Diff of the two buildlogs: -- --- b1/build.log 2021-06-23 15:09:48.572059776 +0000 +++ b2/build.log 2021-06-23 15:31:17.579719961 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jul 26 09:28:24 -12 2022 -I: pbuilder-time-stamp: 1658870904 +I: Current time: Thu Jun 24 05:09:53 +14 2021 +I: pbuilder-time-stamp: 1624460993 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./staden-io-lib_1.14.13-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.KFtBhkC4/trustedkeys.kbx': General error -gpgv: Signature made Mon Jul 27 22:42:51 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.k7e8ap3a/trustedkeys.kbx': General error +gpgv: Signature made Wed Jul 29 00:42:51 2020 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./staden-io-lib_1.14.13-4.dsc @@ -33,137 +33,171 @@ dpkg-source: info: applying usedebianhtscodecs.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/12542/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/13324/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/13324/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/13324/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='87e0512d7faa4fff8e3e82ff59d2a6d1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='12542' - PS1='# ' - PS2='> ' + INVOCATION_ID=5d1a2cd77c3a4709a5d7b39d96a693df + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=13324 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.WtnE47IzXW/pbuilderrc_rHA2 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.WtnE47IzXW/b1 --logfile b1/build.log staden-io-lib_1.14.13-4.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.WtnE47IzXW/pbuilderrc_5O0U --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.WtnE47IzXW/b2 --logfile b2/build.log --extrapackages usrmerge staden-io-lib_1.14.13-4.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos16-i386 4.19.0-17-amd64 #1 SMP Debian 4.19.194-1 (2021-06-10) x86_64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-17-686-pae #1 SMP Debian 4.19.194-1 (2021-06-10) i686 GNU/Linux I: ls -l /bin total 5776 - -rwxr-xr-x 1 root root 1367848 Jun 21 2021 bash - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat - -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown - -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp - -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash - -rwxr-xr-x 1 root root 124904 Sep 22 2020 date - -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd - -rwxr-xr-x 1 root root 100752 Sep 22 2020 df - -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir - -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 34664 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt - -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln - -rwxr-xr-x 1 root root 55572 Feb 7 2020 login - -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls - -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk - -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 58920 Feb 7 2021 more - -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount - -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint - -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash - -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm - -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 25 03:46 sh -> dash - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty - -rwsr-xr-x 1 root root 79396 Feb 7 2021 su - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync - -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar - -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch - -rwxr-xr-x 1 root root 34664 Sep 22 2020 true - -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount - -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/12542/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1367848 Jun 22 16:25 bash + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat + -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown + -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp + -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash + -rwxr-xr-x 1 root root 124904 Sep 23 2020 date + -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd + -rwxr-xr-x 1 root root 100752 Sep 23 2020 df + -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir + -rwxr-xr-x 1 root root 83644 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 34664 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 71928 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 30112 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 100952 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln + -rwxr-xr-x 1 root root 55572 Feb 8 2020 login + -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls + -rwxr-xr-x 1 root root 153124 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 58920 Feb 8 04:38 more + -rwsr-xr-x 1 root root 50720 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 13856 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:25 rbash -> bash + -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm + -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jun 24 05:13 sh -> bash + lrwxrwxrwx 1 root root 4 Jun 22 23:26 sh.distrib -> dash + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty + -rwsr-xr-x 1 root root 79396 Feb 8 04:38 su + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync + -rwxr-xr-x 1 root root 602584 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch + -rwxr-xr-x 1 root root 34664 Sep 23 2020 true + -rwxr-xr-x 1 root root 17768 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 63024 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/13324/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -253,7 +287,7 @@ Get: 43 http://deb.debian.org/debian bullseye/main i386 libhtscodecs2 i386 0.5-3 [53.1 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libhtscodecs-dev i386 0.5-3 [2518 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] -Fetched 23.3 MB in 0s (88.5 MB/s) +Fetched 23.3 MB in 3s (8940 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) @@ -448,8 +482,44 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1633 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21933 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/staden-io-lib-1.14.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/staden-io-lib-1.14.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package staden-io-lib dpkg-buildpackage: info: source version 1.14.13-4 dpkg-buildpackage: info: source distribution unstable @@ -459,7 +529,7 @@ debian/rules clean dh clean --no-parallel debian/rules override_dh_auto_clean -make[1]: Entering directory '/build/staden-io-lib-1.14.13' +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird betreten dh_auto_clean rm -f tests/.done tests/data/ce\#sorted.sam tests/data/ce\#unsorted.sam rm -f config.sub config.guess @@ -475,7 +545,7 @@ # echo "Upstream has bumped ABI to ${UPSTREAMABI} but Debian is using libstaden-read${DEBABI} (see bug #710225)" ; \ # exit 1 ; \ #fi -make[1]: Leaving directory '/build/staden-io-lib-1.14.13' +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird verlassen dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary @@ -497,12 +567,12 @@ configure.ac:10: installing './missing' io_lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure -make[1]: Entering directory '/build/staden-io-lib-1.14.13' +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird betreten export ac_cv_func_mmap_fixed_mapped=yes && dh_auto_configure ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes -checking for a thread-safe mkdir -p... /bin/mkdir -p +checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes @@ -523,10 +593,10 @@ checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf -checking for a sed that does not truncate output... /bin/sed -checking for grep that handles long lines and -e... /bin/grep -checking for egrep... /bin/grep -E -checking for fgrep... /bin/grep -F +checking for a sed that does not truncate output... /usr/bin/sed +checking for grep that handles long lines and -e... /usr/bin/grep +checking for egrep... /usr/bin/grep -E +checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B @@ -546,8 +616,8 @@ checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no -checking for a working dd... /bin/dd -checking how to truncate binary pipes... /bin/dd bs=4096 count=1 +checking for a working dd... /usr/bin/dd +checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E @@ -577,7 +647,7 @@ checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes -checking for grep that handles long lines and -e... (cached) /bin/grep +checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for C compiler warning flags... -Wall checking for gawk... (cached) mawk checking for curl-config... /usr/bin/curl-config @@ -646,114 +716,114 @@ config.status: creating io_lib_config.h config.status: executing depfiles commands config.status: executing libtool commands -make[1]: Leaving directory '/build/staden-io-lib-1.14.13' +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird verlassen dh_auto_build -O--no-parallel make -j1 -make[1]: Entering directory '/build/staden-io-lib-1.14.13' +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird betreten make all-recursive -make[2]: Entering directory '/build/staden-io-lib-1.14.13' +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird betreten Making all in io_lib -make[3]: Entering directory '/build/staden-io-lib-1.14.13/io_lib' -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13/io_lib“ wird betreten +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c Read.c -fPIC -DPIC -o .libs/libstaden_read_la-Read.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c Read.c -o libstaden_read_la-Read.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c scf_extras.c -fPIC -DPIC -o .libs/libstaden_read_la-scf_extras.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c scf_extras.c -o libstaden_read_la-scf_extras.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-translate.lo `test -f 'translate.c' || echo './'`translate.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-translate.lo `test -f 'translate.c' || echo './'`translate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -fPIC -DPIC -o .libs/libstaden_read_la-translate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -o libstaden_read_la-translate.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-compression.lo `test -f 'compression.c' || echo './'`compression.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-compression.lo `test -f 'compression.c' || echo './'`compression.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c compression.c -fPIC -DPIC -o .libs/libstaden_read_la-compression.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c compression.c -o libstaden_read_la-compression.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-ztr.lo `test -f 'ztr.c' || echo './'`ztr.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-ztr.lo `test -f 'ztr.c' || echo './'`ztr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c ztr.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c ztr.c -o libstaden_read_la-ztr.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-ztr_translate.lo `test -f 'ztr_translate.c' || echo './'`ztr_translate.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-ztr_translate.lo `test -f 'ztr_translate.c' || echo './'`ztr_translate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c ztr_translate.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr_translate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c ztr_translate.c -o libstaden_read_la-ztr_translate.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-deflate_interlaced.lo `test -f 'deflate_interlaced.c' || echo './'`deflate_interlaced.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-deflate_interlaced.lo `test -f 'deflate_interlaced.c' || echo './'`deflate_interlaced.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c deflate_interlaced.c -fPIC -DPIC -o .libs/libstaden_read_la-deflate_interlaced.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c deflate_interlaced.c -o libstaden_read_la-deflate_interlaced.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-fpoint.lo `test -f 'fpoint.c' || echo './'`fpoint.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-fpoint.lo `test -f 'fpoint.c' || echo './'`fpoint.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c fpoint.c -fPIC -DPIC -o .libs/libstaden_read_la-fpoint.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c fpoint.c -o libstaden_read_la-fpoint.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-seqIOABI.lo `test -f 'seqIOABI.c' || echo './'`seqIOABI.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-seqIOABI.lo `test -f 'seqIOABI.c' || echo './'`seqIOABI.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c seqIOABI.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOABI.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c seqIOABI.c -o libstaden_read_la-seqIOABI.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-seqIOALF.lo `test -f 'seqIOALF.c' || echo './'`seqIOALF.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-seqIOALF.lo `test -f 'seqIOALF.c' || echo './'`seqIOALF.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c seqIOALF.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOALF.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c seqIOALF.c -o libstaden_read_la-seqIOALF.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-expFileIO.lo `test -f 'expFileIO.c' || echo 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-fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-bgzip.lo `test -f 'bgzip.c' || echo './'`bgzip.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-bgzip.lo `test -f 'bgzip.c' || echo './'`bgzip.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c bgzip.c -fPIC -DPIC -o .libs/libstaden_read_la-bgzip.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c bgzip.c -o libstaden_read_la-bgzip.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 15:0:1 -Wl,-z,relro -Wl,-z,now -o libstaden-read.la -rpath /usr/lib/i386-linux-gnu libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo 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"libstaden-read.so") libtool: link: ar cr .libs/libstaden-read.a libstaden_read_la-Read.o libstaden_read_la-scf_extras.o libstaden_read_la-translate.o libstaden_read_la-compression.o libstaden_read_la-ztr.o libstaden_read_la-ztr_translate.o libstaden_read_la-deflate_interlaced.o libstaden_read_la-fpoint.o libstaden_read_la-seqIOABI.o libstaden_read_la-seqIOALF.o libstaden_read_la-expFileIO.o libstaden_read_la-seqIOPlain.o libstaden_read_la-misc_scf.o libstaden_read_la-read_scf.o libstaden_read_la-write_scf.o libstaden_read_la-sff.o libstaden_read_la-srf.o libstaden_read_la-array.o libstaden_read_la-compress.o libstaden_read_la-error.o libstaden_read_la-files.o libstaden_read_la-find.o libstaden_read_la-mach-io.o libstaden_read_la-open_trace_file.o libstaden_read_la-read_alloc.o libstaden_read_la-strings.o libstaden_read_la-traceType.o libstaden_read_la-xalloc.o libstaden_read_la-vlen.o libstaden_read_la-hash_table.o libstaden_read_la-jenkins_lookup3.o libstaden_read_la-mFILE.o 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betreten gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o convert_trace.o convert_trace.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o convert_trace convert_trace.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o convert_trace convert_trace.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/convert_trace convert_trace.o ../io_lib/.libs/libstaden-read.so -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o makeSCF.o makeSCF.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o makeSCF makeSCF.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o makeSCF makeSCF.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/makeSCF makeSCF.o ../io_lib/.libs/libstaden-read.so -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o extract_seq.o extract_seq.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o extract_seq extract_seq.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o extract_seq extract_seq.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/extract_seq extract_seq.o ../io_lib/.libs/libstaden-read.so -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o extract_qual.o extract_qual.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o extract_qual extract_qual.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o extract_qual extract_qual.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/extract_qual extract_qual.o ../io_lib/.libs/libstaden-read.so -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o extract_fastq.o extract_fastq.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o extract_fastq extract_fastq.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o extract_fastq extract_fastq.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security 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-fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o srf_info srf_info.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/srf_info srf_info.o ../io_lib/.libs/libstaden-read.so -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o srf_list.o srf_list.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o srf_list srf_list.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o srf_list srf_list.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/srf_list srf_list.o ../io_lib/.libs/libstaden-read.so -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_exp.o hash_exp.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o hash_exp hash_exp.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o hash_exp hash_exp.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/hash_exp hash_exp.o ../io_lib/.libs/libstaden-read.so -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_dump.o cram_dump.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o cram_dump cram_dump.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o cram_dump cram_dump.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_dump cram_dump.o ../io_lib/.libs/libstaden-read.so -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_index.o cram_index.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o cram_index cram_index.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o cram_index cram_index.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_index cram_index.o ../io_lib/.libs/libstaden-read.so -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scramble.o scramble.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o scramble scramble.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o scramble scramble.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scramble scramble.o ../io_lib/.libs/libstaden-read.so -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_merge.o scram_merge.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o scram_merge scram_merge.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o scram_merge scram_merge.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_merge scram_merge.o ../io_lib/.libs/libstaden-read.so -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_pileup.o scram_pileup.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o scram_pileup scram_pileup.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o scram_pileup scram_pileup.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_pileup scram_pileup.o ../io_lib/.libs/libstaden-read.so -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_flagstat.o scram_flagstat.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o scram_flagstat scram_flagstat.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o scram_flagstat scram_flagstat.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_flagstat scram_flagstat.o ../io_lib/.libs/libstaden-read.so -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_test.o scram_test.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o scram_test scram_test.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o scram_test scram_test.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_test scram_test.o ../io_lib/.libs/libstaden-read.so -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_size.o cram_size.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o cram_size cram_size.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o cram_size cram_size.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_size cram_size.o ../io_lib/.libs/libstaden-read.so -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_filter.o cram_filter.c -/bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o cram_filter cram_filter.o ../io_lib/libstaden-read.la -lm -lpthread +/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o cram_filter cram_filter.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/build/staden-io-lib-1.14.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_filter cram_filter.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -make[3]: Leaving directory '/build/staden-io-lib-1.14.13/progs' +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13/progs“ wird verlassen Making all in tests -make[3]: Entering directory '/build/staden-io-lib-1.14.13/tests' +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13/tests“ wird betreten gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 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-make[3]: Entering directory '/build/staden-io-lib-1.14.13' -make[3]: Leaving directory '/build/staden-io-lib-1.14.13' -make[2]: Leaving directory '/build/staden-io-lib-1.14.13' -make[1]: Leaving directory '/build/staden-io-lib-1.14.13' +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13/tests“ wird verlassen +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird betreten +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird verlassen +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird verlassen +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird verlassen debian/rules override_dh_auto_test-indep -make[1]: Entering directory '/build/staden-io-lib-1.14.13' +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird betreten echo "Do not run test suite for architecture independent builds" Do not run test suite for architecture independent builds -make[1]: Leaving directory '/build/staden-io-lib-1.14.13' +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird verlassen dh_auto_test -O--no-parallel -Nstaden-io-lib-examples make -j1 check VERBOSE=1 -make[1]: Entering directory '/build/staden-io-lib-1.14.13' +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird betreten Making check in io_lib -make[2]: Entering directory '/build/staden-io-lib-1.14.13/io_lib' -make[2]: Nothing to be done for 'check'. -make[2]: Leaving directory '/build/staden-io-lib-1.14.13/io_lib' +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13/io_lib“ wird betreten +make[2]: Für das Ziel „check“ ist nichts zu tun. +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13/io_lib“ wird verlassen Making check in progs -make[2]: Entering directory '/build/staden-io-lib-1.14.13/progs' -make[2]: Nothing to be done for 'check'. -make[2]: Leaving directory '/build/staden-io-lib-1.14.13/progs' +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13/progs“ wird betreten +make[2]: Für das Ziel „check“ ist nichts zu tun. +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13/progs“ wird verlassen Making check in tests -make[2]: Entering directory '/build/staden-io-lib-1.14.13/tests' +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13/tests“ wird betreten make check-TESTS -make[3]: Entering directory '/build/staden-io-lib-1.14.13/tests' +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13/tests“ wird betreten PASS: srf2fasta.test PASS: srf2fastq.test PASS: srf_info.test @@ -5646,22 +5716,22 @@ =================== All 11 tests passed =================== -make[3]: Leaving directory '/build/staden-io-lib-1.14.13/tests' -make[2]: Leaving directory '/build/staden-io-lib-1.14.13/tests' -make[2]: Entering directory '/build/staden-io-lib-1.14.13' -make[2]: Leaving directory '/build/staden-io-lib-1.14.13' -make[1]: Leaving directory '/build/staden-io-lib-1.14.13' +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13/tests“ wird verlassen +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13/tests“ wird verlassen +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird betreten +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird verlassen +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird verlassen create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel dh_auto_install -O--no-parallel make -j1 install DESTDIR=/build/staden-io-lib-1.14.13/debian/tmp AM_UPDATE_INFO_DIR=no -make[1]: Entering directory '/build/staden-io-lib-1.14.13' +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird betreten Making install in io_lib -make[2]: Entering directory '/build/staden-io-lib-1.14.13/io_lib' -make[3]: Entering directory '/build/staden-io-lib-1.14.13/io_lib' - /bin/mkdir -p '/build/staden-io-lib-1.14.13/debian/tmp/usr/lib/i386-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libstaden-read.la '/build/staden-io-lib-1.14.13/debian/tmp/usr/lib/i386-linux-gnu' +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13/io_lib“ wird betreten +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13/io_lib“ wird betreten + /usr/bin/mkdir -p '/build/staden-io-lib-1.14.13/debian/tmp/usr/lib/i386-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libstaden-read.la '/build/staden-io-lib-1.14.13/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libstaden-read.so.14.1.0 /build/staden-io-lib-1.14.13/debian/tmp/usr/lib/i386-linux-gnu/libstaden-read.so.14.1.0 libtool: install: (cd /build/staden-io-lib-1.14.13/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libstaden-read.so.14.1.0 libstaden-read.so.14 || { rm -f libstaden-read.so.14 && ln -s libstaden-read.so.14.1.0 libstaden-read.so.14; }; }) libtool: install: (cd /build/staden-io-lib-1.14.13/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libstaden-read.so.14.1.0 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.14.1.0 libstaden-read.so; }; }) @@ -5670,14 +5740,14 @@ libtool: install: chmod 644 /build/staden-io-lib-1.14.13/debian/tmp/usr/lib/i386-linux-gnu/libstaden-read.a libtool: install: ranlib /build/staden-io-lib-1.14.13/debian/tmp/usr/lib/i386-linux-gnu/libstaden-read.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' -make[3]: Nothing to be done for 'install-data-am'. -make[3]: Leaving directory '/build/staden-io-lib-1.14.13/io_lib' -make[2]: Leaving directory '/build/staden-io-lib-1.14.13/io_lib' +make[3]: Für das Ziel „install-data-am“ ist nichts zu tun. +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13/io_lib“ wird verlassen +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13/io_lib“ wird verlassen Making install in progs -make[2]: Entering directory '/build/staden-io-lib-1.14.13/progs' -make[3]: Entering directory '/build/staden-io-lib-1.14.13/progs' - /bin/mkdir -p '/build/staden-io-lib-1.14.13/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c convert_trace makeSCF extract_seq extract_qual extract_fastq index_tar scf_dump scf_info scf_update get_comment hash_tar hash_extract hash_list trace_dump hash_sff append_sff ztr_dump srf_dump_all srf_index_hash srf_extract_linear srf_extract_hash srf2fastq srf2fasta srf_filter srf_info srf_list hash_exp cram_dump cram_index scramble scram_merge scram_pileup scram_flagstat scram_test cram_size cram_filter '/build/staden-io-lib-1.14.13/debian/tmp/usr/bin' +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13/progs“ wird betreten +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13/progs“ wird betreten + /usr/bin/mkdir -p '/build/staden-io-lib-1.14.13/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c convert_trace makeSCF extract_seq extract_qual extract_fastq index_tar scf_dump scf_info scf_update get_comment hash_tar hash_extract hash_list trace_dump hash_sff append_sff ztr_dump srf_dump_all srf_index_hash srf_extract_linear srf_extract_hash srf2fastq srf2fasta srf_filter srf_info srf_list hash_exp cram_dump cram_index scramble scram_merge scram_pileup scram_flagstat scram_test cram_size cram_filter '/build/staden-io-lib-1.14.13/debian/tmp/usr/bin' libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/convert_trace /build/staden-io-lib-1.14.13/debian/tmp/usr/bin/convert_trace libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/i386-linux-gnu' @@ -5749,34 +5819,34 @@ libtool: install: /usr/bin/install -c .libs/cram_size /build/staden-io-lib-1.14.13/debian/tmp/usr/bin/cram_size libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/cram_filter /build/staden-io-lib-1.14.13/debian/tmp/usr/bin/cram_filter -make[3]: Nothing to be done for 'install-data-am'. -make[3]: Leaving directory '/build/staden-io-lib-1.14.13/progs' -make[2]: Leaving directory '/build/staden-io-lib-1.14.13/progs' +make[3]: Für das Ziel „install-data-am“ ist nichts zu tun. +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13/progs“ wird verlassen +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13/progs“ wird verlassen Making install in tests -make[2]: Entering directory '/build/staden-io-lib-1.14.13/tests' -make[3]: Entering directory '/build/staden-io-lib-1.14.13/tests' -make[3]: Nothing to be done for 'install-exec-am'. -make[3]: Nothing to be done for 'install-data-am'. -make[3]: Leaving directory '/build/staden-io-lib-1.14.13/tests' -make[2]: Leaving directory '/build/staden-io-lib-1.14.13/tests' -make[2]: Entering directory '/build/staden-io-lib-1.14.13' -make[3]: Entering directory '/build/staden-io-lib-1.14.13' - /bin/mkdir -p '/build/staden-io-lib-1.14.13/debian/tmp/usr/bin' +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13/tests“ wird betreten +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13/tests“ wird betreten +make[3]: Für das Ziel „install-exec-am“ ist nichts zu tun. +make[3]: Für das Ziel „install-data-am“ ist nichts zu tun. +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13/tests“ wird verlassen +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13/tests“ wird verlassen +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird betreten +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird betreten + /usr/bin/mkdir -p '/build/staden-io-lib-1.14.13/debian/tmp/usr/bin' /usr/bin/install -c io_lib-config '/build/staden-io-lib-1.14.13/debian/tmp/usr/bin' - /bin/mkdir -p '/build/staden-io-lib-1.14.13/debian/tmp/usr/share/man/man1' + /usr/bin/mkdir -p '/build/staden-io-lib-1.14.13/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 man/man1/srf_index_hash.1 man/man1/srf_info.1 man/man1/srf_list.1 man/man1/srf2fasta.1 man/man1/srf2fastq.1 man/man1/scramble.1 '/build/staden-io-lib-1.14.13/debian/tmp/usr/share/man/man1' - /bin/mkdir -p '/build/staden-io-lib-1.14.13/debian/tmp/usr/share/man/man3' + /usr/bin/mkdir -p '/build/staden-io-lib-1.14.13/debian/tmp/usr/share/man/man3' /usr/bin/install -c -m 644 man/man3/read_scf_header.3 man/man3/read_allocate.3 man/man3/ExperimentFile.3 man/man3/write_reading.3 man/man3/write_scf.3 man/man3/read_deallocate.3 man/man3/fwrite_reading.3 man/man3/read2scf.3 man/man3/scf2read.3 man/man3/fwrite_scf.3 man/man3/write_scf_header.3 man/man3/read_reading.3 man/man3/read_scf.3 man/man3/exp2read.3 man/man3/fread_reading.3 man/man3/read2exp.3 man/man3/fread_scf.3 '/build/staden-io-lib-1.14.13/debian/tmp/usr/share/man/man3' - /bin/mkdir -p '/build/staden-io-lib-1.14.13/debian/tmp/usr/share/man/man4' + /usr/bin/mkdir -p '/build/staden-io-lib-1.14.13/debian/tmp/usr/share/man/man4' /usr/bin/install -c -m 644 man/man4/Read.4 '/build/staden-io-lib-1.14.13/debian/tmp/usr/share/man/man4' - /bin/mkdir -p '/build/staden-io-lib-1.14.13/debian/tmp/usr/include/io_lib' + /usr/bin/mkdir -p '/build/staden-io-lib-1.14.13/debian/tmp/usr/include/io_lib' /usr/bin/install -c -m 644 io_lib/Read.h io_lib/scf_extras.h io_lib/translate.h io_lib/abi.h io_lib/fpoint.h io_lib/seqIOABI.h io_lib/alf.h io_lib/expFileIO.h io_lib/plain.h io_lib/scf.h io_lib/sff.h io_lib/array.h io_lib/compress.h io_lib/error.h io_lib/mach-io.h io_lib/misc.h io_lib/open_trace_file.h io_lib/tar_format.h io_lib/traceType.h io_lib/xalloc.h io_lib/mFILE.h io_lib/stdio_hack.h io_lib/vlen.h io_lib/hash_table.h io_lib/jenkins_lookup3.h io_lib/os.h io_lib/compression.h io_lib/ztr.h io_lib/deflate_interlaced.h io_lib/srf.h io_lib/pooled_alloc.h io_lib/cram.h io_lib/cram_structs.h io_lib/cram_io.h io_lib/cram_encode.h io_lib/cram_decode.h io_lib/cram_codecs.h io_lib/cram_index.h io_lib/cram_stats.h io_lib/cram_bambam.h '/build/staden-io-lib-1.14.13/debian/tmp/usr/include/io_lib' /usr/bin/install -c -m 644 io_lib/zfio.h io_lib/scram.h io_lib/bam.h io_lib/sam_header.h io_lib/dstring.h io_lib/string_alloc.h io_lib/md5.h io_lib/thread_pool.h io_lib/binning.h io_lib/bgzip.h io_lib/version.h '/build/staden-io-lib-1.14.13/debian/tmp/usr/include/io_lib' -make[3]: Leaving directory '/build/staden-io-lib-1.14.13' -make[2]: Leaving directory '/build/staden-io-lib-1.14.13' -make[1]: Leaving directory '/build/staden-io-lib-1.14.13' +make[3]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird verlassen +make[2]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird verlassen +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird verlassen debian/rules override_dh_install-arch -make[1]: Entering directory '/build/staden-io-lib-1.14.13' +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird betreten dh_install -a mkdir -p /build/staden-io-lib-1.14.13/debian/libstaden-read-dev/usr/bin mv /build/staden-io-lib-1.14.13/debian/staden-io-lib-utils/usr/bin/io_lib-config /build/staden-io-lib-1.14.13/debian/libstaden-read-dev/usr/bin @@ -5808,9 +5878,9 @@ cp /build/staden-io-lib-1.14.13/io_lib_config.h /build/staden-io-lib-1.14.13/debian/libstaden-read-dev/usr/include/io_lib/ # make sure io_lib-config --libs will not return -pie (see #825461) find debian/*/usr/bin -name io_lib-config -exec sed -i -e 's/ *-fPIE//' -e 's/ *-pie//' \{\} \; -make[1]: Leaving directory '/build/staden-io-lib-1.14.13' +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird verlassen debian/rules override_dh_install-indep -make[1]: Entering directory '/build/staden-io-lib-1.14.13' +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird betreten dh_install -i mkdir -p debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test # fix path to staden-io-lib executable in examples @@ -5819,7 +5889,7 @@ done # remove autogenerated big data files rm -f debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/data/ce\#*sorted.sam -make[1]: Leaving directory '/build/staden-io-lib-1.14.13' +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird verlassen dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installman -O--no-parallel @@ -5830,10 +5900,10 @@ dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel debian/rules override_dh_fixperms-indep -make[1]: Entering directory '/build/staden-io-lib-1.14.13' +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird betreten dh_fixperms chmod +x debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/*.test debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/*.pl -make[1]: Leaving directory '/build/staden-io-lib-1.14.13' +make[1]: Verzeichnis „/build/staden-io-lib-1.14.13“ wird verlassen dh_fixperms -O--no-parallel -Nstaden-io-lib-examples dh_missing -O--no-parallel -Nstaden-io-lib-examples dh_dwz -a -O--no-parallel @@ -5844,24 +5914,26 @@ dh_gencontrol -O--no-parallel dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel -dpkg-deb: building package 'staden-io-lib-utils' in '../staden-io-lib-utils_1.14.13-4_i386.deb'. -dpkg-deb: building package 'staden-io-lib-utils-dbgsym' in '../staden-io-lib-utils-dbgsym_1.14.13-4_i386.deb'. -dpkg-deb: building package 'libstaden-read14' in '../libstaden-read14_1.14.13-4_i386.deb'. -dpkg-deb: building package 'libstaden-read-dev' in '../libstaden-read-dev_1.14.13-4_i386.deb'. -dpkg-deb: building package 'libstaden-read14-dbgsym' in '../libstaden-read14-dbgsym_1.14.13-4_i386.deb'. -dpkg-deb: building package 'staden-io-lib-examples' in '../staden-io-lib-examples_1.14.13-4_all.deb'. +dpkg-deb: Paket »staden-io-lib-utils-dbgsym« wird in »../staden-io-lib-utils-dbgsym_1.14.13-4_i386.deb« gebaut. +dpkg-deb: Paket »libstaden-read14-dbgsym« wird in »../libstaden-read14-dbgsym_1.14.13-4_i386.deb« gebaut. +dpkg-deb: Paket »staden-io-lib-utils« wird in »../staden-io-lib-utils_1.14.13-4_i386.deb« gebaut. +dpkg-deb: Paket »libstaden-read14« wird in »../libstaden-read14_1.14.13-4_i386.deb« gebaut. +dpkg-deb: Paket »libstaden-read-dev« wird in »../libstaden-read-dev_1.14.13-4_i386.deb« gebaut. +dpkg-deb: Paket »staden-io-lib-examples« wird in »../staden-io-lib-examples_1.14.13-4_all.deb« gebaut. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../staden-io-lib_1.14.13-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/13324/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/13324/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/12542 and its subdirectories -I: Current time: Tue Jul 26 09:32:47 -12 2022 -I: pbuilder-time-stamp: 1658871167 +I: removing directory /srv/workspace/pbuilder/13324 and its subdirectories +I: Current time: Thu Jun 24 05:31:16 +14 2021 +I: pbuilder-time-stamp: 1624462276