] Generating moc_animationdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx_parameters +[ 46%] Linking CXX shared module ../../../lib/molecularpropextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 47%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx -[ 47%] Built target invertchiralextension +[ 47%] Generating ui_animationdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_animationdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.ui +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork +[ 47%] Built target drawtool make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ [ 47%] Generating ui_povraydialog.h -[ 47%] Generating moc_animationdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_povraydialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.ui -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx_parameters +[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp [ 47%] Generating moc_povrayextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx_parameters -[ 48%] Generating ui_animationdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_animationdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.ui -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= -[ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: + from /usr/include/c++/8/cmath:41, + from /usr/include/c++/8/math.h:36, + from /usr/include/openbabel-2.0/openbabel/mol.h:31, + from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 49%] Generating moc_povraydialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx_parameters Scanning dependencies of target animationextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o +[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.cpp +[ 48%] Generating moc_povraydialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx_parameters In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6358,14 +6291,19 @@ # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= -[ 49%] Linking CXX shared module ../../../lib/supercellextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 48%] Built target molecularpropextension +make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 48%] Generating ui_insertfragmentdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_insertfragmentdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.ui +[ 48%] Generating moc_insertfragmentextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters Scanning dependencies of target povrayextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o +[ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povrayextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -6384,24 +6322,16 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 49%] Built target supercellextension -make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 49%] Generating ui_insertfragmentdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_insertfragmentdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.ui -[ 49%] Generating moc_insertfragmentextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters -[ 50%] Generating moc_insertfragmentdialog.cxx +[ 49%] Generating moc_insertfragmentdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx_parameters -[ 50%] Generating moc_sortfiltertreeproxymodel.cxx +[ 49%] Generating moc_sortfiltertreeproxymodel.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertfragmentextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o +[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -6421,9 +6351,74 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 50%] Linking CXX shared module ../../../lib/cartoonengine.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 49%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 49%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/new:39, + from /usr/include/eigen3/Eigen/Core:82, + from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, + from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/cartesianextension.h:26, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -6444,48 +6439,52 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 50%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx +[ 50%] Linking CXX shared module ../../../lib/hydrogensextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogensextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hydrogensextension.so CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp +[ 50%] Linking CXX shared module ../../../lib/cartoonengine.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 50%] Built target cartoonengine +[ 50%] Built target hydrogensextension make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 50%] Generating ui_vrmldialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_vrmldialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui: Warning: Buddy assignment: 'dimX' is not a valid widget. -[ 50%] Linking CXX shared module ../../../lib/hydrogensextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogensextension.dir/link.txt --verbose=1 +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx [ 50%] Generating moc_vrmlextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx_parameters -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hydrogensextension.so CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qundostack.h:45, - from /usr/include/qt4/QtGui/QUndoCommand:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6493,55 +6492,59 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp:22: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/networkfetchextension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 50%] Linking CXX shared module ../../../lib/selectextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 50%] Generating moc_vrmldialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx_parameters -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, - from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp:19: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtGui/qundostack.h:45, + from /usr/include/qt4/QtGui/QUndoCommand:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 50%] Built target cartoonengine +make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ +[ 51%] Generating ui_symmetrydialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/ui_symmetrydialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetrydialog.ui +[ 51%] Linking CXX shared module ../../../lib/cartesianextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartesianextension.dir/link.txt --verbose=1 +[ 51%] Generating moc_symmetryextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx_parameters +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartesianextension.so CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel Scanning dependencies of target vrmlextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 50%] Built target hydrogensextension -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o -make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend +[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o +[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.cpp -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6559,29 +6562,32 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Generating ui_symmetrydialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/ui_symmetrydialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetrydialog.ui In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/bits/stl_algobase.h:59, - from /usr/include/c++/8/vector:60, - from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtGui/qundostack.h:45, + from /usr/include/qt4/QtGui/QUndoCommand:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Generating moc_symmetryextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= -[ 51%] Linking CXX shared module ../../../lib/cartesianextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartesianextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartesianextension.so CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' Scanning dependencies of target symmetryextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build +[ 51%] Built target selectextension +make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 51%] Generating ui_ceviewoptionswidget.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceviewoptionswidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.ui [ 51%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -6601,88 +6607,97 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 51%] Built target cartesianextension -make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 51%] Generating ui_ceviewoptionswidget.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceviewoptionswidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.ui [ 52%] Generating moc_crystallographyextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx_parameters +[ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp:22: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 52%] Generating moc_crystalpastedialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx_parameters +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 52%] Built target cartesianextension +make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 52%] Generating ui_tab_cd.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_cd.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_cd.ui +[ 52%] Generating moc_spectraextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx_parameters [ 52%] Generating ui/moc_ceabstractdockwidget.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx_parameters [ 52%] Generating ui/moc_ceabstracteditor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx_parameters +[ 52%] Generating moc_spectradialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx_parameters [ 52%] Generating ui/moc_cecoordinateeditor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx_parameters -[ 52%] Generating ui/moc_cematrixeditor.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx_parameters -[ 52%] Generating ui/moc_ceparametereditor.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx_parameters -[ 52%] Linking CXX shared module ../../../lib/selectextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1 -[ 52%] Generating ui/moc_ceslabbuilder.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx_parameters -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx +[ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:30, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx:9: + from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, + from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 52%] Generating ui/moc_cetranslatewidget.cxx +[ 52%] Generating ui/moc_cematrixeditor.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx_parameters +[ 52%] Generating moc_spectratype.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx_parameters +[ 52%] Generating ui/moc_ceparametereditor.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx_parameters +[ 53%] Generating moc_abstract_ir.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx_parameters +[ 53%] Generating ui/moc_ceslabbuilder.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx_parameters +[ 54%] Linking CXX shared module ../../../lib/networkfetchextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/networkfetchextension.dir/link.txt --verbose=1 +[ 54%] Generating ui/moc_cetranslatewidget.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx_parameters -[ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/bits/stl_algobase.h:59, - from /usr/include/c++/8/vector:60, - from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 54%] Generating ui/moc_ceviewoptionswidget.cxx +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork +[ 54%] Generating moc_ir.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx_parameters +[ 55%] Generating ui/moc_ceviewoptionswidget.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx_parameters -[ 54%] Generating ui_crystalpastedialog.h +[ 55%] Generating moc_nmr.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx_parameters +[ 55%] Generating ui_crystalpastedialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_crystalpastedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.ui -[ 54%] Generating ui_cecoordinateeditor.h +[ 55%] Generating ui_cecoordinateeditor.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_cecoordinateeditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.ui -[ 54%] Generating ui_cematrixeditor.h +[ 55%] Generating ui_cematrixeditor.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_cematrixeditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.ui -[ 54%] Generating ui_ceparametereditor.h +[ 55%] Generating ui_ceparametereditor.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceparametereditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.ui -[ 54%] Generating ui_ceslabbuilder.h +[ 55%] Generating moc_dos.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx_parameters +[ 55%] Generating ui_ceslabbuilder.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceslabbuilder.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.ui -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp -[ 54%] Generating ui_cetranslatewidget.h +[ 55%] Generating ui_cetranslatewidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_cetranslatewidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.ui -[ 54%] Built target selectextension -make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6690,37 +6705,59 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp -[ 54%] Generating ui_tab_cd.h +[ 55%] Generating moc_uv.cxx +[ 55%] Built target networkfetchextension +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx_parameters +make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 55%] Generating ui_vibrationwidget.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_vibrationwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.ui +[ 55%] Generating moc_vibrationextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx_parameters +[ 55%] Generating moc_cd.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx_parameters +[ 55%] Generating moc_vibrationwidget.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx_parameters +Scanning dependencies of target crystallographyextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build +[ 55%] Generating moc_raman.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx_parameters +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 55%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/avospglib.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/avospglib.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qundostack.h:45, - from /usr/include/qt4/QtGui/QUndoCommand:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: + from /usr/include/c++/8/new:39, + from /usr/include/eigen3/Eigen/Core:82, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_cd.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_cd.ui -[ 54%] Generating moc_spectraextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx_parameters -[ 54%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= +[ 55%] Generating ui_spectradialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_spectradialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.ui +[ 55%] Generating ui_tab_ir_raman.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_ir_raman.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_ir_raman.ui +[ 56%] Generating ui_tab_nmr.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_nmr.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_nmr.ui +Scanning dependencies of target vibrationextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o +make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp +[ 56%] Generating ui_tab_dos.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_dos.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_dos.ui In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6729,16 +6766,20 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, - from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 54%] Generating moc_spectradialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx_parameters -[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 56%] Generating ui_tab_uv.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_uv.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_uv.ui +[ 57%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6746,42 +6787,40 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/networkfetchextension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 54%] Generating moc_spectratype.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx_parameters -Scanning dependencies of target crystallographyextension +Scanning dependencies of target spectraextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build +make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 54%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/avospglib.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/avospglib.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp -[ 55%] Generating moc_abstract_ir.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx_parameters +[ 57%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectraextension.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectraextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/new:39, - from /usr/include/eigen3/Eigen/Core:82, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp:18: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 55%] Generating moc_ir.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx_parameters -[ 55%] Generating moc_nmr.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx_parameters -[ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp +[ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/povpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6789,24 +6828,17 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp:22: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 55%] Generating moc_dos.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx_parameters -[ 55%] Generating moc_uv.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx_parameters -[ 55%] Generating moc_cd.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx_parameters -[ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o +[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp -[ 56%] Generating moc_raman.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6823,11 +6855,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx_parameters -[ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx -[ 56%] Generating ui_spectradialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_spectradialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.ui +[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6841,65 +6870,27 @@ from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertpeptideextension.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:30, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 56%] Generating ui_tab_ir_raman.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_ir_raman.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_ir_raman.ui -[ 57%] Generating ui_tab_nmr.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_nmr.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_nmr.ui -[ 57%] Generating ui_tab_dos.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_dos.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_dos.ui -[ 57%] Generating ui_tab_uv.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_uv.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_uv.ui -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= -[ 58%] Linking CXX shared module ../../../lib/networkfetchextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/networkfetchextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork -Scanning dependencies of target spectraextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 58%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectraextension.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectraextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp +[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp:19: + from /usr/include/c++/8/bits/stl_algobase.h:59, + from /usr/include/c++/8/vector:60, + from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 58%] Built target networkfetchextension -make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 58%] Generating ui_vibrationwidget.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_vibrationwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.ui -[ 58%] Generating moc_vibrationextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx_parameters -[ 58%] Generating moc_vibrationwidget.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= -Scanning dependencies of target vibrationextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 58%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx -[ 59%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp +[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6911,12 +6902,17 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/../../../../../libavogadro/src/extensions/symmetry/symmetryextension.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertdnaextension.h:22, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 58%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp +[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6924,17 +6920,13 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp:23: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, + from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6942,33 +6934,19 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 59%] Linking CXX shared module ../../../lib/insertpeptideextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1 -[ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/cmath:41, - from /usr/include/c++/8/math.h:36, - from /usr/include/openbabel-2.0/openbabel/mol.h:31, - from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp:23: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertpeptideextension.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/povpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp +[ 58%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6980,28 +6958,56 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/../../../../../libavogadro/src/extensions/symmetry/symmetryextension.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 58%] Linking CXX shared module ../../../lib/insertdnaextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertdnaextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertdnaextension.so CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/cmath:41, + from /usr/include/c++/8/math.h:36, + from /usr/include/openbabel-2.0/openbabel/mol.h:31, + from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 59%] Built target insertpeptideextension +[ 58%] Built target insertdnaextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 60%] Generating ui_orbitalsettingsdialog.h +[ 59%] Generating ui_orbitalsettingsdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalsettingsdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.ui -[ 60%] Generating moc_orbitalextension.cxx +[ 59%] Generating moc_orbitalextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx_parameters -[ 60%] Generating moc_orbitalsettingsdialog.cxx +[ 59%] Generating moc_orbitalsettingsdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx_parameters -[ 60%] Linking CXX shared module ../../../lib/manipulatetool.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx -[ 60%] Generating moc_orbitaltablemodel.cxx +[ 59%] Generating moc_orbitaltablemodel.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx_parameters +[ 59%] Generating moc_orbitalwidget.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx_parameters +[ 59%] Generating moc_vdwsurface.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx_parameters +[ 59%] Generating qtiocompressor/moc_qtiocompressor.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx_parameters +[ 59%] Generating moc_htmldelegate.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx_parameters +[ 59%] Linking CXX shared module ../../../lib/insertpeptideextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 59%] Generating ui_orbitalwidget.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.ui +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= +[ 59%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectradialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectradialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7009,21 +7015,21 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertdnaextension.h:22, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 60%] Generating moc_orbitalwidget.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx_parameters -[ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp +Scanning dependencies of target orbitalextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build +[ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7032,36 +7038,14 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:25: + from /usr/include/qt4/QtGui/qundostack.h:45, + from /usr/include/qt4/QtGui/QUndoCommand:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 60%] Generating moc_vdwsurface.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx_parameters -[ 60%] Generating qtiocompressor/moc_qtiocompressor.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx_parameters -[ 60%] Generating moc_htmldelegate.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx_parameters -[ 60%] Generating ui_orbitalwidget.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.ui -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 60%] Built target manipulatetool -make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 60%] Generating ui_surfacedialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/ui_surfacedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.ui -[ 60%] Generating moc_surfaceextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx_parameters -Scanning dependencies of target orbitalextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 60%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o +[ 59%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -7082,14 +7066,19 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 60%] Generating moc_surfacedialog.cxx +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 59%] Built target insertpeptideextension +make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 59%] Generating ui_surfacedialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/ui_surfacedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.ui +[ 59%] Generating moc_surfaceextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx_parameters +[ 59%] Generating moc_surfacedialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx_parameters -[ 60%] Linking CXX shared module ../../../lib/insertdnaextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertdnaextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertdnaextension.so CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= -[ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx +[ 59%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ceundo.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7099,11 +7088,14 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -7111,7 +7103,7 @@ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 60%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o +[ 59%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -7130,24 +7122,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 60%] Built target insertdnaextension -make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 60%] Generating ui_swcntbuilderwidget.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/ui_swcntbuilderwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.ui -[ 60%] Generating moc_swcntbuilderextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx_parameters -[ 60%] Generating moc_swcntbuilderwidget.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx_parameters -[ 60%] Generating moc_avotubegen.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= -[ 60%] Linking CXX shared module ../../../../lib/symmetryextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/cmake -E cmake_link_script CMakeFiles/symmetryextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/symmetryextension.so CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU libmsym/libmsym.a -[ 60%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectradialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectradialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp +[ 59%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7155,20 +7131,19 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp:20: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtGui/qundostack.h:45, + from /usr/include/qt4/QtGui/QUndoCommand:1, + from /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:30, + from /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp -Scanning dependencies of target swcntbuilderextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build +[ 59%] Linking CXX shared module ../../../../lib/symmetryextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/cmake -E cmake_link_script CMakeFiles/symmetryextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/symmetryextension.so CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU libmsym/libmsym.a +[ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7178,22 +7153,46 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp:19: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 59%] Built target symmetryextension +make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 59%] Generating ui_swcntbuilderwidget.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/ui_swcntbuilderwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.ui +[ 59%] Generating moc_swcntbuilderextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx_parameters +[ 59%] Generating moc_swcntbuilderwidget.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx_parameters +[ 59%] Generating moc_avotubegen.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= +Scanning dependencies of target swcntbuilderextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp [ 61%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/bits/stl_algobase.h:59, + from /usr/include/c++/8/vector:60, + from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, @@ -7207,19 +7206,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 61%] Built target symmetryextension -make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 61%] Generating moc_qtaimextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= -Scanning dependencies of target qtaimextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 61%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp +[ 61%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7227,19 +7215,16 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp:25: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 61%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx +[ 61%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7248,28 +7233,37 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx:9: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 61%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx +[ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, - from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/highlighter.h:22, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:32: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 61%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o +[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -7285,25 +7279,26 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 61%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp +[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qundostack.h:45, - from /usr/include/qt4/QtGui/QUndoCommand:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, + from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, + from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, + from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 61%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx +[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7315,47 +7310,27 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 61%] Linking CXX shared module ../../../lib/pythonterminal.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/pythonterminal.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/pythonterminal.so CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o CMakeFiles/pythonterminal.dir/highlighter.cpp.o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lpython2.7 -[ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp +[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:32: + from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, + from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/highlighter.h:22, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 62%] Built target pythonterminal -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 62%] Generating ui_gamessefpmatchdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessefpmatchdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.ui -[ 62%] Generating moc_inputdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx_parameters -[ 62%] Generating moc_gamessextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx_parameters -[ 62%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp +[ 62%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7364,54 +7339,34 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp:18: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 63%] Generating moc_gamessinputdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx_parameters -[ 63%] Generating moc_gamesshighlighter.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx_parameters -[ 63%] Generating moc_gamessefpmatchdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx_parameters -[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/cmath:41, - from /usr/include/c++/8/math.h:36, - from /usr/include/openbabel-2.0/openbabel/mol.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx:9: + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx -[ 63%] Generating ui_gamessinputdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.ui +[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/bits/stl_algobase.h:59, - from /usr/include/c++/8/vector:60, - from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povrayextension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= -Scanning dependencies of target gamessextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 63%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/inputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp +[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7423,31 +7378,26 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentextension.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx +[ 62%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp +[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7455,17 +7405,18 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp:25: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp +[ 62%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7477,41 +7428,30 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/bits/stl_algobase.h:59, - from /usr/include/c++/8/vector:60, - from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp +[ 62%] Linking CXX shared module ../../../lib/manipulatetool.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp:23: + from /usr/include/c++/8/cmath:41, + from /usr/include/c++/8/math.h:36, + from /usr/include/openbabel-2.0/openbabel/mol.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o +[ 62%] Linking CXX shared module ../../../lib/pythonterminal.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/pythonterminal.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/pythonterminal.so CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o CMakeFiles/pythonterminal.dir/highlighter.cpp.o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lpython2.7 +[ 62%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -7529,26 +7469,38 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 62%] Built target manipulatetool +make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 62%] Generating moc_qtaimextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx_parameters +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 62%] Built target pythonterminal +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend +[ 62%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, - from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, - from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, - from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp:19: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp +[ 62%] Generating ui_gamessefpmatchdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessefpmatchdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.ui +[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7560,26 +7512,41 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp:25: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmlextension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx +[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= +[ 62%] Generating moc_inputdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx_parameters In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp -[ 63%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp +[ 62%] Generating moc_gamessextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx_parameters +Scanning dependencies of target qtaimextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 62%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7591,29 +7558,46 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp:22: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 63%] Generating moc_gamessinputdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx_parameters +[ 63%] Generating moc_gamesshighlighter.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx_parameters +[ 63%] Generating moc_gamessefpmatchdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx_parameters +[ 63%] Generating ui_gamessinputdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.ui +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= +[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qalgorithms.h:45, - from /usr/include/qt4/QtCore/qdebug.h:45, - from /usr/include/qt4/QtCore/QDebug:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp:25: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentdialog.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Linking CXX shared module ../../../lib/bondcentrictool.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 63%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp +Scanning dependencies of target gamessextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 63%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/inputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7621,18 +7605,19 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp:20: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx +[ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7640,19 +7625,17 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentextension.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationextension.h:26, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessextension.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp +[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7664,22 +7647,13 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp:23: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 63%] Built target bondcentrictool -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 63%] Generating ui_lammpsinputdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_lammpsinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.ui -[ 63%] Generating moc_inputfileextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx_parameters -[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx +[ 63%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7687,22 +7661,15 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmlextension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Generating moc_abinitinputdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx_parameters -[ 64%] Generating moc_daltoninputdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx_parameters -[ 64%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx +[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7714,59 +7681,53 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povrayextension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Generating moc_gamessukinputdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx_parameters -[ 64%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx -[ 64%] Generating moc_gaussianinputdialog.cxx +[ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/cmath:41, - from /usr/include/c++/8/math.h:36, - from /usr/include/openbabel-2.0/openbabel/mol.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx:9: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx_parameters -[ 64%] Generating moc_molproinputdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx_parameters -[ 64%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx +[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, + from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, + from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, + from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Generating moc_mopacinputdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx_parameters -[ 64%] Generating moc_nwcheminputdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx_parameters -[ 64%] Generating moc_psi4inputdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx_parameters -[ 64%] Generating moc_qcheminputdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx_parameters -[ 64%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx +[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7778,42 +7739,15 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentdialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationextension.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Generating moc_teracheminputdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx_parameters -[ 65%] Generating moc_lammpsinputdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx_parameters -[ 65%] Generating ui_abinitinputdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_abinitinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.ui -[ 65%] Generating ui_gaussianinputdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gaussianinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.ui -[ 65%] Generating ui_daltoninputdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_daltoninputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.ui -[ 65%] Generating ui_gamessukinputdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessukinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.ui -[ 65%] Generating ui_molproinputdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_molproinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.ui -[ 65%] Generating ui_mopacinputdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_mopacinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.ui -[ 65%] Generating ui_nwcheminputdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_nwcheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.ui -[ 65%] Generating ui_psi4inputdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_psi4inputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.ui -[ 66%] Generating ui_qcheminputdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_qcheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.ui -[ 66%] Generating ui_teracheminputdialog.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_teracheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.ui -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= -Scanning dependencies of target inputfileextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build -[ 66%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 63%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7821,15 +7755,18 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp:18: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 66%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp +[ 63%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessextension.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7837,66 +7774,83 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp:25: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 66%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx -[ 66%] Generating ui_orcaspectra.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.ui +[ 64%] Linking CXX shared module ../../../lib/insertfragmentextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 64%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx +[ 64%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/cmath:41, + from /usr/include/c++/8/math.h:36, + from /usr/include/openbabel-2.0/openbabel/mol.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationextension.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 66%] Generating moc_orcaextension.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx_parameters -[ 66%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx -[ 66%] Generating moc_orcainputdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx_parameters +[ 64%] Linking CXX shared module ../../../lib/bondcentrictool.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 64%] Linking CXX shared module ../../../lib/povrayextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 64%] Built target insertfragmentextension +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 64%] Generating ui_lammpsinputdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_lammpsinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.ui +[ 64%] Generating moc_inputfileextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx_parameters +[ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx +[ 64%] Linking CXX shared module ../../../lib/vrmlextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/vrmlextension.dir/link.txt --verbose=1 +[ 65%] Generating moc_abinitinputdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx_parameters In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, - from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, - from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, - from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 66%] Generating moc_orcaanalysedialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx_parameters -[ 66%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/vrmlextension.so CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 65%] Generating moc_daltoninputdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx_parameters +[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7908,13 +7862,25 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationdialog.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp +[ 65%] Generating moc_gamessukinputdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx_parameters +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 65%] Built target povrayextension +make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 65%] Generating moc_gaussianinputdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx_parameters +[ 65%] Generating ui_orcaspectra.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.ui +[ 65%] Generating moc_orcaextension.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx_parameters +[ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7923,22 +7889,46 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp:20: + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 67%] Generating moc_orcaspectra.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx_parameters -[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx +[ 65%] Generating moc_molproinputdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx_parameters +[ 65%] Generating moc_orcainputdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx_parameters +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 65%] Built target bondcentrictool +make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 65%] Built target vrmlextension +make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 65%] Generating moc_smartscolor.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx_parameters +[ 65%] Generating moc_customcolor.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx_parameters +[ 65%] Generating moc_mopacinputdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= +[ 65%] Generating moc_orcaanalysedialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx_parameters +Scanning dependencies of target customcolor +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +Scanning dependencies of target smartscolor +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build +[ 65%] Generating moc_nwcheminputdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx_parameters +[ 65%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/customcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7946,25 +7936,40 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.h:28, + from /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 67%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp +[ 65%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/smartscolor.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/smartscolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/cmath:41, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:25: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.h:28, + from /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 67%] Generating ui_orcainputdialog.h +[ 66%] Generating moc_orcaspectra.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx_parameters +[ 66%] Generating moc_psi4inputdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx_parameters +[ 66%] Generating moc_qcheminputdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx_parameters +[ 66%] Generating ui_orcainputdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcainputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget2'. @@ -7977,15 +7982,23 @@ /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget9'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget10'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget11'. -[ 67%] Generating ui_orcaanalysedialog.h +[ 66%] Generating ui_orcaanalysedialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcaanalysedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.ui /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= -[ 68%] Linking CXX shared module ../../../lib/insertfragmentextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx +[ 66%] Generating moc_teracheminputdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx_parameters +[ 67%] Generating moc_lammpsinputdialog.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx_parameters +[ 67%] Generating ui_abinitinputdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_abinitinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.ui +Scanning dependencies of target orcaextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build +[ 67%] Generating ui_gaussianinputdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gaussianinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.ui +[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7995,19 +8008,21 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationextension.h:26, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx:9: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target orcaextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build +[ 67%] Generating ui_daltoninputdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_daltoninputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.ui make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 68%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaextension.cpp.o +[ 67%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaextension.cpp.o +[ 67%] Generating ui_gamessukinputdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessukinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.ui In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8024,8 +8039,21 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp +[ 67%] Generating ui_molproinputdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_molproinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.ui +[ 67%] Generating ui_mopacinputdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_mopacinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.ui +[ 67%] Generating ui_nwcheminputdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_nwcheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.ui +[ 67%] Generating ui_psi4inputdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_psi4inputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.ui +[ 68%] Generating ui_qcheminputdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_qcheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.ui +[ 68%] Generating ui_teracheminputdialog.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_teracheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.ui +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= +[ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8033,26 +8061,31 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +Scanning dependencies of target inputfileextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 68%] Built target insertfragmentextension -make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 68%] Generating moc_smartscolor.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= -Scanning dependencies of target smartscolor -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build +[ 68%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 68%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/smartscolor.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/smartscolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp +[ 68%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8064,13 +8097,17 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.h:28, - from /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp:25: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 68%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx +[ 69%] Linking CXX shared module ../../../lib/animationextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8078,20 +8115,15 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationdialog.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 68%] Linking CXX shared module ../../../lib/propextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectratype.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp +[ 69%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8099,63 +8131,31 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp:21: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/customcolor.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 68%] Linking CXX shared module ../../../lib/forcefieldextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 68%] Linking CXX shared module ../../../lib/vrmlextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/vrmlextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/vrmlextension.so CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 68%] Linking CXX shared module ../../../lib/povrayextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 68%] Built target propextension -make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 68%] Generating moc_customcolor.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx_parameters -[ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx +[ 69%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx:9: + from /usr/include/qt4/QtCore/qalgorithms.h:45, + from /usr/include/qt4/QtCore/qdebug.h:45, + from /usr/include/qt4/QtCore/QDebug:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 68%] Built target forcefieldextension -make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 68%] Generating moc_chargecolor.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx_parameters -Scanning dependencies of target customcolor -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 68%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/customcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 69%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectratype.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8163,28 +8163,31 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.h:28, - from /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp:25: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp:21: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 68%] Built target vrmlextension -Scanning dependencies of target chargecolor -make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 69%] Built target animationextension +make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 69%] Generating moc_chargecolor.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx_parameters +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= +Scanning dependencies of target chargecolor +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 68%] Generating ui_residuecolorsettings.h -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/ui_residuecolorsettings.h /build/avogadro-1.2.0/libavogadro/src/colors/residuecolorsettings.ui -[ 69%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o +[ 69%] Linking CXX shared module ../../../../lib/vibrationextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1 +[ 70%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/chargecolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/chargecolor.cpp -[ 69%] Generating moc_residuecolor.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx_parameters +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/vibrationextension.so CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8201,12 +8204,26 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 70%] Linking CXX shared module ../../../lib/propextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1 +[ 70%] Linking CXX shared module ../../../lib/customcolor.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/customcolor.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/customcolor.so CMakeFiles/customcolor.dir/customcolor.cpp.o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 70%] Built target vibrationextension +make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 70%] Generating ui_residuecolorsettings.h +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/ui_residuecolorsettings.h /build/avogadro-1.2.0/libavogadro/src/colors/residuecolorsettings.ui +[ 70%] Generating moc_residuecolor.cxx +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= Scanning dependencies of target residuecolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 69%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o +[ 70%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/residuecolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/residuecolor.cpp make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -8225,28 +8242,17 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 69%] Built target povrayextension +[ 70%] Built target customcolor make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 69%] Generating moc_atomindexcolor.cxx +[ 70%] Generating moc_atomindexcolor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx_parameters -[ 69%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ Scanning dependencies of target atomindexcolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 69%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o +[ 70%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -8264,47 +8270,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 70%] Linking CXX shared module ../../../lib/animationextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 70%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 70%] Built target animationextension +[ 70%] Built target propextension make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 70%] Generating moc_distancecolor.cxx @@ -8316,7 +8283,6 @@ make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 70%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/distancecolor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/distancecolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/distancecolor.cpp -[ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8333,22 +8299,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp:19: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ [ 70%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -8367,8 +8317,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 70%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp +[ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8377,18 +8327,18 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/QIODevice:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 70%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx +[ 71%] Linking CXX shared module ../../../lib/smartscolor.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/smartscolor.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/smartscolor.so CMakeFiles/smartscolor.dir/smartscolor.cpp.o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 71%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8396,17 +8346,17 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/customcolor.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 70%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx +[ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8416,16 +8366,13 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 70%] Linking CXX shared module ../../../lib/smartscolor.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/smartscolor.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/smartscolor.so CMakeFiles/smartscolor.dir/smartscolor.cpp.o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 70%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx +[ 71%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8433,17 +8380,20 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/chargecolor.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/abstract_ir.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp +[ 71%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx +[ 71%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8451,22 +8401,15 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp:21: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 70%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx -[ 70%] Built target smartscolor -make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8478,19 +8421,19 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/atomindexcolor.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/chargecolor.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 70%] Generating moleculelist.moc +[ 71%] Built target smartscolor +make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 71%] Generating moleculelist.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python/moleculelist.moc_parameters -[ 70%] Linking CXX shared module ../../../lib/customcolor.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/customcolor.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/customcolor.so CMakeFiles/customcolor.dir/customcolor.cpp.o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/python /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= -[ 70%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp +[ 71%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8498,34 +8441,20 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp:23: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/atomindexcolor.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 70%] Linking CXX shared module ../../../../lib/swcntbuilderextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/cmake -E cmake_link_script CMakeFiles/swcntbuilderextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/swcntbuilderextension.so CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU tubegen/libtubegen.a -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 70%] Built target customcolor -make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' Scanning dependencies of target python-module make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build -[ 70%] Generating avogadro_zh_TW.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/zh_TW.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.ts -[ 70%] Linking CXX shared module ../../../lib/chargecolor.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/chargecolor.dir/link.txt --verbose=1 -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/chargecolor.so CMakeFiles/chargecolor.dir/chargecolor.cpp.o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 71%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/animation.cpp.o +[ 72%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/animation.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/animation.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/animation.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, @@ -8537,11 +8466,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.qm -[ 71%] Generating aboutdialog.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/aboutdialog.moc_parameters -[ 72%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp +[ 72%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8549,26 +8475,30 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/QIODevice:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfaceextension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 72%] Generating addenginedialog.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/addenginedialog.moc_parameters -[ 72%] Generating application.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/application.moc_parameters -[ 72%] Generating detachedview.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/detachedview.moc_parameters -[ 72%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 72%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp +[ 72%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/cmath:41, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:25: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 72%] Linking CXX shared module ../../../lib/atomindexcolor.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/atomindexcolor.dir/link.txt --verbose=1 +[ 72%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/abstract_ir.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/atomindexcolor.so CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8580,15 +8510,17 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp:21: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 72%] Generating enginecolorswidget.moc -[ 72%] Built target swcntbuilderextension -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/enginecolorswidget.moc_parameters -[ 72%] Built target chargecolor +[ 72%] Linking CXX shared module ../../../lib/chargecolor.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/chargecolor.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/chargecolor.so CMakeFiles/chargecolor.dir/chargecolor.cpp.o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 72%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8596,21 +8528,39 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/qprocess.h:45, - from /usr/include/qt4/QtCore/QProcess:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp:26: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 72%] Generating engineitemmodel.moc -[ 73%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -[ 73%] Generating engineitemdelegate.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/engineitemmodel.moc_parameters -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/engineitemdelegate.moc_parameters +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o +[ 72%] Built target atomindexcolor +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx +make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/bits/stl_algobase.h:59, + from /usr/include/c++/8/vector:60, + from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 72%] Generating avogadro_zh_TW.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/zh_TW.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.ts +[ 72%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8622,15 +8572,18 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/residuecolor.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/distancecolor.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Generating enginelistview.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/enginelistview.moc_parameters -[ 74%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.qm +[ 72%] Built target chargecolor +[ 72%] Generating aboutdialog.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/aboutdialog.moc_parameters +[ 72%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8645,68 +8598,74 @@ from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp:10: + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Generating engineprimitiveswidget.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/engineprimitiveswidget.moc_parameters -[ 74%] Generating flattabwidget.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/flattabwidget.moc_parameters -[ 74%] Linking CXX shared module ../../../lib/atomindexcolor.so -[ 74%] Generating engineviewwidget.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/atomindexcolor.dir/link.txt --verbose=1 -[ 74%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/engineviewwidget.moc_parameters -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/atomindexcolor.so CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 72%] Generating addenginedialog.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/addenginedialog.moc_parameters +[ 72%] Generating application.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/application.moc_parameters +[ 72%] Generating detachedview.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/detachedview.moc_parameters +[ 72%] Generating enginecolorswidget.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/enginecolorswidget.moc_parameters +[ 72%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qalgorithms.h:45, - from /usr/include/qt4/QtCore/qdebug.h:45, - from /usr/include/qt4/QtCore/QDebug:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp:29: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Generating glgraphicsview.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/glgraphicsview.moc_parameters -[ 74%] Generating importdialog.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/importdialog.moc_parameters -[ 74%] Generating mainwindow.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/mainwindow.moc_parameters -[ 74%] Generating pluginitemmodel.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/pluginitemmodel.moc_parameters -[ 74%] Generating pluginlistview.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/pluginlistview.moc_parameters -[ 75%] Generating pluginsettings.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/pluginsettings.moc_parameters -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 75%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp -[ 75%] Built target atomindexcolor +[ 72%] Generating engineitemdelegate.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/engineitemdelegate.moc_parameters +[ 73%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx +[ 73%] Generating engineitemmodel.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/engineitemmodel.moc_parameters In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qalgorithms.h:45, - from /usr/include/qt4/QtCore/qdebug.h:45, - from /usr/include/qt4/QtCore/QDebug:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp:27: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/residuecolor.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 75%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp -[ 75%] Generating primitiveitemmodel.moc -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/primitiveitemmodel.moc_parameters +[ 74%] Generating enginelistview.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/enginelistview.moc_parameters +[ 74%] Generating engineprimitiveswidget.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/engineprimitiveswidget.moc_parameters +[ 74%] Generating engineviewwidget.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/engineviewwidget.moc_parameters +[ 74%] Generating flattabwidget.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/flattabwidget.moc_parameters +[ 74%] Generating glgraphicsview.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/glgraphicsview.moc_parameters +[ 74%] Generating importdialog.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/importdialog.moc_parameters +[ 74%] Generating mainwindow.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/mainwindow.moc_parameters +[ 74%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8714,23 +8673,31 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/qprocess.h:45, + from /usr/include/qt4/QtCore/QProcess:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 74%] Generating pluginitemmodel.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/pluginitemmodel.moc_parameters +[ 74%] Generating pluginlistview.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/pluginlistview.moc_parameters +[ 75%] Generating pluginsettings.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/pluginsettings.moc_parameters +[ 75%] Generating primitiveitemmodel.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/primitiveitemmodel.moc_parameters [ 75%] Generating primitivetreeview.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/primitivetreeview.moc_parameters -[ 75%] Linking CXX shared module ../../../../lib/vibrationextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/vibrationextension.so CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 75%] Generating projecttreeeditor.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/projecttreeeditor.moc_parameters +[ 75%] Linking CXX shared module ../../../lib/distancecolor.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/distancecolor.dir/link.txt --verbose=1 [ 75%] Generating projecttreemodel.moc +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/distancecolor.so CMakeFiles/distancecolor.dir/distancecolor.cpp.o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/projecttreemodel.moc_parameters [ 75%] Generating projecttreemodeldelegate.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/projecttreemodeldelegate.moc_parameters @@ -8740,28 +8707,27 @@ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/settingsdialog.moc_parameters [ 75%] Generating atomdelegate.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/atomdelegate.moc_parameters -[ 75%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 75%] Built target vibrationextension +[ 75%] Built target distancecolor +[ 75%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/atom.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/atom.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/atom.cpp +[ 75%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o [ 76%] Generating bonddelegate.moc +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/bonddelegate.moc_parameters -[ 76%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/atom.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8770,10 +8736,9 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/QIODevice:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -8781,45 +8746,8 @@ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/labeldelegate.moc_parameters [ 76%] Generating moleculedelegate.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/moleculedelegate.moc_parameters -[ 76%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx -[ 76%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfaceextension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ [ 76%] Generating residuedelegate.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/residuedelegate.moc_parameters -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/distancecolor.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ [ 76%] Generating selectiondelegate.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/selectiondelegate.moc_parameters [ 76%] Generating ui_addenginedialog.h @@ -8828,44 +8756,71 @@ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_enginecolorswidget.h /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.ui [ 76%] Generating ui_engineprimitiveswidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.ui +[ 76%] Linking CXX shared module ../../../lib/residuecolor.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/residuecolor.dir/link.txt --verbose=1 [ 76%] Generating ui_importdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_importdialog.h /build/avogadro-1.2.0/avogadro/src/importdialog.ui +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 76%] Generating ui_mainwindow.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_mainwindow.h /build/avogadro-1.2.0/avogadro/src/mainwindow.ui [ 77%] Generating ui_pluginsettings.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_pluginsettings.h /build/avogadro-1.2.0/avogadro/src/pluginsettings.ui [ 77%] Generating ui_projecttreeeditor.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_projecttreeeditor.h /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.ui -[ 77%] Linking CXX shared module ../../../lib/residuecolor.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/residuecolor.dir/link.txt --verbose=1 [ 77%] Generating ui_settingsdialog.h -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_settingsdialog.h /build/avogadro-1.2.0/avogadro/src/settingsdialog.ui +[ 77%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 77%] Generating qrc_avogadro.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name avogadro -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/qrc_avogadro.cxx /build/avogadro-1.2.0/avogadro/src/avogadro.qrc [ 77%] Generating avogadro_af.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/af.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_af.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_af.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 77%] Linking CXX shared module ../../../../lib/swcntbuilderextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/cmake -E cmake_link_script CMakeFiles/swcntbuilderextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/swcntbuilderextension.so CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU tubegen/libtubegen.a cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_af.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_af.qm [ 77%] Generating avogadro_ar.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ar.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ar.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ar.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 77%] Built target residuecolor cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ar.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ar.qm +[ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/iostream:38, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 77%] Generating avogadro_bg.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/bg.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_bg.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_bg.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_bg.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_bg.qm -[ 77%] Generating avogadro_ca.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ca.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca.ts -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 77%] Built target residuecolor -[ 77%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp +[ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8874,60 +8829,60 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, - from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, - from /usr/include/qt4/QtGui/QStyledItemDelegate:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp:19: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 77%] Generating avogadro_ca.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ca.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca.qm +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 77%] Built target swcntbuilderextension [ 77%] Generating avogadro_ca@valencia.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ca@valencia.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca@valencia.ts +[ 77%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca@valencia.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca@valencia.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca@valencia.qm -[ 78%] Generating avogadro_cs.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/cs.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_cs.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_cs.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 78%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx:9: + from /usr/include/qt4/QtCore/qalgorithms.h:45, + from /usr/include/qt4/QtCore/qdebug.h:45, + from /usr/include/qt4/QtCore/QDebug:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca@valencia.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca@valencia.qm +[ 78%] Generating avogadro_cs.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/cs.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_cs.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_cs.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_cs.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_cs.qm -[ 78%] Linking CXX shared module ../../../lib/distancecolor.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/distancecolor.dir/link.txt --verbose=1 [ 78%] Generating avogadro_da.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/da.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_da.ts -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/distancecolor.so CMakeFiles/distancecolor.dir/distancecolor.cpp.o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_da.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_da.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_da.qm [ 78%] Generating avogadro_de.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/de.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_de.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_de.ts -[ 78%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/ir.cpp.o Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/ir.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp +[ 78%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8935,14 +8890,11 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp:21: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/QIODevice:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -8951,102 +8903,92 @@ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/el.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_el.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_el.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 78%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/QtGlobal:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:27: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_el.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_el.qm [ 78%] Generating avogadro_en_AU.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/en_AU.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_AU.ts -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_AU.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 78%] Built target distancecolor +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_AU.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_AU.qm [ 78%] Generating avogadro_en_CA.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/en_CA.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_CA.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_AU.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_AU.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_CA.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_CA.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_CA.qm [ 78%] Generating avogadro_en_GB.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/en_GB.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_GB.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_GB.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_CA.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_CA.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_GB.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_GB.qm [ 78%] Generating avogadro_es.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/es.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_es.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_GB.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_GB.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_es.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 78%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/bits/stl_algobase.h:59, + from /usr/include/c++/8/vector:60, + from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_es.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_es.qm [ 78%] Generating avogadro_et.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/et.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_et.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_et.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_es.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_es.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_et.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_et.qm [ 78%] Generating avogadro_eu.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/eu.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_eu.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_eu.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 78%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/ir.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/ir.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_eu.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_eu.qm +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp:21: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 79%] Generating avogadro_fi.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fi.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fi.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_eu.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_eu.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fi.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fi.qm [ 79%] Generating avogadro_fr.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr.ts -[ 79%] Generating avogadro_fr_CA.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fr_CA.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr_CA.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr.qm +[ 79%] Generating avogadro_fr_CA.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fr_CA.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr_CA.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr_CA.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr_CA.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr_CA.qm [ 79%] Generating avogadro_gl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/gl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_gl.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_gl.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 79%] Generating avogadro_he.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/he.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_gl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_gl.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.qm -[ 79%] Generating avogadro_hi.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 79%] Generating avogadro_hr.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.qm -[ 79%] Generating avogadro_hu.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hu.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.qm -[ 79%] Generating avogadro_id.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/id.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 80%] Generating avogadro_it.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/it.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 80%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx +[ 79%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp +[ 79%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9054,19 +8996,15 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, + from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, + from /usr/include/qt4/QtGui/QStyledItemDelegate:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 80%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.qm In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9074,21 +9012,25 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 80%] Generating avogadro_ja.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ja.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ja.ts -[ 81%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx -[ 81%] Generating avogadro_kn.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/kn.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_kn.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_gl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_gl.qm +[ 79%] Generating avogadro_he.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/he.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.qm +[ 79%] Generating avogadro_hi.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 79%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9100,137 +9042,265 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.qm +[ 79%] Generating avogadro_hr.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.qm +[ 79%] Generating avogadro_hu.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hu.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.qm +[ 79%] Generating avogadro_id.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/id.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.qm +[ 80%] Generating avogadro_it.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/it.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.qm +[ 80%] Generating avogadro_ja.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ja.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ja.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ja.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ja.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ja.qm +[ 80%] Generating avogadro_kn.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/kn.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_kn.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_kn.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_kn.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_kn.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ja.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ja.qm -[ 81%] Generating avogadro_ms.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ms.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ms.ts -[ 81%] Generating avogadro_ko.qm +[ 80%] Generating avogadro_ko.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ko.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ko.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ko.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ko.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ko.qm +[ 80%] Generating avogadro_ms.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ms.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ms.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ms.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 81%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ms.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ms.qm +[ 80%] Generating avogadro_nb.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/nb.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.qm +[ 80%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp +[ 80%] Generating avogadro_nl.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/nl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nl.ts In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp:25: + from /usr/include/qt4/QtCore/qalgorithms.h:45, + from /usr/include/qt4/QtCore/qdebug.h:45, + from /usr/include/qt4/QtCore/QDebug:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ko.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ko.qm -[ 81%] Generating avogadro_nb.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/nb.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ms.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ms.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 81%] Generating avogadro_nl.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/nl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nl.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nl.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.qm -[ 81%] Generating avogadro_oc.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/oc.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_oc.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nl.qm +[ 80%] Generating avogadro_oc.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/oc.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_oc.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_oc.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 81%] Generating avogadro_pl.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_oc.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_oc.qm +[ 80%] Generating avogadro_pl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pl.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pl.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_oc.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_oc.qm -[ 82%] Generating avogadro_pt.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pl.qm +[ 81%] Generating avogadro_pt.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pt.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pl.qm -[ 82%] Generating avogadro_pt_BR.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pt_BR.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt_BR.ts +[ 81%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt.qm +[ 81%] Generating avogadro_pt_BR.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pt_BR.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt_BR.ts +[ 81%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt_BR.ts -[ 82%] Generating avogadro_ru.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ru.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ru.ts +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/QIODevice:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 81%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/QtGlobal:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:27: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +/build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp: In member function 'void Avogadro::GamessControlGroup::WriteToFile(std::ostream&, Avogadro::GamessInputData*, long int)': +/build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:850:19: warning: '%s' directive writing up to 179 bytes into a region of size 174 [-Wformat-overflow=] + sprintf( Out, "CITYP=%s ", textVal ); + ^~~~~~~~~~~ ~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/c++/8/cstdio:42, + from /usr/include/c++/8/ext/string_conversions.h:43, + from /usr/include/c++/8/bits/basic_string.h:6400, + from /usr/include/c++/8/string:52, + from /usr/include/c++/8/bits/locale_classes.h:40, + from /usr/include/c++/8/bits/ios_base.h:41, + from /usr/include/c++/8/ios:42, + from /usr/include/c++/8/ostream:38, + from /usr/include/c++/8/iostream:39, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 8 and 187 bytes into a destination of size 180 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt_BR.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt_BR.qm +[ 81%] Generating avogadro_ru.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ru.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ru.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ru.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt_BR.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt_BR.qm -[ 82%] Generating avogadro_sk.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ru.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ru.qm +[ 81%] Generating avogadro_sk.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sk.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sk.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sk.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 82%] Generating avogadro_sl.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sk.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sk.qm +[ 81%] Generating avogadro_sl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sl.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sl.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sk.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sk.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sl.qm -[ 82%] Generating avogadro_sq.qm +[ 81%] Generating avogadro_sq.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sq.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sq.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sq.ts -[ 82%] Generating avogadro_sr.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sr.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sq.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sq.qm +[ 81%] Generating avogadro_sr.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sr.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sr.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sq.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sq.qm -[ 82%] Generating avogadro_sv.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sv.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sv.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sr.qm +[ 81%] Generating avogadro_sv.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sv.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sv.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sv.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 82%] Generating avogadro_ta.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sv.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sv.qm +[ 81%] Linking CXX shared module ../../../../lib/surfaceextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/surfaceextension.so CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel +[ 81%] Generating avogadro_ta.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ta.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ta.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ta.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sv.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sv.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ta.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ta.qm +[ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, + from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp:25: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 82%] Generating avogadro_te.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/te.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_te.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ta.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ta.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_te.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 82%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_te.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_te.qm [ 83%] Generating avogadro_th.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/th.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_th.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_th.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_te.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_te.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_th.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_th.qm [ 83%] Generating avogadro_tr.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/tr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_tr.ts -[ 83%] Generating avogadro_ug.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ug.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ug.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_tr.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_tr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_tr.qm +[ 83%] Generating avogadro_ug.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ug.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ug.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ug.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 83%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_tr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_tr.qm +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 83%] Built target surfaceextension +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ug.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ug.qm +[ 83%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9240,24 +9310,37 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:22, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx:9: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ug.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ug.qm [ 83%] Generating avogadro_uk.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/uk.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_uk.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_uk.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 83%] Generating avogadro_vi.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/vi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_vi.ts -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_vi.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 83%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx +[ 83%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/bond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/bond.cpp +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/bond.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_uk.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_uk.qm +[ 84%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx +[ 84%] Generating avogadro_vi.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/vi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_vi.ts In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9266,54 +9349,80 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 83%] Generating avogadro_zh_CN.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/zh_CN.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_CN.ts +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_vi.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_vi.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_vi.qm +[ 84%] Generating avogadro_zh_CN.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/zh_CN.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_CN.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_CN.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 83%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp +[ 84%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/camera.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/camera.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/camera.cpp +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/camera.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_CN.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_CN.qm +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/avogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= +[ 85%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/nmr.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/nmr.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp:18: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qhash.h:45, + from /usr/include/qt4/QtCore/QHash:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_CN.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_CN.qm -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/avogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= -[ 84%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp +Scanning dependencies of target avogadro-app +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 85%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/aboutdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qalgorithms.h:45, - from /usr/include/qt4/QtCore/qdebug.h:45, - from /usr/include/qt4/QtCore/QDebug:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp:48: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/avogadro/src/aboutdialog.h:23, + from /build/avogadro-1.2.0/avogadro/src/aboutdialog.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 84%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o +[ 85%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -9334,42 +9443,43 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 85%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/nmr.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/nmr.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp +[ 85%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qhash.h:45, - from /usr/include/qt4/QtCore/QHash:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp:20: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:22, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target avogadro-app -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 85%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/atom.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/atom.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/atom.cpp -[ 85%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/aboutdialog.cpp -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/atom.cpp:2: +[ 85%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/qprocess.h:45, + from /usr/include/qt4/QtCore/QProcess:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 85%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9379,15 +9489,18 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/avogadro/src/aboutdialog.h:23, - from /build/avogadro-1.2.0/avogadro/src/aboutdialog.cpp:19: + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 85%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx +[ 85%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp +[ 85%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9396,14 +9509,15 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 85%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9411,34 +9525,33 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/QIODevice:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 85%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx +[ 85%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/addenginedialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, - from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, - from /usr/include/qt4/QtGui/QStyledItemDelegate:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/htmldelegate.h:22, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx:9: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_addenginedialog.h:12, + from /build/avogadro-1.2.0/avogadro/src/addenginedialog.h:28, + from /build/avogadro-1.2.0/avogadro/src/addenginedialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 85%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp +[ 85%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9447,46 +9560,19 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/qprocess.h:45, - from /usr/include/qt4/QtCore/QProcess:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp:26: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 85%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/bond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/bond.cpp -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/bond.cpp:2: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 85%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/camera.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/camera.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/camera.cpp -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/camera.cpp:2: + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 85%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/addenginedialog.cpp +[ 85%] Linking CXX shared module ../../../lib/forcefieldextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 85%] Built target forcefieldextension +[ 85%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaspectra.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9495,14 +9581,14 @@ from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_addenginedialog.h:12, - from /build/avogadro-1.2.0/avogadro/src/addenginedialog.h:28, - from /build/avogadro-1.2.0/avogadro/src/addenginedialog.cpp:25: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 85%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx +[ 85%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9518,11 +9604,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 85%] Linking CXX shared module ../../../../lib/orbitalextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/orbitalextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orbitalextension.so CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel -[ 85%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp +[ 85%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9530,17 +9613,17 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp:18: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, + from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, + from /usr/include/qt4/QtGui/QStyledItemDelegate:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/htmldelegate.h:22, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 85%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp +[ 85%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9553,28 +9636,22 @@ from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp:18: + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 85%] Built target orbitalextension -[ 85%] Linking CXX shared module ../../../../lib/surfaceextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceextension.dir/link.txt --verbose=1 -[ 85%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/surfaceextension.so CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel +[ 85%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/dos.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/dos.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/iostream:38, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: + from /usr/include/c++/8/string:38, + from /usr/include/openbabel-2.0/openbabel/generic.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 85%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp +[ 86%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9583,14 +9660,23 @@ from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp:39: + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp:48: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 85%] Built target surfaceextension -[ 85%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx +[ 86%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/string:38, + from /usr/include/openbabel-2.0/openbabel/generic.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp:20: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 87%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/application.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/application.cpp.o -c /build/avogadro-1.2.0/avogadro/src/application.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9599,28 +9685,16 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/../../../../../libavogadro/src/extensions/qtaim/qtaimextension.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 85%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/dos.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/dos.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/string:38, - from /usr/include/openbabel-2.0/openbabel/generic.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp:20: + from /usr/include/qt4/QtCore/qcoreapplication.h:45, + from /usr/include/qt4/QtGui/qapplication.h:45, + from /usr/include/qt4/QtGui/QApplication:1, + from /build/avogadro-1.2.0/avogadro/src/application.h:25, + from /build/avogadro-1.2.0/avogadro/src/application.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 86%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp +[ 87%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9634,14 +9708,16 @@ from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp:26: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 86%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp +[ 87%] Linking CXX shared module ../../../../lib/orbitalextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/orbitalextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orbitalextension.so CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel +[ 87%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9651,48 +9727,49 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp:18: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessextension.h:26, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 87%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/application.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/application.cpp.o -c /build/avogadro-1.2.0/avogadro/src/application.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 87%] Built target orbitalextension +[ 87%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/cd.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/cd.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qcoreapplication.h:45, - from /usr/include/qt4/QtGui/qapplication.h:45, - from /usr/include/qt4/QtGui/QApplication:1, - from /build/avogadro-1.2.0/avogadro/src/application.h:25, - from /build/avogadro-1.2.0/avogadro/src/application.cpp:22: + from /usr/include/c++/8/string:38, + from /usr/include/openbabel-2.0/openbabel/generic.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp +[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, - from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp:25: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 88%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp +[ 88%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9705,13 +9782,15 @@ from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp:18: + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 88%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp +[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx +[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9721,17 +9800,13 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:22: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9751,27 +9826,23 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -/build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp: In member function 'void Avogadro::GamessControlGroup::WriteToFile(std::ostream&, Avogadro::GamessInputData*, long int)': -/build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:850:19: warning: '%s' directive writing up to 179 bytes into a region of size 174 [-Wformat-overflow=] - sprintf( Out, "CITYP=%s ", textVal ); - ^~~~~~~~~~~ ~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/c++/8/cstdio:42, - from /usr/include/c++/8/ext/string_conversions.h:43, - from /usr/include/c++/8/bits/basic_string.h:6400, - from /usr/include/c++/8/string:52, - from /usr/include/c++/8/bits/locale_classes.h:40, - from /usr/include/c++/8/bits/ios_base.h:41, - from /usr/include/c++/8/ios:42, - from /usr/include/c++/8/ostream:38, - from /usr/include/c++/8/iostream:39, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 8 and 187 bytes into a destination of size 180 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 88%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/detachedview.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/detachedview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/detachedview.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/avogadro/src/detachedview.h:28, + from /build/avogadro-1.2.0/avogadro/src/detachedview.cpp:25: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 88%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/color.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/color.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, @@ -9787,45 +9858,64 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 88%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaspectra.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp +[ 88%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/cube.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/cube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/cube.cpp +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/cube.cpp:3: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 88%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcadata.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcadata.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp:24: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp +[ 88%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/raman.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/raman.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/string:38, + from /usr/include/openbabel-2.0/openbabel/generic.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp:20: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 88%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp:25: + from /usr/include/qt4/QtCore/qalgorithms.h:45, + from /usr/include/qt4/QtCore/qdebug.h:45, + from /usr/include/qt4/QtCore/QDebug:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp:39: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 88%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcadata.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcadata.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp -[ 88%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp +[ 88%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9837,20 +9927,30 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp:25: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectraextension.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/string:38, - from /usr/include/openbabel-2.0/openbabel/generic.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp:20: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, + from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp +[ 88%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx +[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9858,20 +9958,15 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp:26: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9884,26 +9979,8 @@ from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 88%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/detachedview.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/detachedview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/detachedview.cpp -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/avogadro/src/detachedview.h:28, - from /build/avogadro-1.2.0/avogadro/src/detachedview.cpp:25: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -9924,8 +10001,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 88%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp +[ 88%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9937,15 +10014,35 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp:18: + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 89%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp +[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp:26: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 88%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9957,15 +10054,14 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:19: + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 89%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx +[ 88%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9977,17 +10073,13 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessextension.h:26, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectratype.h:24, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 89%] Linking CXX shared module ../../../../lib/qtaimextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/qtaimextension.so CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 89%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx +[ 88%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9995,16 +10087,16 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaextension.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 89%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o +[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -10023,35 +10115,30 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 89%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/cube.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/cube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/cube.cpp -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/cube.cpp:3: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 89%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/cd.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/cd.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp +[ 88%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/string:38, - from /usr/include/openbabel-2.0/openbabel/generic.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp:20: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 89%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o +[ 88%] Linking CXX shared module ../../../../lib/gamessextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/gamessextension.so CMakeFiles/gamessextension.dir/inputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessextension.cpp.o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 88%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.cpp -[ 89%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/eigen.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/eigen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10066,19 +10153,29 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:4: +[ 88%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/../../../../../libavogadro/src/extensions/qtaim/qtaimextension.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 89%] Built target qtaimextension -[ 89%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 88%] Built target gamessextension +[ 88%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineitemdelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -10096,8 +10193,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 89%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx +[ 88%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_ir.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_ir.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10105,23 +10202,18 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaextension.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/ir.h:23, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1822, - from /usr/include/python2.7/numpy/ndarrayobject.h:12, - from /usr/include/python2.7/numpy/arrayobject.h:4, - from /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:5: -/usr/include/python2.7/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] - #warning "Using deprecated NumPy API, disable it with " \ - ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o +[ 89%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -10139,8 +10231,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx +[ 89%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10150,15 +10242,17 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaanalysedialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx:9: + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp +[ 89%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10166,49 +10260,71 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp:25: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/elementtranslator.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/elementtranslator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/elementtranslator.cpp +[ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_nmr.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qhash.h:45, + from /usr/include/qt4/QtCore/QHash:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/nmr.h:23, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/eigen.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/eigen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/elementtranslator.cpp:2: + from /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:4: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx +In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1822, + from /usr/include/python2.7/numpy/ndarrayobject.h:12, + from /usr/include/python2.7/numpy/arrayobject.h:4, + from /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:5: +/usr/include/python2.7/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] + #warning "Using deprecated NumPy API, disable it with " \ + ^~~~~~~ +[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o +[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginelistview.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/enginelistview.cpp +[ 90%] Linking CXX shared module ../../../../lib/qtaimextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimextension.dir/link.txt --verbose=1 In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, - from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx:9: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, + from /usr/include/qt4/QtCore/QModelIndex:1, + from /build/avogadro-1.2.0/avogadro/src/engineitemmodel.h:29, + from /build/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10216,18 +10332,21 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qframe.h:45, + from /usr/include/qt4/QtGui/qabstractscrollarea.h:45, + from /usr/include/qt4/QtGui/qabstractitemview.h:45, + from /usr/include/qt4/QtGui/qlistview.h:45, + from /usr/include/qt4/QtGui/QListView:1, + from /build/avogadro-1.2.0/avogadro/src/enginelistview.h:25, + from /build/avogadro-1.2.0/avogadro/src/enginelistview.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/qtaimextension.so CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10235,15 +10354,30 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, - from /usr/include/qt4/QtCore/QModelIndex:1, - from /build/avogadro-1.2.0/avogadro/src/engineitemmodel.h:29, - from /build/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp:26: + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h:12, + from /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.h:27, + from /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx +[ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_dos.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_dos.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qhash.h:45, + from /usr/include/qt4/QtCore/QHash:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/dos.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10251,20 +10385,20 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystallographyextension.h:23, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginelistview.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/enginelistview.cpp +[ 90%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10274,23 +10408,27 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qframe.h:45, - from /usr/include/qt4/QtGui/qabstractscrollarea.h:45, - from /usr/include/qt4/QtGui/qabstractitemview.h:45, - from /usr/include/qt4/QtGui/qlistview.h:45, - from /usr/include/qt4/QtGui/QListView:1, - from /build/avogadro-1.2.0/avogadro/src/enginelistview.h:25, - from /build/avogadro-1.2.0/avogadro/src/enginelistview.cpp:22: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaanalysedialog.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/raman.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/raman.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 90%] Built target qtaimextension +[ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_uv.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_uv.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/string:38, - from /usr/include/openbabel-2.0/openbabel/generic.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp:20: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qhash.h:45, + from /usr/include/qt4/QtCore/QHash:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/uv.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -10315,27 +10453,39 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx +[ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_cd.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_cd.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectraextension.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx:9: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qhash.h:45, + from /usr/include/qt4/QtCore/QHash:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/cd.h:25, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/engine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/engine.cpp +[ 90%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaspectra.h:26, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/elementtranslator.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/elementtranslator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/elementtranslator.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, @@ -10345,47 +10495,45 @@ from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/engine.cpp:2: + from /build/avogadro-1.2.0/libavogadro/src/python/elementtranslator.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx +[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaspectra.h:26, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/avogadro/src/engineviewwidget.h:28, + from /build/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Linking CXX shared module ../../../../lib/gamessextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/gamessextension.so CMakeFiles/gamessextension.dir/inputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessextension.cpp.o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp +[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/flattabwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h:12, - from /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.h:27, - from /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp:25: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/avogadro/src/flattabwidget.h:26, + from /build/avogadro-1.2.0/avogadro/src/flattabwidget.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp +[ 91%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_raman.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10395,16 +10543,47 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/avogadro/src/engineviewwidget.h:28, - from /build/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp:25: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/raman.h:24, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 90%] Built target gamessextension -[ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx +[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qmetatype.h:45, + from /usr/include/qt4/QtGui/qgraphicsview.h:45, + from /usr/include/qt4/QtGui/QGraphicsView:1, + from /build/avogadro-1.2.0/avogadro/src/glgraphicsview.h:28, + from /build/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp:25: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/engine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/engine.cpp +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/engine.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 92%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10414,15 +10593,17 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx:9: + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx +[ 92%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10432,15 +10613,34 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectratype.h:24, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx:9: + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystallographyextension.h:23, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx +[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/importdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/importdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/importdialog.cpp +In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_importdialog.h:12, + from /build/avogadro-1.2.0/avogadro/src/importdialog.h:28, + from /build/avogadro-1.2.0/avogadro/src/importdialog.cpp:25: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/main.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/main.cpp.o -c /build/avogadro-1.2.0/avogadro/src/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10452,15 +10652,27 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx:9: + from /build/avogadro-1.2.0/avogadro/src/main.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp +[ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/extension.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/extension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/extension.cpp +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/extension.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/mainwindow.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o -c /build/avogadro-1.2.0/avogadro/src/mainwindow.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10472,16 +10684,15 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp:25: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, + from /build/avogadro-1.2.0/avogadro/src/mainwindow.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx +[ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10489,18 +10700,20 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/flattabwidget.cpp +[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10509,29 +10722,42 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/avogadro/src/flattabwidget.h:26, - from /build/avogadro-1.2.0/avogadro/src/flattabwidget.cpp:23: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, + from /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.h:29, + from /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp +[ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qmetatype.h:45, - from /usr/include/qt4/QtGui/qgraphicsview.h:45, - from /usr/include/qt4/QtGui/QGraphicsView:1, - from /build/avogadro-1.2.0/avogadro/src/glgraphicsview.h:28, - from /build/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp:25: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputfileextension.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 91%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_ir.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_ir.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx +[ 93%] Linking CXX shared module ../../../../lib/spectraextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o CMakeFiles/spectraextension.dir/ir.cpp.o CMakeFiles/spectraextension.dir/nmr.cpp.o CMakeFiles/spectraextension.dir/dos.cpp.o CMakeFiles/spectraextension.dir/uv.cpp.o CMakeFiles/spectraextension.dir/cd.cpp.o CMakeFiles/spectraextension.dir/raman.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o CMakeFiles/spectraextension.dir/moc_ir.cxx.o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o CMakeFiles/spectraextension.dir/moc_dos.cxx.o CMakeFiles/spectraextension.dir/moc_uv.cxx.o CMakeFiles/spectraextension.dir/moc_cd.cxx.o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 93%] Linking CXX shared module ../../../../lib/orcaextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orcaextension.so CMakeFiles/orcaextension.dir/orcaextension.cpp.o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o CMakeFiles/orcaextension.dir/orcadata.cpp.o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginlistview.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10539,19 +10765,20 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/ir.h:23, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, + from /build/avogadro-1.2.0/avogadro/src/pluginlistview.h:27, + from /build/avogadro-1.2.0/avogadro/src/pluginlistview.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 93%] Built target spectraextension +[ 93%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10563,29 +10790,17 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputfileextension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/extension.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/extension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/extension.cpp -[ 92%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 93%] Built target orcaextension +[ 93%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/extension.cpp:2: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10603,25 +10818,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/fragment.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/fragment.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/fragment.cpp -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/fragment.cpp:2: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 92%] Linking CXX shared module ../../../../lib/orcaextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orcaextension.so CMakeFiles/orcaextension.dir/orcaextension.cpp.o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o CMakeFiles/orcaextension.dir/orcadata.cpp.o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 92%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o +[ 93%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -10639,46 +10836,61 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_nmr.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx +[ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/fragment.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/fragment.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/fragment.cpp +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/fragment.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginsettings.cpp +[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qhash.h:45, - from /usr/include/qt4/QtCore/QHash:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/nmr.h:23, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, + from /build/avogadro-1.2.0/avogadro/src/pluginlistview.h:27, + from /build/avogadro-1.2.0/avogadro/src/pluginsettings.h:25, + from /build/avogadro-1.2.0/avogadro/src/pluginsettings.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx:9: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, + from /usr/include/qt4/QtCore/QAbstractItemModel:1, + from /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.h:28, + from /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Built target orcaextension [ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx -[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/importdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/importdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/importdialog.cpp +[ 93%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10702,32 +10914,43 @@ from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_importdialog.h:12, - from /build/avogadro-1.2.0/avogadro/src/importdialog.h:28, - from /build/avogadro-1.2.0/avogadro/src/importdialog.cpp:25: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_dos.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_dos.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx +[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qhash.h:45, - from /usr/include/qt4/QtCore/QHash:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/dos.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qframe.h:45, + from /usr/include/qt4/QtGui/qabstractscrollarea.h:45, + from /usr/include/qt4/QtGui/qabstractitemview.h:45, + from /usr/include/qt4/QtGui/qtreeview.h:45, + from /usr/include/qt4/QtGui/QTreeView:1, + from /build/avogadro-1.2.0/avogadro/src/primitivetreeview.h:25, + from /build/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx +[ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/glwidget.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/glwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10745,6 +10968,19 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 93%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -10764,10 +11000,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/main.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/main.cpp.o -c /build/avogadro-1.2.0/avogadro/src/main.cpp -[ 93%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_uv.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_uv.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx +[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10779,24 +11013,12 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/main.cpp:27: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qhash.h:45, - from /usr/include/qt4/QtCore/QHash:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/uv.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx:9: + from /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.h:47, + from /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o +[ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, @@ -10814,8 +11036,10 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o +[ 94%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx +[ 94%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10834,85 +11058,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 94%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_cd.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_cd.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qhash.h:45, - from /usr/include/qt4/QtCore/QHash:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/cd.h:25, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 94%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_raman.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/raman.h:24, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 94%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10931,24 +11076,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/qprocess.h:45, - from /usr/include/qt4/QtCore/QProcess:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ [ 95%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, @@ -10969,23 +11096,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/glwidget.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/glwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/mainwindow.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o -c /build/avogadro-1.2.0/avogadro/src/mainwindow.cpp -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:2: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ +[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10997,15 +11109,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/avogadro/src/mainwindow.cpp:24: + from /build/avogadro-1.2.0/avogadro/src/projecttreeitem.h:28, + from /build/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.cpp +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11017,14 +11127,28 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, - from /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.h:29, - from /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.cpp:25: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx +[ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/main.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/main.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/main.cpp +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/python2.7/Python.h:19, + from /build/avogadro-1.2.0/libavogadro/src/python/main.cpp:1: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11036,28 +11160,28 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx:9: + from /build/avogadro-1.2.0/avogadro/src/projecttreemodel.h:28, + from /build/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/main.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/main.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/main.cpp +[ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/mesh.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/mesh.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/mesh.cpp +[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/python2.7/Python.h:19, - from /build/avogadro-1.2.0/libavogadro/src/python/main.cpp:1: + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/mesh.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11069,16 +11193,15 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx:9: + from /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.h:25, + from /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx +[ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/meshgenerator.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/meshgenerator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/meshgenerator.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11093,32 +11216,58 @@ from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginlistview.cpp +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/meshgenerator.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/molecule.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/molecule.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/savedialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/savedialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/savedialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, - from /build/avogadro-1.2.0/avogadro/src/pluginlistview.h:27, - from /build/avogadro-1.2.0/avogadro/src/pluginlistview.cpp:23: + from /usr/include/qt4/QtCore/qchar.h:45, + from /usr/include/qt4/QtCore/qstring.h:45, + from /usr/include/qt4/QtCore/qdir.h:45, + from /usr/include/qt4/QtGui/qfiledialog.h:45, + from /usr/include/qt4/QtGui/QFileDialog:1, + from /build/avogadro-1.2.0/avogadro/src/savedialog.h:25, + from /build/avogadro-1.2.0/avogadro/src/savedialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/mesh.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/mesh.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/mesh.cpp +[ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculefile.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/moleculefile.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/moleculefile.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, @@ -11128,12 +11277,15 @@ from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/mesh.cpp:2: + from /build/avogadro-1.2.0/libavogadro/src/python/moleculefile.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginsettings.cpp +[ 96%] Linking CXX shared module ../../../../lib/crystallographyextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lsymspg +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11142,18 +11294,16 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, - from /build/avogadro-1.2.0/avogadro/src/pluginlistview.h:27, - from /build/avogadro-1.2.0/avogadro/src/pluginsettings.h:25, - from /build/avogadro-1.2.0/avogadro/src/pluginsettings.cpp:22: + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/qprocess.h:45, + from /usr/include/qt4/QtCore/QProcess:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp +[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/settingsdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11161,18 +11311,15 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, - from /usr/include/qt4/QtCore/QAbstractItemModel:1, - from /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.h:28, - from /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp:26: + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_settingsdialog.h:12, + from /build/avogadro-1.2.0/avogadro/src/settingsdialog.h:28, + from /build/avogadro-1.2.0/avogadro/src/settingsdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Linking CXX shared module ../../../../lib/crystallographyextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lsymspg -[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx +[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11184,35 +11331,25 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx:9: + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.h:25, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qframe.h:45, - from /usr/include/qt4/QtGui/qabstractscrollarea.h:45, - from /usr/include/qt4/QtGui/qabstractitemview.h:45, - from /usr/include/qt4/QtGui/qtreeview.h:45, - from /usr/include/qt4/QtGui/QTreeView:1, - from /build/avogadro-1.2.0/avogadro/src/primitivetreeview.h:25, - from /build/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp:25: +[ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculelist.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/moleculelist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/python2.7/Python.h:19, + from /build/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx +[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11224,16 +11361,15 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx:9: + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.h:25, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o +[ 96%] Built target crystallographyextension +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11248,32 +11384,13 @@ from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/meshgenerator.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/meshgenerator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/meshgenerator.cpp -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/meshgenerator.cpp:2: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -[ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/molecule.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/molecule.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp -[ 96%] Built target crystallographyextension +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11288,27 +11405,32 @@ from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx:9: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, +/build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp: In function 'void export_GLWidget()': +/build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:53:55: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + class_ >("GLWidget") + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/boost/function/function_base.hpp:16, + from /usr/include/boost/function/detail/prologue.hpp:17, + from /usr/include/boost/function/function_template.hpp:13, + from /usr/include/boost/function/detail/maybe_include.hpp:15, + from /usr/include/boost/function/function0.hpp:11, + from /usr/include/boost/python/errors.hpp:13, + from /usr/include/boost/python/handle.hpp:11, + from /usr/include/boost/python/args_fwd.hpp:10, + from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:2: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp -[ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o + from /build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:2: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11320,12 +11442,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.h:47, - from /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp:26: + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.h:25, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11337,60 +11460,16 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projecttreeitem.h:28, - from /build/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 97%] Linking CXX shared module ../../../../lib/spectraextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o CMakeFiles/spectraextension.dir/ir.cpp.o CMakeFiles/spectraextension.dir/nmr.cpp.o CMakeFiles/spectraextension.dir/dos.cpp.o CMakeFiles/spectraextension.dir/uv.cpp.o CMakeFiles/spectraextension.dir/cd.cpp.o CMakeFiles/spectraextension.dir/raman.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o CMakeFiles/spectraextension.dir/moc_ir.cxx.o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o CMakeFiles/spectraextension.dir/moc_dos.cxx.o CMakeFiles/spectraextension.dir/moc_uv.cxx.o CMakeFiles/spectraextension.dir/moc_cd.cxx.o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculefile.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/moleculefile.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/moleculefile.cpp -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/moleculefile.cpp:3: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 97%] Built target spectraextension -[ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculelist.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/moleculelist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/python2.7/Python.h:19, - from /build/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp:1: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/navigate.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/navigate.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/navigate.cpp -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/navigate.cpp:2: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11402,13 +11481,14 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projecttreemodel.h:28, - from /build/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp:25: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11420,66 +11500,16 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.h:25, - from /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp:22: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/savedialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/savedialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/savedialog.cpp -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qchar.h:45, - from /usr/include/qt4/QtCore/qstring.h:45, - from /usr/include/qt4/QtCore/qdir.h:45, - from /usr/include/qt4/QtGui/qfiledialog.h:45, - from /usr/include/qt4/QtGui/QFileDialog:1, - from /build/avogadro-1.2.0/avogadro/src/savedialog.h:25, - from /build/avogadro-1.2.0/avogadro/src/savedialog.cpp:22: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/settingsdialog.cpp -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_settingsdialog.h:12, - from /build/avogadro-1.2.0/avogadro/src/settingsdialog.h:28, - from /build/avogadro-1.2.0/avogadro/src/settingsdialog.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 98%] Linking CXX shared module ../../../../lib/inputfileextension.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/inputfileextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/inputfileextension.so CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/neighborlist.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/neighborlist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/neighborlist.cpp -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/neighborlist.cpp:2: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 98%] Built target inputfileextension -[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painter.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/painter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/painter.cpp +[ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/navigate.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/navigate.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/navigate.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, @@ -11489,12 +11519,12 @@ from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/painter.cpp:2: + from /build/avogadro-1.2.0/libavogadro/src/python/navigate.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp +[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11506,13 +11536,34 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.h:25, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp:22: + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.h:25, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.cpp +/build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp: In function 'void export_Molecule()': +/build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:88:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + std::auto_ptr >("Molecule", no_init) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/boost/function/function_base.hpp:16, + from /usr/include/boost/function/detail/prologue.hpp:17, + from /usr/include/boost/function/function_template.hpp:13, + from /usr/include/boost/function/detail/maybe_include.hpp:15, + from /usr/include/boost/function/function0.hpp:11, + from /usr/include/boost/python/errors.hpp:13, + from /usr/include/boost/python/handle.hpp:11, + from /usr/include/boost/python/args_fwd.hpp:10, + from /usr/include/boost/python/args.hpp:10, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:2: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp +[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11524,13 +11575,11 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.h:25, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.cpp:22: + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.h:25, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11542,31 +11591,24 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.h:25, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.cpp:22: + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.h:25, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp +[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/qrc_avogadro.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.h:25, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp:22: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/qrc_avogadro.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp +[ 98%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11578,13 +11620,31 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.h:25, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp:22: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp +[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/neighborlist.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/neighborlist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/neighborlist.cpp +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/neighborlist.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 99%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11596,19 +11656,26 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.h:25, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp:22: + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, + from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/qrc_avogadro.cxx -In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/qrc_avogadro.cxx:9: +[ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painter.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/painter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/painter.cpp +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/painter.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -11627,25 +11694,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -/build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp: In function 'void export_GLWidget()': -/build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:53:55: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - class_ >("GLWidget") - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/boost/function/function_base.hpp:16, - from /usr/include/boost/function/detail/prologue.hpp:17, - from /usr/include/boost/function/function_template.hpp:13, - from /usr/include/boost/function/detail/maybe_include.hpp:15, - from /usr/include/boost/function/function0.hpp:11, - from /usr/include/boost/python/errors.hpp:13, - from /usr/include/boost/python/handle.hpp:11, - from /usr/include/boost/python/args_fwd.hpp:10, - from /usr/include/boost/python/args.hpp:10, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:2: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/periodictableview.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/periodictableview.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/periodictableview.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, @@ -11678,25 +11726,6 @@ ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/pluginmanager.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/pluginmanager.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/pluginmanager.cpp -/build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp: In function 'void export_Molecule()': -/build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:88:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - std::auto_ptr >("Molecule", no_init) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/boost/function/function_base.hpp:16, - from /usr/include/boost/function/detail/prologue.hpp:17, - from /usr/include/boost/function/function_template.hpp:13, - from /usr/include/boost/function/detail/maybe_include.hpp:15, - from /usr/include/boost/function/function0.hpp:11, - from /usr/include/boost/python/errors.hpp:13, - from /usr/include/boost/python/handle.hpp:11, - from /usr/include/boost/python/args_fwd.hpp:10, - from /usr/include/boost/python/args.hpp:10, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:2: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, @@ -11740,6 +11769,11 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 99%] Linking CXX shared module ../../../../lib/inputfileextension.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/inputfileextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/inputfileextension.so CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o 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CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 99%] Built target inputfileextension [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qlist.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/qlist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/qlist.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, @@ -11828,9 +11862,7 @@ # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/tool.cpp.o -[100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/toolgroup.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong 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-fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/toolgroup.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/toolgroup.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, @@ -11844,6 +11876,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/toolgroup.cpp.o +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB 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/usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, @@ -11854,16 +11888,16 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[100%] Linking CXX shared module ../../../lib/Avogadro.so -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/python-module.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now 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CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o CMakeFiles/avogadro-app.dir/importdialog.cpp.o CMakeFiles/avogadro-app.dir/main.cpp.o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o CMakeFiles/avogadro-app.dir/savedialog.cpp.o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -o ../../bin/avogadro -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lopenbabel ../../lib/libavogadro.so.1.2.0 -lX11 -lboost_python -lX11 -lboost_python make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [100%] Built target avogadro-app +[100%] Linking CXX shared module ../../../lib/Avogadro.so +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/python-module.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/Avogadro.so CMakeFiles/python-module.dir/animation.cpp.o CMakeFiles/python-module.dir/atom.cpp.o CMakeFiles/python-module.dir/bond.cpp.o CMakeFiles/python-module.dir/camera.cpp.o CMakeFiles/python-module.dir/color.cpp.o CMakeFiles/python-module.dir/cube.cpp.o CMakeFiles/python-module.dir/eigen.cpp.o CMakeFiles/python-module.dir/elementtranslator.cpp.o CMakeFiles/python-module.dir/engine.cpp.o CMakeFiles/python-module.dir/extension.cpp.o CMakeFiles/python-module.dir/fragment.cpp.o CMakeFiles/python-module.dir/glwidget.cpp.o CMakeFiles/python-module.dir/main.cpp.o CMakeFiles/python-module.dir/mesh.cpp.o CMakeFiles/python-module.dir/meshgenerator.cpp.o CMakeFiles/python-module.dir/molecule.cpp.o CMakeFiles/python-module.dir/moleculefile.cpp.o CMakeFiles/python-module.dir/moleculelist.cpp.o CMakeFiles/python-module.dir/navigate.cpp.o CMakeFiles/python-module.dir/neighborlist.cpp.o CMakeFiles/python-module.dir/painter.cpp.o CMakeFiles/python-module.dir/painterdevice.cpp.o CMakeFiles/python-module.dir/periodictableview.cpp.o CMakeFiles/python-module.dir/plugin.cpp.o CMakeFiles/python-module.dir/pluginmanager.cpp.o CMakeFiles/python-module.dir/primitive.cpp.o CMakeFiles/python-module.dir/primitivelist.cpp.o CMakeFiles/python-module.dir/qlist.cpp.o CMakeFiles/python-module.dir/qstring.cpp.o CMakeFiles/python-module.dir/residue.cpp.o CMakeFiles/python-module.dir/sip.cpp.o CMakeFiles/python-module.dir/std_vector.cpp.o CMakeFiles/python-module.dir/swig.cpp.o CMakeFiles/python-module.dir/tool.cpp.o CMakeFiles/python-module.dir/toolgroup.cpp.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: -lstdc++ ../../../lib/libavogadro.so.1.2.0 -lQtOpenGL -lQtGui -lQtCore -lpython2.7 -lboost_python +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[100%] Built target python-module make[2]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/avogadro-1.2.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' @@ -11875,7 +11909,7 @@ dh_prep dh_installdirs dh_auto_install - cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/avogadro-1.2.0/debian/tmp AM_UPDATE_INFO_DIR=no + cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/avogadro-1.2.0/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/avogadro-1.2.0 -B/build/avogadro-1.2.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/avogadro-1.2.0/obj-x86_64-linux-gnu/CMakeFiles /build/avogadro-1.2.0/obj-x86_64-linux-gnu/CMakeFiles/progress.marks @@ -11890,14 +11924,14 @@ make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build @@ -11909,28 +11943,28 @@ make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 1%] Built target tubegen make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build +[ 1%] Built target tubegen [ 2%] Built target msym make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/elementcolor.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/elementcolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build [ 2%] Built target elementcolor make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/navigatetool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 3%] Built target navigatetool -[ 4%] Built target bsdyengine +[ 3%] Built target bsdyengine +[ 4%] Built target navigatetool make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build'. @@ -11968,521 +12002,512 @@ make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend -make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build +make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build +make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build +make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build +make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build +make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build +make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/forceengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/polygonengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/polygonengine.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 25%] Built target forceengine +make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend +[ 25%] Built target polygonengine make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= [ 26%] Built target simplewireengine make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend -[ 26%] Built target polygonengine make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= -make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 27%] Built target surfaceengine -[ 28%] Built target dipoleengine -make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend -make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend +[ 27%] Built target dipoleengine +make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/sphereengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 28%] Built target surfaceengine +make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/hbondengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= +[ 29%] Built target sphereengine +make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= -[ 29%] Built target hbondengine +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= +[ 30%] Built target hbondengine make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend -[ 30%] Built target sphereengine -make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/axesengine.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= +[ 30%] Built target axesengine make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ringengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 30%] Built target ribbonengine +make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/axesengine.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 31%] Built target ringengine -make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend -[ 31%] Built target axesengine -[ 31%] Built target ribbonengine -make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= -make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/stickengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 31%] Built target ringengine +make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend +[ 32%] Built target qtaimengine +make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/wireengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 32%] Built target stickengine +make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= -[ 31%] Built target stickengine -make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend -[ 32%] Built target qtaimengine +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= [ 33%] Built target wireengine make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend -make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/labelengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 34%] Built target selectrotatetool +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= +[ 33%] Built target cartoonengine +make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend +[ 33%] Built target labelengine make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend -[ 34%] Built target labelengine -make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend -[ 34%] Built target cartoonengine -make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build +make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build +make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build +make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build +[ 33%] Built target autorotatetool +make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 34%] Built target autorotatetool -make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build'. +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= +[ 33%] Built target clickmeasuretool +make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= -[ 34%] Built target clickmeasuretool +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 34%] Built target gl2psextension +make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend +[ 35%] Built target selectrotatetool make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 35%] Built target bondcentrictool +[ 36%] Built target bondcentrictool make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend -[ 36%] Built target gl2psextension -make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= [ 36%] Built target h2methylextension -make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= +make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 36%] Built target shaderextension -make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autoopttool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/aligntool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 36%] Built target shaderextension +make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/aligntool.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= -[ 37%] Built target invertchiralextension -[ 38%] Built target autoopttool -[ 39%] Built target supercellextension +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= +[ 37%] Built target autoopttool +make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend +[ 37%] Built target aligntool make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend -make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend -make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/drawtool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 39%] Built target aligntool -make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend +[ 38%] Built target supercellextension +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= +make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/drawtool.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= +[ 39%] Built target drawtool +make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend [ 40%] Built target manipulatetool +make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= +[ 41%] Built target fileimportextension make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= -[ 41%] Built target drawtool +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= -make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend -[ 42%] Built target molecularpropextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= -make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build +[ 42%] Built target molecularpropextension +make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= -[ 43%] Built target fileimportextension -make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/propextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build -[ 44%] Built target cartesianextension -make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/propextension.dir/build'. +make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build +[ 43%] Built target propextension +make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= -[ 45%] Built target propextension -make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend +make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build +[ 44%] Built target invertchiralextension +make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build -[ 46%] Built target pythonterminal -make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend +make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 45%] Built target pythonterminal +make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend +[ 46%] Built target cartesianextension +make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/selectextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= [ 46%] Built target hydrogensextension -make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend +make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend [ 46%] Built target selectextension -make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend +make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 46%] Built target insertpeptideextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 47%] Built target networkfetchextension +make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend +[ 47%] Built target insertpeptideextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend -make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 48%] Built target forcefieldextension -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend -[ 49%] Built target networkfetchextension -make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend +make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= +[ 49%] Built target forcefieldextension +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 49%] Built target insertdnaextension +make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= -[ 49%] Built target insertdnaextension +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 50%] Built target symmetryextension make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= -[ 50%] Built target symmetryextension +[ 51%] Built target povrayextension make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= +[ 53%] Built target insertfragmentextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 52%] Built target insertfragmentextension make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 53%] Built target povrayextension -make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/animationextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 54%] Built target vrmlextension +make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= -make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build +[ 56%] Built target animationextension make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/animationextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 55%] Built target vibrationextension -make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend -[ 57%] Built target animationextension -make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/python /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= +make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build -[ 61%] Built target spectraextension -make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build -[ 63%] Built target orbitalextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 68%] Built target crystallographyextension +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build +[ 61%] Built target crystallographyextension +make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend +[ 62%] Built target vibrationextension +make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 69%] Built target surfaceextension +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/customcolor.dir/build'. +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/python /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/chargecolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/avogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/chargecolor.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/customcolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 69%] Built target customcolor +[ 63%] Built target chargecolor +make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend +[ 67%] Built target spectraextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/smartscolor.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 67%] Built target customcolor make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/smartscolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 70%] Built target chargecolor +[ 67%] Built target atomindexcolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 68%] Built target swcntbuilderextension make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build -[ 70%] Built target smartscolor -[ 70%] Built target atomindexcolor +[ 68%] Built target smartscolor make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/distancecolor.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 71%] Built target swcntbuilderextension +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +[ 70%] Built target orbitalextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 71%] Built target distancecolor -[ 72%] Built target qtaimextension +[ 71%] Built target surfaceextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/residuecolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' @@ -12490,22 +12515,31 @@ make[3]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build -[ 73%] Built target residuecolor -[ 75%] Built target gamessextension +make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build +[ 72%] Built target qtaimextension +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/avogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= +[ 74%] Built target gamessextension +[ 75%] Built target residuecolor make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/distancecolor.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 81%] Built target inputfileextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' +make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build +[ 81%] Built target distancecolor +[ 83%] Built target orcaextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/python/CMakeFiles/python-module.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' -[ 83%] Built target orcaextension [ 87%] Built target python-module make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/src/CMakeFiles/avogadro-app.dir/build'. @@ -13875,9 +13909,9 @@ dh_shlibdeps dh_installdeb dh_gencontrol +dpkg-gencontrol: warning: package python-avogadro: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package libavogadro-dev: substitution variable ${sip:Depends} unused, but is defined dpkg-gencontrol: warning: package avogadro: substitution variable ${sip:Depends} unused, but is defined -dpkg-gencontrol: warning: package python-avogadro: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package libavogadro1: substitution variable ${sip:Depends} unused, but is defined dpkg-gencontrol: warning: package avogadro-data: substitution variable ${sip:Depends} unused, but is defined dpkg-gencontrol: warning: package python-avogadro: substitution variable ${python:Versions} unused, but is defined @@ -13885,26 +13919,28 @@ dpkg-gencontrol: warning: package libavogadro1: substitution variable ${sip:Depends} unused, but is defined dh_md5sums dh_builddeb +dpkg-deb: building package 'libavogadro1' in '../libavogadro1_1.2.0-4_amd64.deb'. dpkg-deb: building package 'avogadro-dbgsym' in '../avogadro-dbgsym_1.2.0-4_amd64.deb'. -dpkg-deb: building package 'avogadro-data' in '../avogadro-data_1.2.0-4_all.deb'. -dpkg-deb: building package 'avogadro' in '../avogadro_1.2.0-4_amd64.deb'. dpkg-deb: building package 'libavogadro1-dbgsym' in '../libavogadro1-dbgsym_1.2.0-4_amd64.deb'. dpkg-deb: building package 'libavogadro-dev' in '../libavogadro-dev_1.2.0-4_amd64.deb'. -dpkg-deb: building package 'libavogadro1' in '../libavogadro1_1.2.0-4_amd64.deb'. -dpkg-deb: building package 'python-avogadro' in '../python-avogadro_1.2.0-4_amd64.deb'. +dpkg-deb: building package 'avogadro-data' in '../avogadro-data_1.2.0-4_all.deb'. dpkg-deb: building package 'python-avogadro-dbgsym' in '../python-avogadro-dbgsym_1.2.0-4_amd64.deb'. +dpkg-deb: building package 'avogadro' in '../avogadro_1.2.0-4_amd64.deb'. +dpkg-deb: building package 'python-avogadro' in '../python-avogadro_1.2.0-4_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../avogadro_1.2.0-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/63354/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/63354/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/360 and its subdirectories -I: Current time: Fri Sep 9 10:54:26 -12 2022 -I: pbuilder-time-stamp: 1662764066 +I: removing directory /srv/workspace/pbuilder/63354 and its subdirectories +I: Current time: Sun Aug 8 06:36:27 +14 2021 +I: pbuilder-time-stamp: 1628354187