Diff of the two buildlogs: -- --- b1/build.log 2021-07-19 22:01:02.372504639 +0000 +++ b2/build.log 2021-07-19 22:16:46.732864550 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jul 19 09:42:55 -12 2021 -I: pbuilder-time-stamp: 1626730975 +I: Current time: Mon Aug 22 18:24:04 +14 2022 +I: pbuilder-time-stamp: 1661142244 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./scrappie_1.4.2-7.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.rBOERQ5I/trustedkeys.kbx': General error -gpgv: Signature made Sat Apr 3 07:21:39 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.P0inGT8N/trustedkeys.kbx': General error +gpgv: Signature made Sun Apr 4 09:21:39 2021 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key @@ -30,137 +30,171 @@ dpkg-source: info: applying simde.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/7601/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/54412/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/54412/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/54412/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='d31603c63416405ab7d2d1747453c509' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='7601' - PS1='# ' - PS2='> ' + INVOCATION_ID=dd994fb1880f470ab56dc2a4b825e21c + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=54412 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.gKW3kUdjIV/pbuilderrc_vxV8 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.gKW3kUdjIV/b1 --logfile b1/build.log scrappie_1.4.2-7.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.gKW3kUdjIV/pbuilderrc_gXYj --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.gKW3kUdjIV/b2 --logfile b2/build.log --extrapackages usrmerge scrappie_1.4.2-7.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos2-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-2 (2021-06-21) i686 GNU/Linux + Linux i-capture-the-hostname 4.19.0-17-amd64 #1 SMP Debian 4.19.194-2 (2021-06-21) x86_64 GNU/Linux I: ls -l /bin - total 5796 - -rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat - -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown - -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp - -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash - -rwxr-xr-x 1 root root 124904 Sep 22 2020 date - -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd - -rwxr-xr-x 1 root root 100752 Sep 22 2020 df - -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir - -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 34664 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln - -rwxr-xr-x 1 root root 55572 Feb 7 2020 login - -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls - -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more - -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash - -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm - -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 17 21:27 sh -> dash - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty - -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync - -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch - -rwxr-xr-x 1 root root 34664 Sep 22 2020 true - -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/7601/tmp/hooks/D02_print_environment finished + total 5776 + -rwxr-xr-x 1 root root 1367848 Jun 22 2021 bash + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat + -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown + -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp + -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash + -rwxr-xr-x 1 root root 124904 Sep 23 2020 date + -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd + -rwxr-xr-x 1 root root 100752 Sep 23 2020 df + -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir + -rwxr-xr-x 1 root root 83644 Feb 8 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 34664 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 71928 Feb 8 2021 findmnt + -rwsr-xr-x 1 root root 30112 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 100952 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln + -rwxr-xr-x 1 root root 55572 Feb 8 2020 login + -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls + -rwxr-xr-x 1 root root 153124 Feb 8 2021 lsblk + -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 58920 Feb 8 2021 more + -rwsr-xr-x 1 root root 50720 Feb 8 2021 mount + -rwxr-xr-x 1 root root 13856 Feb 8 2021 mountpoint + -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 2021 rbash -> bash + -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm + -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 22 18:24 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 21 05:46 sh.distrib -> dash + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty + -rwsr-xr-x 1 root root 79396 Feb 8 2021 su + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync + -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar + -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch + -rwxr-xr-x 1 root root 34664 Sep 23 2020 true + -rwxr-xr-x 1 root root 17768 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Feb 8 2021 umount + -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 63024 Feb 8 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/54412/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -279,7 +313,7 @@ Get: 71 http://deb.debian.org/debian bullseye/main i386 libopenblas-pthread-dev i386 0.3.13+ds-3 [3162 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 libopenblas-dev i386 0.3.13+ds-3 [44.1 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 libsimde-dev all 0.7.2-4 [259 kB] -Fetched 44.3 MB in 18s (2496 kB/s) +Fetched 44.3 MB in 1s (46.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) @@ -593,8 +627,44 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (3673 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25315 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/scrappie-1.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/scrappie-1.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package scrappie dpkg-buildpackage: info: source version 1.4.2-7 dpkg-buildpackage: info: source distribution unstable @@ -761,7 +831,7 @@ dh_auto_build --builddirectory build_${SIMD} && \ cp build_${SIMD}/scrappie build_${SIMD}/scrappie-${SIMD} ; \ done - cd build_ssse3 && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_ssse3 && make -j18 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/scrappie-1.4.2/build_ssse3' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_ssse3/CMakeFiles /build/scrappie-1.4.2/build_ssse3//CMakeFiles/progress.marks @@ -770,13 +840,13 @@ make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/depend make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' -cd /build/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' cd /build/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_objects.dir/DependInfo.cmake --color= -Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/depend.internal". -Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/depend.internal". +make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' +cd /build/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_objects.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_objects.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_objects.dir/depend.internal". +Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/depend.internal". +Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/depend.internal". Scanning dependencies of target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/build @@ -787,30 +857,30 @@ make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' -[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o -[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c +[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o +[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o +[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-1.4.2/src/event_detection.c /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-1.4.2/src/layers.c -[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-1.4.2/src/nnfeatures.c -[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -[ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o +[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/scrappie-1.4.2/src/networks.c +[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-1.4.2/src/nnfeatures.c +[ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/scrappie_matrix.c +[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/scrappie-1.4.2/src/decode.c -[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c -[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-1.4.2/src/event_detection.c +[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o [ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c +[ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c -[ 28%] Linking C executable test_interface +/usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c +[ 31%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' -[ 31%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c [ 31%] Built target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' [ 31%] Built target scrappie_objects @@ -831,49 +901,47 @@ make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' [ 34%] Built target scrappie_static make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/depend -make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' cd /build/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie.dir/DependInfo.cmake --color= +make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' cd /build/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= -Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_unittest.dir/depend.internal". -Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_unittest.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie.dir/depend.internal". +Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_unittest.dir/depend.internal". +Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_unittest.dir/depend.internal". 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-Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/scrappie-1.4.2/src/scrappie_event_table.c +[ 86%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_matrix.c +[ 89%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. 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-I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/scrappie-1.4.2/src/test/test_util.c /build/scrappie-1.4.2/src/scrappie_event_table.c: In function 'main_event_table': /build/scrappie-1.4.2/src/scrappie_event_table.c:155:42: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 155 | fprintf(args.output, "%zu\t%zu\t%f\t%f\t%d\n", i, ev.start, ev.mean, ev.stdv, (int)ev.length); @@ -920,35 +990,35 @@ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu -[ 97%] Linking C executable scrappie_unittest -/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 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CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' +[ 97%] Built target scrappie +[100%] Linking C executable scrappie_unittest +/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o 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-I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/scrappie_matrix.c +[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c +[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c +[ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c +[ 31%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse3' -[ 31%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c [ 31%] Built target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse3' [ 31%] Built target scrappie_objects @@ -1015,30 +1085,24 @@ Scanning dependencies of target scrappie_unittest make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse3' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build -make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' Scanning dependencies of target scrappie +make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse3' make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' [ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -[ 39%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time 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/build/scrappie-1.4.2/src/test/test_scrappie_elu.c -[ 60%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/scrappie-1.4.2/src/scrappie_raw.c +[ 50%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o +[ 52%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-1.4.2/src/scrappie_events.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/i686-linux-gnu/10/include/stdint.h:9, @@ -1052,39 +1116,45 @@ /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat 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/build/scrappie-1.4.2/src/scrappie_event_table.c: In function 'main_event_table': /build/scrappie-1.4.2/src/scrappie_event_table.c:155:42: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 155 | fprintf(args.output, "%zu\t%zu\t%f\t%f\t%d\n", i, ev.start, ev.mean, ev.stdv, (int)ev.length); @@ -1092,31 +1162,31 @@ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu -[ 97%] Linking C executable scrappie_unittest -/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o 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Dependee "/build/scrappie-1.4.2/build_sse2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse2/CMakeFiles/scrappie_objects.dir/depend.internal". 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C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse2' -[ 31%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -/usr/bin/cc 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-fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_signal.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/scrappie-1.4.2/src/scrappie_raw.c +In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/math.h:27, + from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: +/usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + | ^~~~~~~ +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_squiggle.c +[ 78%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/scrappie-1.4.2/src/test/test_util.c +[ 81%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -c /build/scrappie-1.4.2/src/scrappie_seqmappy.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/i686-linux-gnu/10/include/stdint.h:9, @@ -1225,31 +1317,9 @@ /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ -In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/math.h:27, - from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: -/usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - | ^~~~~~~ -[ 63%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 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-fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/scrappie-1.4.2/src/test/test_util.c -[ 76%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-1.4.2/src/scrappie_events.c -[ 78%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -[ 81%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -c /build/scrappie-1.4.2/src/scrappie_seqmappy.c [ 84%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -[ 86%] Building C object CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/scrappie_squiggle.c +[ 86%] Building C object CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -c /build/scrappie-1.4.2/src/scrappie_subcommands.c [ 89%] Building C object CMakeFiles/scrappie.dir/src/scrappie_help.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_help.c.o -c /build/scrappie-1.4.2/src/scrappie_help.c @@ -1264,22 +1334,22 @@ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu -[ 97%] Linking C executable scrappie_unittest -/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o 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CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm -make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse2' -[100%] Built target scrappie_unittest +[100%] Linking C executable scrappie_unittest +/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse2' [100%] Built target scrappie +make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse2' +[100%] Built target scrappie_unittest make[3]: Leaving directory '/build/scrappie-1.4.2/build_sse2' /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_sse2/CMakeFiles 0 make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse2' dh_auto_build --builddirectory build_plain && \ cp build_plain/scrappie build_plain/scrappie-plain - cd build_plain && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_plain && make -j18 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/scrappie-1.4.2/build_plain' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_plain --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_plain/CMakeFiles /build/scrappie-1.4.2/build_plain//CMakeFiles/progress.marks @@ -1288,13 +1358,13 @@ make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/depend make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' -cd /build/scrappie-1.4.2/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain/CMakeFiles/test_interface.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' cd /build/scrappie-1.4.2/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_objects.dir/DependInfo.cmake --color= -Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_objects.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_objects.dir/depend.internal". -Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_objects.dir/depend.internal". +make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' +cd /build/scrappie-1.4.2/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain/CMakeFiles/test_interface.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/test_interface.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/test_interface.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/test_interface.dir/depend.internal". +Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_objects.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_objects.dir/depend.internal". +Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_objects.dir/depend.internal". Scanning dependencies of target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/build @@ -1305,30 +1375,30 @@ make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' -[ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-1.4.2/src/event_detection.c -[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o +[ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o +[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/scrappie-1.4.2/src/decode.c [ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-1.4.2/src/layers.c /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/scrappie-1.4.2/src/networks.c -[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o -[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 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-fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-1.4.2/src/nnfeatures.c -[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o -[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o +[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c +[ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/scrappie_matrix.c -[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-1.4.2/src/layers.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c -[ 28%] Linking C executable test_interface +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c +[ 31%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' -[ 31%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c [ 31%] Built target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' [ 31%] Built target scrappie_objects @@ -1354,44 +1424,54 @@ cd /build/scrappie-1.4.2/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' cd /build/scrappie-1.4.2/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= -Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/depend.internal". -Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_unittest.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_unittest.dir/depend.internal". +Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/depend.internal". +Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/depend.internal". Scanning dependencies of target scrappie_unittest make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build -Scanning dependencies of target scrappie make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' +Scanning dependencies of target scrappie make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' -[ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -[ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -[ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -[ 44%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include 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52%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o +[ 52%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_util.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-1.4.2/src/test/test_skeleton.c +[ 63%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o +[ 65%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o +[ 68%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_decoding.c +[ 71%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ -[ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o +[ 73%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_elu.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time 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CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_matrix.c +[ 76%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_signal.c +[ 78%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/i686-linux-gnu/10/include/stdint.h:9, @@ -1405,21 +1485,11 @@ /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ -[ 63%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_matrix.c -[ 65%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_signal.c -[ 68%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/scrappie-1.4.2/src/scrappie_raw.c -[ 71%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_squiggle.c -[ 73%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/scrappie-1.4.2/src/test/test_util.c -[ 76%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-1.4.2/src/scrappie_events.c -[ 78%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o +[ 81%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_squiggle.c /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c -[ 81%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/scrappie-1.4.2/src/test/test_util.c /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -c /build/scrappie-1.4.2/src/scrappie_seqmappy.c [ 84%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/scrappie_squiggle.c @@ -1438,12 +1508,12 @@ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu -[ 97%] Linking C executable scrappie_unittest -/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit -[100%] Linking C executable scrappie +[ 97%] Linking C executable scrappie /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm +[100%] Linking C executable scrappie_unittest +/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' [100%] Built target scrappie make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' @@ -1458,10 +1528,10 @@ for SIMD in ssse3 sse3 sse2 ; do \ dh_auto_test --builddirectory build_${SIMD} ; \ done - cd build_ssse3 && make -j10 test ARGS\+=-j10 + cd build_ssse3 && make -j18 test ARGS\+=-j18 make[2]: Entering directory '/build/scrappie-1.4.2/build_ssse3' Running tests... -/usr/bin/ctest --force-new-ctest-process -j10 +/usr/bin/ctest --force-new-ctest-process -j18 Test project /build/scrappie-1.4.2/build_ssse3 Start 1: unittest Start 2: test_events_call @@ -1473,44 +1543,44 @@ Start 8: test_event_table Start 9: test_mappy Start 10: test_seqmappy - 1/19 Test #8: test_event_table ................. Passed 0.72 sec Start 11: test_squiggle_r94 - 2/19 Test #11: test_squiggle_r94 ................ Passed 0.78 sec Start 12: test_squiggle_r10 - 3/19 Test #12: test_squiggle_r10 ................ Passed 0.65 sec Start 13: test_licence - 4/19 Test #13: test_licence ..................... Passed 0.09 sec Start 14: test_help - 5/19 Test #14: test_help ........................ Passed 0.08 sec Start 15: test_help_events - 6/19 Test #15: test_help_events ................. Passed 0.07 sec Start 16: test_help_event_table - 7/19 Test #16: test_help_event_table ............ Passed 0.08 sec Start 17: test_help_raw - 8/19 Test #17: test_help_raw .................... Passed 0.10 sec Start 18: test_help_squiggle - 9/19 Test #9: test_mappy ....................... Passed 3.90 sec + 1/19 Test #13: test_licence ..................... Passed 0.18 sec Start 19: test_version -10/19 Test #18: test_help_squiggle ............... Passed 1.69 sec -11/19 Test #19: test_version ..................... Passed 0.07 sec -12/19 Test #10: test_seqmappy .................... Passed 27.36 sec -13/19 Test #2: test_events_call ................. Passed 37.35 sec -14/19 Test #3: test_raw_call .................... Passed 41.70 sec -15/19 Test #5: test_rawrgrgr_r941_call .......... Passed 45.45 sec -16/19 Test #4: test_rawrgrgr_r94_call ........... Passed 48.13 sec -17/19 Test #1: unittest ......................... Passed 52.10 sec -18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 56.86 sec -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 83.27 sec + 2/19 Test #14: test_help ........................ Passed 0.17 sec + 3/19 Test #15: test_help_events ................. Passed 0.14 sec + 4/19 Test #16: test_help_event_table ............ Passed 0.10 sec + 5/19 Test #17: test_help_raw .................... Passed 0.17 sec + 6/19 Test #18: test_help_squiggle ............... Passed 0.15 sec + 7/19 Test #19: test_version ..................... Passed 0.11 sec + 8/19 Test #12: test_squiggle_r10 ................ Passed 0.45 sec + 9/19 Test #11: test_squiggle_r94 ................ Passed 0.66 sec +10/19 Test #9: test_mappy ....................... Passed 2.34 sec +11/19 Test #8: test_event_table ................. Passed 2.38 sec +12/19 Test #10: test_seqmappy .................... Passed 23.33 sec +13/19 Test #4: test_rawrgrgr_r94_call ........... Passed 61.72 sec +14/19 Test #6: test_rawrgrgr_r10_call ........... Passed 62.68 sec +15/19 Test #1: unittest ......................... Passed 67.09 sec +16/19 Test #2: test_events_call ................. Passed 70.14 sec +17/19 Test #3: test_raw_call .................... Passed 91.21 sec +18/19 Test #5: test_rawrgrgr_r941_call .......... Passed 92.95 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 123.89 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 83.30 sec +Total Test time (real) = 123.90 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' - rm -fr -- /tmp/dh-xdg-rundir-xrIptZMN - cd build_sse3 && make -j10 test ARGS\+=-j10 + rm -fr -- /tmp/dh-xdg-rundir-aFg3C4T2 + cd build_sse3 && make -j18 test ARGS\+=-j18 make[2]: Entering directory '/build/scrappie-1.4.2/build_sse3' Running tests... -/usr/bin/ctest --force-new-ctest-process -j10 +/usr/bin/ctest --force-new-ctest-process -j18 Test project /build/scrappie-1.4.2/build_sse3 Start 1: unittest Start 2: test_events_call @@ -1522,44 +1592,44 @@ Start 8: test_event_table Start 9: test_mappy Start 10: test_seqmappy - 1/19 Test #8: test_event_table ................. Passed 0.81 sec Start 11: test_squiggle_r94 - 2/19 Test #11: test_squiggle_r94 ................ Passed 1.03 sec Start 12: test_squiggle_r10 - 3/19 Test #12: test_squiggle_r10 ................ Passed 0.83 sec Start 13: test_licence - 4/19 Test #13: test_licence ..................... Passed 0.11 sec Start 14: test_help - 5/19 Test #9: test_mappy ....................... Passed 4.12 sec Start 15: test_help_events - 6/19 Test #14: test_help ........................ Passed 0.95 sec Start 16: test_help_event_table - 7/19 Test #15: test_help_events ................. Passed 0.09 sec Start 17: test_help_raw - 8/19 Test #16: test_help_event_table ............ Passed 0.10 sec Start 18: test_help_squiggle - 9/19 Test #17: test_help_raw .................... Passed 0.09 sec + 1/19 Test #13: test_licence ..................... Passed 0.18 sec Start 19: test_version -10/19 Test #18: test_help_squiggle ............... Passed 0.09 sec -11/19 Test #19: test_version ..................... Passed 0.10 sec -12/19 Test #10: test_seqmappy .................... Passed 26.25 sec -13/19 Test #2: test_events_call ................. Passed 38.94 sec -14/19 Test #3: test_raw_call .................... Passed 42.65 sec -15/19 Test #5: test_rawrgrgr_r941_call .......... Passed 43.40 sec -16/19 Test #4: test_rawrgrgr_r94_call ........... Passed 44.18 sec -17/19 Test #1: unittest ......................... Passed 51.29 sec -18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 54.70 sec -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 79.24 sec + 2/19 Test #14: test_help ........................ Passed 0.20 sec + 3/19 Test #15: test_help_events ................. Passed 0.16 sec + 4/19 Test #16: test_help_event_table ............ Passed 0.12 sec + 5/19 Test #17: test_help_raw .................... Passed 0.11 sec + 6/19 Test #18: test_help_squiggle ............... Passed 0.11 sec + 7/19 Test #19: test_version ..................... Passed 0.13 sec + 8/19 Test #11: test_squiggle_r94 ................ Passed 0.50 sec + 9/19 Test #12: test_squiggle_r10 ................ Passed 0.50 sec +10/19 Test #8: test_event_table ................. Passed 1.14 sec +11/19 Test #9: test_mappy ....................... Passed 1.84 sec +12/19 Test #10: test_seqmappy .................... Passed 25.17 sec +13/19 Test #3: test_raw_call .................... Passed 48.89 sec +14/19 Test #1: unittest ......................... Passed 59.36 sec +15/19 Test #5: test_rawrgrgr_r941_call .......... Passed 61.58 sec +16/19 Test #2: test_events_call ................. Passed 62.20 sec +17/19 Test #4: test_rawrgrgr_r94_call ........... Passed 65.35 sec +18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 67.16 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 104.64 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 79.31 sec +Total Test time (real) = 104.66 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse3' - rm -fr -- /tmp/dh-xdg-rundir-4rhcHFFW - cd build_sse2 && make -j10 test ARGS\+=-j10 + rm -fr -- /tmp/dh-xdg-rundir-xMY2Nvlr + cd build_sse2 && make -j18 test ARGS\+=-j18 make[2]: Entering directory '/build/scrappie-1.4.2/build_sse2' Running tests... -/usr/bin/ctest --force-new-ctest-process -j10 +/usr/bin/ctest --force-new-ctest-process -j18 Test project /build/scrappie-1.4.2/build_sse2 Start 1: unittest Start 2: test_events_call @@ -1571,45 +1641,45 @@ Start 8: test_event_table Start 9: test_mappy Start 10: test_seqmappy - 1/19 Test #8: test_event_table ................. Passed 0.92 sec Start 11: test_squiggle_r94 - 2/19 Test #11: test_squiggle_r94 ................ Passed 0.75 sec Start 12: test_squiggle_r10 - 3/19 Test #12: test_squiggle_r10 ................ Passed 0.74 sec Start 13: test_licence - 4/19 Test #13: test_licence ..................... Passed 0.09 sec Start 14: test_help - 5/19 Test #14: test_help ........................ Passed 0.09 sec Start 15: test_help_events - 6/19 Test #15: test_help_events ................. Passed 0.09 sec Start 16: test_help_event_table - 7/19 Test #16: test_help_event_table ............ Passed 0.09 sec Start 17: test_help_raw - 8/19 Test #9: test_mappy ....................... Passed 4.67 sec Start 18: test_help_squiggle - 9/19 Test #17: test_help_raw .................... Passed 2.51 sec + 1/19 Test #13: test_licence ..................... Passed 0.22 sec Start 19: test_version -10/19 Test #18: test_help_squiggle ............... Passed 0.09 sec -11/19 Test #19: test_version ..................... Passed 0.06 sec -12/19 Test #10: test_seqmappy .................... Passed 25.78 sec -13/19 Test #2: test_events_call ................. Passed 36.66 sec -14/19 Test #3: test_raw_call .................... Passed 38.25 sec -15/19 Test #4: test_rawrgrgr_r94_call ........... Passed 47.03 sec -16/19 Test #5: test_rawrgrgr_r941_call .......... Passed 47.10 sec -17/19 Test #1: unittest ......................... Passed 51.57 sec -18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 55.73 sec -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 79.91 sec + 2/19 Test #14: test_help ........................ Passed 0.22 sec + 3/19 Test #15: test_help_events ................. Passed 0.19 sec + 4/19 Test #16: test_help_event_table ............ Passed 0.18 sec + 5/19 Test #17: test_help_raw .................... Passed 0.18 sec + 6/19 Test #18: test_help_squiggle ............... Passed 0.15 sec + 7/19 Test #19: test_version ..................... Passed 0.16 sec + 8/19 Test #12: test_squiggle_r10 ................ Passed 0.43 sec + 9/19 Test #11: test_squiggle_r94 ................ Passed 0.51 sec +10/19 Test #8: test_event_table ................. Passed 1.00 sec +11/19 Test #9: test_mappy ....................... Passed 1.94 sec +12/19 Test #10: test_seqmappy .................... Passed 22.42 sec +13/19 Test #5: test_rawrgrgr_r941_call .......... Passed 38.00 sec +14/19 Test #3: test_raw_call .................... Passed 38.11 sec +15/19 Test #4: test_rawrgrgr_r94_call ........... Passed 38.36 sec +16/19 Test #2: test_events_call ................. Passed 42.34 sec +17/19 Test #1: unittest ......................... Passed 42.68 sec +18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 46.66 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 474.90 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 79.93 sec +Total Test time (real) = 474.91 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse2' - rm -fr -- /tmp/dh-xdg-rundir-p_VLEaNp + rm -fr -- /tmp/dh-xdg-rundir-cgCN6poR dh_auto_test --builddirectory build_plain - cd build_plain && make -j10 test ARGS\+=-j10 + cd build_plain && make -j18 test ARGS\+=-j18 make[2]: Entering directory '/build/scrappie-1.4.2/build_plain' Running tests... -/usr/bin/ctest --force-new-ctest-process -j10 +/usr/bin/ctest --force-new-ctest-process -j18 Test project /build/scrappie-1.4.2/build_plain Start 1: unittest Start 2: test_events_call @@ -1621,40 +1691,40 @@ Start 8: test_event_table Start 9: test_mappy Start 10: test_seqmappy - 1/19 Test #8: test_event_table ................. Passed 0.81 sec Start 11: test_squiggle_r94 - 2/19 Test #11: test_squiggle_r94 ................ Passed 1.03 sec Start 12: test_squiggle_r10 - 3/19 Test #9: test_mappy ....................... Passed 3.23 sec Start 13: test_licence - 4/19 Test #12: test_squiggle_r10 ................ Passed 2.58 sec Start 14: test_help - 5/19 Test #13: test_licence ..................... Passed 0.18 sec Start 15: test_help_events - 6/19 Test #14: test_help ........................ Passed 0.09 sec Start 16: test_help_event_table - 7/19 Test #15: test_help_events ................. Passed 0.09 sec Start 17: test_help_raw - 8/19 Test #16: test_help_event_table ............ Passed 0.07 sec Start 18: test_help_squiggle - 9/19 Test #17: test_help_raw .................... Passed 0.09 sec + 1/19 Test #13: test_licence ..................... Passed 0.18 sec Start 19: test_version -10/19 Test #18: test_help_squiggle ............... Passed 0.07 sec -11/19 Test #19: test_version ..................... Passed 0.07 sec -12/19 Test #10: test_seqmappy .................... Passed 62.79 sec -13/19 Test #1: unittest ......................... Passed 65.77 sec -14/19 Test #3: test_raw_call .................... Passed 122.43 sec -15/19 Test #5: test_rawrgrgr_r941_call .......... Passed 136.13 sec -16/19 Test #2: test_events_call ................. Passed 142.79 sec -17/19 Test #4: test_rawrgrgr_r94_call ........... Passed 147.31 sec -18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 180.06 sec -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 255.34 sec + 2/19 Test #14: test_help ........................ Passed 0.17 sec + 3/19 Test #15: test_help_events ................. Passed 0.14 sec + 4/19 Test #16: test_help_event_table ............ Passed 0.10 sec + 5/19 Test #17: test_help_raw .................... Passed 0.08 sec + 6/19 Test #18: test_help_squiggle ............... Passed 0.09 sec + 7/19 Test #19: test_version ..................... Passed 0.07 sec + 8/19 Test #11: test_squiggle_r94 ................ Passed 0.81 sec + 9/19 Test #12: test_squiggle_r10 ................ Passed 0.80 sec +10/19 Test #8: test_event_table ................. Passed 1.12 sec +11/19 Test #9: test_mappy ....................... Passed 2.03 sec +12/19 Test #10: test_seqmappy .................... Passed 32.26 sec +13/19 Test #1: unittest ......................... Passed 51.06 sec +14/19 Test #3: test_raw_call .................... Passed 54.77 sec +15/19 Test #4: test_rawrgrgr_r94_call ........... Passed 61.65 sec +16/19 Test #2: test_events_call ................. Passed 67.06 sec +17/19 Test #5: test_rawrgrgr_r941_call .......... Passed 68.15 sec +18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 88.56 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 101.43 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 255.46 sec +Total Test time (real) = 101.44 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_plain' - rm -fr -- /tmp/dh-xdg-rundir-L42RrSsw + rm -fr -- /tmp/dh-xdg-rundir-U8mDAlKS make[1]: Leaving directory '/build/scrappie-1.4.2' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake @@ -1671,7 +1741,7 @@ for SIMD in ssse3 sse3 sse2 ; do \ dh_auto_install --builddirectory build_${SIMD} ; \ done - cd build_ssse3 && make -j10 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_ssse3 && make -j18 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_ssse3' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1684,7 +1754,7 @@ -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' - cd build_sse3 && make -j10 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_sse3 && make -j18 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_sse3' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1697,7 +1767,7 @@ -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse3' - cd build_sse2 && make -j10 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_sse2 && make -j18 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_sse2' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1756,11 +1826,6 @@ dwz -mdebian/scrappie/usr/lib/debug/.dwz/i386-linux-gnu/scrappie.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/scrappie.debug -- debian/scrappie/usr/bin/scrappie-plain debian/scrappie/usr/bin/scrappie-sse2 debian/scrappie/usr/bin/scrappie-sse3 debian/scrappie/usr/bin/scrappie-ssse3 objcopy --compress-debug-sections debian/scrappie/usr/lib/debug/.dwz/i386-linux-gnu/scrappie.debug dh_strip -a -O--buildsystem=cmake - install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/35 - objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse2 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/35/d19f7734bc0b7a093584a1fc2cc930b9ebf586.debug - chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/35/d19f7734bc0b7a093584a1fc2cc930b9ebf586.debug - strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse2 - objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/35/d19f7734bc0b7a093584a1fc2cc930b9ebf586.debug debian/scrappie/usr/bin/scrappie-sse2 install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/24 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-plain debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/24/4906bfe2eeb77fbff1b7ff9f6b9131bd3673fc.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/24/4906bfe2eeb77fbff1b7ff9f6b9131bd3673fc.debug @@ -1771,6 +1836,11 @@ chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/2e/68d3234a6c37047d7ff631283cbe7729071875.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse3 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/2e/68d3234a6c37047d7ff631283cbe7729071875.debug debian/scrappie/usr/bin/scrappie-sse3 + install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/35 + objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse2 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/35/d19f7734bc0b7a093584a1fc2cc930b9ebf586.debug + chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/35/d19f7734bc0b7a093584a1fc2cc930b9ebf586.debug + strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse2 + objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/35/d19f7734bc0b7a093584a1fc2cc930b9ebf586.debug debian/scrappie/usr/bin/scrappie-sse2 install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/61 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-ssse3 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/61/c270a5af82cfdd8867038855d1cf31a91757b4.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/61/c270a5af82cfdd8867038855d1cf31a91757b4.debug @@ -1787,7 +1857,7 @@ rm -f debian/scrappie/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=cmake install -d debian/scrappie/DEBIAN - dpkg-shlibdeps -Tdebian/scrappie.substvars debian/scrappie/usr/bin/scrappie-sse2 debian/scrappie/usr/bin/scrappie-plain debian/scrappie/usr/bin/scrappie-sse3 debian/scrappie/usr/bin/scrappie-ssse3 + dpkg-shlibdeps -Tdebian/scrappie.substvars debian/scrappie/usr/bin/scrappie-plain debian/scrappie/usr/bin/scrappie-sse3 debian/scrappie/usr/bin/scrappie-sse2 debian/scrappie/usr/bin/scrappie-ssse3 dh_installdeb -O--buildsystem=cmake rm -f debian/scrappie.debhelper.log debian/rules override_dh_gencontrol @@ -1817,12 +1887,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/54412/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/54412/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/7601 and its subdirectories -I: Current time: Mon Jul 19 10:01:01 -12 2021 -I: pbuilder-time-stamp: 1626732061 +I: removing directory /srv/workspace/pbuilder/54412 and its subdirectories +I: Current time: Mon Aug 22 18:39:45 +14 2022 +I: pbuilder-time-stamp: 1661143185