Diff of the two buildlogs: -- --- b1/build.log 2021-08-10 05:50:54.562443177 +0000 +++ b2/build.log 2021-08-10 06:02:25.232660995 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Sep 12 00:12:41 -12 2022 -I: pbuilder-time-stamp: 1662984761 +I: Current time: Tue Aug 10 19:51:09 +14 2021 +I: pbuilder-time-stamp: 1628574669 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./seqkit_0.15.0+ds-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.1zqiIUkY/trustedkeys.kbx': General error -gpgv: Signature made Wed Jan 27 08:38:32 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.us2mIUlF/trustedkeys.kbx': General error +gpgv: Signature made Thu Jan 28 10:38:32 2021 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -31,137 +31,171 @@ dpkg-source: info: applying spellings.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/12795/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/14273/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/14273/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/14273/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=7' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='8c1074adfd5e436ca6c7796642a0499f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='12795' - PS1='# ' - PS2='> ' + INVOCATION_ID=8e141ebd302a401e97c82fc80cee032b + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=14273 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.2PKCINefZB/pbuilderrc_0QfL --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.2PKCINefZB/b1 --logfile b1/build.log seqkit_0.15.0+ds-2.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.2PKCINefZB/pbuilderrc_IbXi --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.2PKCINefZB/b2 --logfile b2/build.log --extrapackages usrmerge seqkit_0.15.0+ds-2.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos16-i386 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-17-686-pae #1 SMP Debian 4.19.194-3 (2021-07-18) i686 GNU/Linux I: ls -l /bin - total 5776 - -rwxr-xr-x 1 root root 1367848 Aug 4 2021 bash - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat - -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown - -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp - -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash - -rwxr-xr-x 1 root root 124904 Sep 22 2020 date - -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd - -rwxr-xr-x 1 root root 100752 Sep 22 2020 df - -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir - -rwxr-xr-x 1 root root 83644 Jul 28 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 34664 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 71928 Jul 28 2021 findmnt - -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln - -rwxr-xr-x 1 root root 55572 Feb 7 2020 login - -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls - -rwxr-xr-x 1 root root 153124 Jul 28 2021 lsblk - -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 58920 Jul 28 2021 more - -rwsr-xr-x 1 root root 50720 Jul 28 2021 mount - -rwxr-xr-x 1 root root 13856 Jul 28 2021 mountpoint - -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash - -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm - -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 10 03:46 sh -> dash - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty - -rwsr-xr-x 1 root root 79396 Jul 28 2021 su - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync - -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar - -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch - -rwxr-xr-x 1 root root 34664 Sep 22 2020 true - -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Jul 28 2021 umount - -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 63024 Jul 28 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/12795/tmp/hooks/D02_print_environment finished + total 5792 + -rwxr-xr-x 1 root root 1367848 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat + -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown + -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp + -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash + -rwxr-xr-x 1 root root 124904 Sep 23 2020 date + -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd + -rwxr-xr-x 1 root root 100752 Sep 23 2020 df + -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir + -rwxr-xr-x 1 root root 83644 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 34664 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 71928 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 30112 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 100952 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln + -rwxr-xr-x 1 root root 55572 Feb 8 2020 login + -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls + -rwxr-xr-x 1 root root 153124 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 58920 Jul 29 09:09 more + -rwsr-xr-x 1 root root 50720 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 13856 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm + -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 10 19:56 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 8 23:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty + -rwsr-xr-x 1 root root 79396 Jul 29 09:09 su + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync + -rwxr-xr-x 1 root root 602584 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch + -rwxr-xr-x 1 root root 34664 Sep 23 2020 true + -rwxr-xr-x 1 root root 17768 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 63024 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/14273/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -359,7 +393,7 @@ Get: 118 http://deb.debian.org/debian bullseye/main i386 libhts3 i386 1.11-4 [408 kB] Get: 119 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2 [110 kB] Get: 120 http://deb.debian.org/debian bullseye/main i386 samtools i386 1.11-1 [576 kB] -Fetched 113 MB in 3s (34.4 MB/s) +Fetched 113 MB in 24s (4680 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) @@ -854,8 +888,44 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (2665 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37548 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/seqkit-0.15.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/seqkit-0.15.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package seqkit dpkg-buildpackage: info: source version 0.15.0+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -873,224 +943,224 @@ dh_autoreconf -O--buildsystem=golang -O--builddirectory=build dh_auto_configure -O--buildsystem=golang -O--builddirectory=build dh_auto_build -O--buildsystem=golang -O--builddirectory=build - cd build && go install -trimpath -v -p 16 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd + cd build && go install -trimpath -v -p 7 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd internal/unsafeheader -internal/nettrace -internal/goversion +internal/race math/bits -crypto/internal/subtle unicode/utf8 -image/color -golang.org/x/sys/internal/unsafeheader -runtime/internal/sys +internal/cpu runtime/internal/atomic -internal/race sync/atomic +runtime/internal/sys +unicode +golang.org/x/sys/internal/unsafeheader +internal/nettrace +runtime/internal/math +internal/testlog +internal/bytealg +math +internal/goversion +image/color golang.org/x/image/math/f64 -internal/cpu encoding -runtime/cgo -unicode +crypto/internal/subtle unicode/utf16 -crypto/subtle +runtime/cgo container/list +image/color/palette +crypto/subtle +runtime vendor/golang.org/x/crypto/cryptobyte/asn1 -runtime/internal/math github.com/shenwei356/util/struct/stack -internal/testlog -image/color/palette -internal/bytealg vendor/golang.org/x/crypto/internal/subtle -math -runtime github.com/shenwei356/util/math internal/reflectlite sync -internal/singleflight math/rand +internal/singleflight github.com/shenwei356/util/randutil -errors sort +errors internal/oserror -io -vendor/golang.org/x/net/dns/dnsmessage gonum.org/v1/plot/palette strconv +vendor/golang.org/x/net/dns/dnsmessage +io syscall container/heap github.com/shenwei356/bio/util -crypto/internal/randutil -hash -text/tabwriter bytes +text/tabwriter strings +hash hash/crc32 +reflect hash/adler32 -crypto/hmac -vendor/golang.org/x/crypto/hkdf crypto crypto/rc4 +crypto/internal/randutil +crypto/hmac vendor/golang.org/x/text/transform github.com/shenwei356/bpool -reflect github.com/biogo/biogo/feat -path bufio +path regexp/syntax html -image -internal/syscall/unix +vendor/golang.org/x/crypto/hkdf internal/syscall/execenv +internal/syscall/unix time +image regexp image/internal/imageutil image/draw image/jpeg -github.com/shenwei356/natsort -golang.org/x/image/draw -context internal/poll +context +golang.org/x/image/draw +github.com/shenwei356/natsort internal/fmtsort -encoding/binary os -encoding/base64 -golang.org/x/image/ccitt -crypto/md5 -crypto/sha256 -index/suffixarray -vendor/golang.org/x/crypto/poly1305 +encoding/binary crypto/sha1 -crypto/sha512 -crypto/cipher -crypto/ed25519/internal/edwards25519 -github.com/cespare/xxhash +crypto/md5 +golang.org/x/image/ccitt +encoding/base64 golang.org/x/sys/unix -encoding/pem fmt -path/filepath +net internal/lazyregexp -github.com/edsrzf/mmap-go +path/filepath runtime/debug -github.com/mattn/go-runewidth -os/signal -net -crypto/aes -crypto/des -vendor/golang.org/x/crypto/chacha20 -io/ioutil -os/exec -vendor/golang.org/x/crypto/chacha20poly1305 -github.com/mitchellh/go-homedir +github.com/cespare/xxhash +crypto/cipher +github.com/biogo/biogo/alphabet log +compress/flate encoding/hex -github.com/biogo/biogo/alphabet net/url golang.org/x/image/math/fixed -compress/flate go/token -golang.org/x/image/tiff/lzw -internal/execabs -text/template/parse -encoding/json -encoding/xml -compress/lzw -encoding/gob -math/big -internal/goroot -github.com/iafan/cwalk -github.com/logrusorgru/aurora -go/scanner github.com/golang/freetype/raster -golang.org/x/image/font -image/gif -github.com/pkg/errors -github.com/klauspost/compress/flate github.com/biogo/biogo/seq -golang.org/x/image/font/basicfont -vendor/golang.org/x/crypto/curve25519 -go/ast -vendor/golang.org/x/text/unicode/bidi -vendor/golang.org/x/text/unicode/norm +golang.org/x/image/font +compress/gzip github.com/biogo/biogo/io/seqio -github.com/golang/freetype/truetype github.com/biogo/biogo/seq/linear -github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/align github.com/mattn/go-isatty -compress/gzip +github.com/biogo/biogo/io/seqio/fasta +github.com/biogo/hts/bgzf +github.com/mattn/go-colorable golang.org/x/term github.com/shenwei356/seqkit/benchmark -github.com/mattn/go-colorable -text/template +github.com/golang/freetype/truetype +go/scanner +github.com/biogo/hts/bgzf/index +golang.org/x/crypto/ssh/terminal +go/ast +io/ioutil +github.com/biogo/hts/internal +text/template/parse +os/exec +github.com/biogo/hts/sam +go/parser +internal/execabs +golang.org/x/image/font/basicfont +gonum.org/v1/plot/vg/fonts compress/zlib -github.com/ajstarks/svgo -github.com/biogo/hts/bgzf -github.com/fsnotify/fsnotify -vendor/golang.org/x/text/secure/bidirule +internal/goroot +golang.org/x/image/tiff/lzw image/png -golang.org/x/crypto/ssh/terminal golang.org/x/image/tiff -vendor/golang.org/x/net/http2/hpack -mime -mime/quotedprintable -github.com/klauspost/pgzip -github.com/biogo/hts/bgzf/index -gonum.org/v1/plot/vg/fonts -go/parser +text/template +github.com/biogo/hts/bam +encoding/gob +encoding/json +github.com/fogleman/gg +encoding/xml +go/doc +compress/lzw +github.com/fsnotify/fsnotify +image/gif +math/big +github.com/iafan/cwalk +github.com/ajstarks/svgo +github.com/mitchellh/go-homedir +github.com/logrusorgru/aurora +github.com/pkg/errors +log/syslog +github.com/jung-kurt/gofpdf +go/build +github.com/klauspost/compress/flate +crypto/aes +github.com/op/go-logging +crypto/des +gonum.org/v1/plot/vg +crypto/sha512 +crypto/ed25519/internal/edwards25519 +crypto/sha256 github.com/cznic/sortutil github.com/dustin/go-humanize +gonum.org/v1/plot/vg/vgeps +gonum.org/v1/plot/vg/vgimg +gonum.org/v1/plot/vg/vgsvg +gonum.org/v1/plot/tools/bezier +github.com/klauspost/pgzip crypto/rand -github.com/biogo/hts/internal crypto/elliptic encoding/asn1 crypto/dsa -github.com/fogleman/gg -github.com/jung-kurt/gofpdf -go/doc -vendor/golang.org/x/net/idna -net/http/internal +encoding/pem crypto/ed25519 +vendor/golang.org/x/crypto/chacha20 crypto/rsa +vendor/golang.org/x/crypto/poly1305 +vendor/golang.org/x/crypto/curve25519 +vendor/golang.org/x/text/unicode/bidi +vendor/golang.org/x/crypto/chacha20poly1305 +vendor/golang.org/x/crypto/cryptobyte +crypto/x509/pkix +vendor/golang.org/x/text/unicode/norm +net/textproto +vendor/golang.org/x/net/http2/hpack +mime +vendor/golang.org/x/text/secure/bidirule +mime/quotedprintable os/user +gonum.org/v1/plot/vg/vgpdf +net/http/internal github.com/shenwei356/util/byteutil -github.com/biogo/hts/sam +mime/multipart +crypto/ecdsa +github.com/edsrzf/mmap-go +gonum.org/v1/plot/vg/draw github.com/shenwei356/bio/seqio/fai -github.com/shenwei356/util/pathutil -gopkg.in/yaml.v2 -encoding/csv +crypto/x509 +vendor/golang.org/x/net/idna github.com/shenwei356/bio/seq +index/suffixarray +github.com/shenwei356/util/pathutil github.com/shenwei356/bwt +gonum.org/v1/plot github.com/shenwei356/util/stringutil -flag -vendor/golang.org/x/crypto/cryptobyte -crypto/x509/pkix +vendor/golang.org/x/net/http/httpguts github.com/shenwei356/bwt/fmi -github.com/tatsushid/go-prettytable -go/build -crypto/ecdsa -github.com/biogo/hts/bam -gonum.org/v1/plot/vg -gonum.org/v1/plot/vg/vgeps -gonum.org/v1/plot/vg/vgimg -gonum.org/v1/plot/tools/bezier -gonum.org/v1/plot/vg/vgsvg -github.com/smallfish/simpleyaml -log/syslog vendor/golang.org/x/net/http/httpproxy -net/textproto -crypto/x509 -github.com/spf13/pflag -github.com/op/go-logging -vendor/golang.org/x/net/http/httpguts -mime/multipart -gonum.org/v1/plot/vg/vgpdf -gonum.org/v1/plot/vg/draw crypto/tls -gonum.org/v1/plot +encoding/csv +gopkg.in/yaml.v2 +github.com/mattn/go-runewidth +flag +os/signal +github.com/tatsushid/go-prettytable gonum.org/v1/plot/plotter -github.com/spf13/cobra +github.com/spf13/pflag +github.com/smallfish/simpleyaml gonum.org/v1/plot/plotutil github.com/bsipos/thist +github.com/spf13/cobra net/http/httptrace net/http github.com/shenwei356/xopen @@ -1100,7 +1170,7 @@ github.com/shenwei356/seqkit/seqkit/cmd github.com/shenwei356/seqkit/seqkit dh_auto_test -O--buildsystem=golang -O--builddirectory=build - cd build && go test -vet=off -v -p 16 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd + cd build && go test -vet=off -v -p 7 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd ? github.com/shenwei356/seqkit/benchmark [no test files] ? github.com/shenwei356/seqkit/seqkit [no test files] ? github.com/shenwei356/seqkit/seqkit/cmd [no test files] @@ -1108,14 +1178,14 @@ dh_testroot -O--buildsystem=golang -O--builddirectory=build dh_prep -O--buildsystem=golang -O--builddirectory=build debian/rules override_dh_auto_install -make[1]: Entering directory '/build/seqkit-0.15.0+ds' +make[1]: Verzeichnis „/build/seqkit-0.15.0+ds“ wird betreten dh_auto_install -- --no-source cd build && mkdir -p /build/seqkit-0.15.0\+ds/debian/tmp/usr cd build && cp -r bin /build/seqkit-0.15.0\+ds/debian/tmp/usr -make[1]: Leaving directory '/build/seqkit-0.15.0+ds' +make[1]: Verzeichnis „/build/seqkit-0.15.0+ds“ wird verlassen dh_install -O--buildsystem=golang -O--builddirectory=build debian/rules override_dh_installdocs -make[1]: Entering directory '/build/seqkit-0.15.0+ds' +make[1]: Verzeichnis „/build/seqkit-0.15.0+ds“ wird betreten # Regenerate bam and bam index files cat debian/missing-sources/pcs109_5k_prim.sam | samtools view -Sb - > tests/pcs109_5k_prim.bam cat debian/missing-sources/pcs109_5k.sam | samtools view -Sb - > tests/pcs109_5k.bam @@ -1124,7 +1194,7 @@ samtools index tests/pcs109_5k.bam tests/pcs109_5k.bam.bai samtools index tests/pcs109_5k_spliced.bam tests/pcs109_5k_spliced.bam.bai dh_installdocs -make[1]: Leaving directory '/build/seqkit-0.15.0+ds' +make[1]: Verzeichnis „/build/seqkit-0.15.0+ds“ wird verlassen dh_installchangelogs -O--buildsystem=golang -O--builddirectory=build dh_installman -O--buildsystem=golang -O--builddirectory=build dh_installsystemduser -O--buildsystem=golang -O--builddirectory=build @@ -1152,20 +1222,22 @@ dpkg-gencontrol: warning: Depends field of package seqkit-examples: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=golang -O--builddirectory=build dh_builddeb -O--buildsystem=golang -O--builddirectory=build -dpkg-deb: building package 'seqkit' in '../seqkit_0.15.0+ds-2_i386.deb'. -dpkg-deb: building package 'seqkit-examples' in '../seqkit-examples_0.15.0+ds-2_all.deb'. +dpkg-deb: Paket »seqkit-examples« wird in »../seqkit-examples_0.15.0+ds-2_all.deb« gebaut. +dpkg-deb: Paket »seqkit« wird in »../seqkit_0.15.0+ds-2_i386.deb« gebaut. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../seqkit_0.15.0+ds-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/14273/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/14273/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/12795 and its subdirectories -I: Current time: Mon Sep 12 00:13:53 -12 2022 -I: pbuilder-time-stamp: 1662984833 +I: removing directory /srv/workspace/pbuilder/14273 and its subdirectories +I: Current time: Tue Aug 10 20:02:24 +14 2021 +I: pbuilder-time-stamp: 1628575344