Diff of the two buildlogs: -- --- b1/build.log 2021-07-27 05:26:46.128261933 +0000 +++ b2/build.log 2021-07-27 05:27:30.422606383 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jul 26 17:21:39 -12 2021 -I: pbuilder-time-stamp: 1627363299 +I: Current time: Tue Aug 30 01:49:47 +14 2022 +I: pbuilder-time-stamp: 1661773787 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./python-gffutils_0.10.1-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.a75eWlfi/trustedkeys.kbx': General error -gpgv: Signature made Mon Feb 17 21:43:51 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.2XkKWf1T/trustedkeys.kbx': General error +gpgv: Signature made Tue Feb 18 23:43:51 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -32,137 +32,171 @@ dpkg-source: info: applying 99ba2581a184a6660ee6d8d8b6a422cd298eeee4.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/453/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/18171/tmp/hooks/D01_modify_environment starting +debug: Running on ionos6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/18171/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/18171/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='9c7d50fb9007443f9cf135200307c84a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='453' - PS1='# ' - PS2='> ' + INVOCATION_ID=1e1f1f52d36a404abd0d2f7ba435a098 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=18171 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.a41qKIT9it/pbuilderrc_WuLN --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.a41qKIT9it/b1 --logfile b1/build.log python-gffutils_0.10.1-2.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.a41qKIT9it/pbuilderrc_kQ5Q --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.a41qKIT9it/b2 --logfile b2/build.log --extrapackages usrmerge python-gffutils_0.10.1-2.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos2-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-3 (2021-07-18) i686 GNU/Linux + Linux i-capture-the-hostname 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux I: ls -l /bin - total 5780 - -rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat - -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown - -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp - -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash - -rwxr-xr-x 1 root root 124904 Sep 22 2020 date - -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd - -rwxr-xr-x 1 root root 100752 Sep 22 2020 df - -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir - -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 34664 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln - -rwxr-xr-x 1 root root 55572 Feb 7 2020 login - -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls - -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more - -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash - -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm - -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 25 21:26 sh -> dash - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty - -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync - -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch - -rwxr-xr-x 1 root root 34664 Sep 22 2020 true - -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/453/tmp/hooks/D02_print_environment finished + total 5776 + -rwxr-xr-x 1 root root 1367848 Jun 22 2021 bash + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat + -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown + -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp + -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash + -rwxr-xr-x 1 root root 124904 Sep 23 2020 date + -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd + -rwxr-xr-x 1 root root 100752 Sep 23 2020 df + -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir + -rwxr-xr-x 1 root root 83644 Feb 8 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 34664 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 71928 Feb 8 2021 findmnt + -rwsr-xr-x 1 root root 30112 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 100952 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln + -rwxr-xr-x 1 root root 55572 Feb 8 2020 login + -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls + -rwxr-xr-x 1 root root 153124 Feb 8 2021 lsblk + -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 58920 Feb 8 2021 more + -rwsr-xr-x 1 root root 50720 Feb 8 2021 mount + -rwxr-xr-x 1 root root 13856 Feb 8 2021 mountpoint + -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 2021 rbash -> bash + -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm + -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 30 01:49 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 28 05:48 sh.distrib -> dash + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty + -rwsr-xr-x 1 root root 79396 Feb 8 2021 su + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync + -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar + -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch + -rwxr-xr-x 1 root root 34664 Sep 23 2020 true + -rwxr-xr-x 1 root root 17768 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Feb 8 2021 umount + -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 63024 Feb 8 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/18171/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -320,7 +354,7 @@ Get: 94 http://deb.debian.org/debian bullseye/main i386 python3-pyfaidx all 0.5.9.2-1 [26.4 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 python3-setuptools all 52.0.0-4 [366 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 python3-simplejson i386 3.17.2-1 [62.8 kB] -Fetched 52.8 MB in 12s (4590 kB/s) +Fetched 52.8 MB in 1s (66.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) @@ -727,9 +761,41 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (4268 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24951 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/python-gffutils-0.10.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/python-gffutils-0.10.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package python-gffutils dpkg-buildpackage: info: source version 0.10.1-2 dpkg-buildpackage: info: source distribution unstable @@ -760,117 +826,117 @@ running build running build_py creating /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils -copying gffutils/exceptions.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils -copying gffutils/gffwriter.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils -copying gffutils/helpers.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils -copying gffutils/create.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils -copying gffutils/pybedtools_integration.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils -copying gffutils/attributes.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils copying gffutils/iterators.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils +copying gffutils/gffwriter.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils copying gffutils/convert.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils -copying gffutils/interface.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils +copying gffutils/exceptions.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils copying gffutils/bins.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils -copying gffutils/version.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils copying gffutils/merge_criteria.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils -copying gffutils/__init__.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils -copying gffutils/biopython_integration.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils +copying gffutils/helpers.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils copying gffutils/inspect.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils -copying gffutils/constants.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils -copying gffutils/parser.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils +copying gffutils/create.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils +copying gffutils/pybedtools_integration.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils copying gffutils/feature.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils +copying gffutils/parser.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils +copying gffutils/biopython_integration.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils +copying gffutils/version.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils +copying gffutils/constants.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils +copying gffutils/attributes.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils +copying gffutils/__init__.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils +copying gffutils/interface.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils package init file 'gffutils/scripts/__init__.py' not found (or not a regular file) creating /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/scripts copying gffutils/scripts/gffutils-flybase-convert.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/scripts creating /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test -copying gffutils/test/helpers_test.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test -copying gffutils/test/synth_test_base.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test -copying gffutils/test/expected.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test copying gffutils/test/feature_test.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test copying gffutils/test/attr_test_cases.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test -copying gffutils/test/performance_test.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test -copying gffutils/test/test_merge.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test +copying gffutils/test/synth_test_base.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test copying gffutils/test/test.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test +copying gffutils/test/performance_test.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test copying gffutils/test/parser_test.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test -copying gffutils/test/test_biopython_integration.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test +copying gffutils/test/test_merge.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test +copying gffutils/test/expected.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test +copying gffutils/test/helpers_test.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test copying gffutils/test/__init__.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test copying gffutils/test/test_merge_all.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test +copying gffutils/test/test_biopython_integration.py -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test package init file 'gffutils/test/data/__init__.py' not found (or not a regular file) creating /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/random-chr.gff -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/gff_example1.gff3.gz -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/ncbi_gff3.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/ensembl_gtf.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/wormbase_gff2_alt.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/download-large-annotation-files.sh -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/unsanitized.gff -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/jgi_gff2.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data copying gffutils/test/data/synthetic.gff3 -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/wormbase_gff2_alt.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/gff_example1.gff3.gz -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data copying gffutils/test/data/keyval_sep_in_attrs.gff -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/intro_docs_example.gff -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/download-large-annotation-files.sh -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/random-chr.gff -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/FBgn0031208.gff -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data copying gffutils/test/data/F3-unique-3.v2.gff -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/nonascii -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/dm6-chr2L.fa -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gtf -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/hybrid1.gff3 -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/FBgn0031208.gff -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/gencode-v19.gtf -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/dm6-chr2L.fa -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data copying gffutils/test/data/mouse_extra_comma.gff3 -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/gff_example1.gff3 -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/ncbi_gff3.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/nonascii -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/intro_docs_example.gff -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/gencode-v19.gtf -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/hybrid1.gff3 -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/unsanitized.gff -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data copying gffutils/test/data/keep-order-test.gtf -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/jgi_gff2.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/wormbase_gff2.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/ensembl_gtf.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data copying gffutils/test/data/glimmer_nokeyval.gff3 -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/wormbase_gff2.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data -copying gffutils/test/data/gff_example1.gff3 -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data +copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data running build_scripts creating build creating build/scripts-3.9 copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.9 changing mode of build/scripts-3.9/gffutils-cli from 644 to 755 -PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ +PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.10.1 --no-info \ --name="Command line interface for python-gffutils." \ gffutils-cli > debian/gffutils-cli.1 -PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ +PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_fetch \- Fetch IDs") \ 'gffutils-cli fetch' > debian/gffutils-cli-fetch.1 -PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ +PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_children \- Fetch children from the database according to ID") \ 'gffutils-cli children' > debian/gffutils-cli-children.1 -PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ +PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_parents \- Fetch parents from the database according to ID") \ 'gffutils-cli parents' > debian/gffutils-cli-parents.1 -PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ +PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_region \- Returns features within provided genomic coordinates") \ 'gffutils-cli region' > debian/gffutils-cli-region.1 -PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ +PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_create \- Create a database") \ 'gffutils-cli create' > debian/gffutils-cli-create.1 -PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ +PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_common \- Identify child features in common") \ 'gffutils-cli common' > debian/gffutils-cli-common.1 -PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ +PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_clean \- Perform various QC operations to clean a GFF or GTF file") \ 'gffutils-cli clean' > debian/gffutils-cli-clean.1 -PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ +PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_sanitize \- Sanitize a GFF file") \ 'gffutils-cli sanitize' > debian/gffutils-cli-sanitize.1 -PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ +PYTHONPATH=/build/python-gffutils-0.10.1 PATH=/build/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_rmdups \- Remove duplicates from a GFF file") \ 'gffutils-cli rmdups' > debian/gffutils-cli-rmdups.1 @@ -977,15 +1043,15 @@ gffutils.test.test.test_nonascii ... ok gffutils.test.test.test_feature_merge ... ok gffutils.test.test.test_add_relation ... ok -Test creation of FeatureDB from URL iterator. ... 127.0.0.1 - - [26/Jul/2021 17:26:00] "GET /gff_example1.gff3 HTTP/1.1" 200 - -127.0.0.1 - - [26/Jul/2021 17:26:00] "GET /gff_example1.gff3.gz HTTP/1.1" 200 - +Test creation of FeatureDB from URL iterator. ... 127.0.0.1 - - [30/Aug/2022 01:50:19] "GET /gff_example1.gff3 HTTP/1.1" 200 - +127.0.0.1 - - [30/Aug/2022 01:50:19] "GET /gff_example1.gff3.gz HTTP/1.1" 200 - ok gffutils.test.test.test_empty_files ... ok gffutils.test.test.test_false_function ... ok gffutils.test.test.test_inspect ... ok gffutils.test.test.test_delete ... ok gffutils.test.test.test_iterator_update ... ok -gffutils.test.test.test_tempfiles ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 1 of 8 (12%) 3 of 8 (37%) 2 of 8 (25%) 4 of 8 (50%) 5 of 8 (62%) 3 of 8 (37%) 6 of 8 (75%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 0 of 8 (0%) 2 of 8 (25%) 1 of 8 (12%) 3 of 8 (37%) 2 of 8 (25%) 4 of 8 (50%) 3 of 8 (37%) 5 of 8 (62%) 4 of 8 (50%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 0 of 8 (0%) 2 of 8 (25%) 3 of 8 (37%) 1 of 8 (12%) 4 of 8 (50%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 0 of 8 (0%) 3 of 8 (37%) 4 of 8 (50%) 1 of 8 (12%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 0 of 8 (0%) 2 of 8 (25%) 3 of 8 (37%) 1 of 8 (12%) 4 of 8 (50%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 0 of 8 (0%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 3 of 8 (37%) 4 of 8 (50%) 4 of 8 (50%) 5 of 8 (62%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 0 of 8 (0%) 3 of 8 (37%) 1 of 8 (12%) 4 of 8 (50%) 2 of 8 (25%) 5 of 8 (62%) 3 of 8 (37%) 6 of 8 (75%) 0 of 8 (0%) 4 of 8 (50%) 5 of 8 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2 of 8 (25%) 5 of 8 (62%) 3 of 8 (37%) 3 of 8 (37%) 6 of 8 (75%) 4 of 8 (50%) 4 of 8 (50%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 3 of 8 (37%) 3 of 8 (37%) 4 of 8 (50%) 4 of 8 (50%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 0 of 8 (0%) 3 of 8 (37%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 1 of 8 (12%) 4 of 8 (50%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 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8 (62%) 5 of 8 (62%) 4 of 8 (50%) 4 of 8 (50%) 6 of 8 (75%) 6 of 8 (75%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 0 of 8 (0%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 4 of 8 (50%) 5 of 8 (62%) 1 of 8 (12%) 6 of 8 (75%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 1 of 8 (12%) 4 of 8 (50%) 2 of 8 (25%) 0 of 8 (0%) 5 of 8 (62%) 3 of 8 (37%) 0 of 8 (0%) 6 of 8 (75%) 4 of 8 (50%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 5 of 8 (62%) 2 of 8 (25%) 3 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2 of 8 (25%) 4 of 8 (50%) 3 of 8 (37%) 5 of 8 (62%) 4 of 8 (50%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 3 of 8 (37%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 4 of 8 (50%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 5 of 8 (62%) 4 of 8 (50%) 6 of 8 (75%) 6 of 8 (75%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 2 of 8 (25%) 3 of 8 (37%) 3 of 8 (37%) 3 of 8 (37%) 4 of 8 (50%) 4 of 8 (50%) 4 of 8 (50%) 5 of 8 (62%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 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(62%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 0 of 8 (0%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 1 of 8 (12%) 0 of 8 (0%) 5 of 8 (62%) 0 of 8 (0%) 2 of 8 (25%) 6 of 8 (75%) 0 of 8 (0%) 3 of 8 (37%) 1 of 8 (12%) 1 of 8 (12%) 0 of 8 (0%) 4 of 8 (50%) 2 of 8 (25%) 1 of 8 (12%) 2 of 8 (25%) 5 of 8 (62%) 3 of 8 (37%) 2 of 8 (25%) 1 of 8 (12%) 3 of 8 (37%) 6 of 8 (75%) 4 of 8 (50%) 3 of 8 (37%) 2 of 8 (25%) 4 of 8 (50%) 5 of 8 (62%) 4 of 8 (50%) 0 of 8 (0%) 3 of 8 (37%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 4 of 8 (50%) 6 of 8 (75%) 6 of 8 (75%) 5 of 8 (62%) 1 of 8 (12%) 0 of 8 (0%) 6 of 8 (75%) 2 of 8 (25%) 1 of 8 (12%) 3 of 8 (37%) 2 of 8 (25%) 4 of 8 (50%) 3 of 8 (37%) 5 of 8 (62%) 4 of 8 (50%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 0 of 8 (0%) 3 of 8 (37%) 4 of 8 (50%) 1 of 8 (12%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 0 of 8 (0%) 3 of 8 (37%) 4 of 8 (50%) 1 of 8 (12%) 0 of 8 (0%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 1 of 8 (12%) 3 of 8 (37%) 4 of 8 (50%) 2 of 8 (25%) 5 of 8 (62%) 3 of 8 (37%) 0 of 8 (0%) 6 of 8 (75%) 4 of 8 (50%) 1 of 8 (12%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 0 of 8 (0%) 4 of 8 (50%) 5 of 8 (62%) 1 of 8 (12%) 6 of 8 (75%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 1 of 8 (12%) 0 of 8 (0%) 2 of 8 (25%) 3 of 8 (37%) 3 of 8 (37%) 1 of 8 (12%) 4 of 8 (50%) 5 of 8 (62%) 4 of 8 (50%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 5 of 8 (62%) 0 of 8 (0%) 0 of 8 (0%) 4 of 8 (50%) 6 of 8 (75%) 0 of 8 (0%) 5 of 8 (62%) 1 of 8 (12%) 0 of 8 (0%) 1 of 8 (12%) 6 of 8 (75%) 2 of 8 (25%) 2 of 8 (25%) 1 of 8 (12%) 1 of 8 (12%) 3 of 8 (37%) 3 of 8 (37%) 2 of 8 (25%) 2 of 8 (25%) 4 of 8 (50%) 4 of 8 (50%) 3 of 8 (37%) 5 of 8 (62%) 3 of 8 (37%) 5 of 8 (62%) 4 of 8 (50%) 6 of 8 (75%) 4 of 8 (50%) 6 of 8 (75%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 3 of 8 (37%) 2 of 8 (25%) 4 of 8 (50%) 4 of 8 (50%) 3 of 8 (37%) 5 of 8 (62%) 5 of 8 (62%) 4 of 8 (50%) 6 of 8 (75%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 0 of 8 (0%) 3 of 8 (37%) 4 of 8 (50%) 1 of 8 (12%) 5 of 8 (62%) 2 of 8 (25%) 0 of 8 (0%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 1 of 8 (12%) 5 of 8 (62%) 2 of 8 (25%) 0 of 8 (0%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 1 of 8 (12%) 0 of 8 (0%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 1 of 8 (12%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 0 of 8 (0%) 4 of 8 (50%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 5 of 8 (62%) 6 of 8 (75%) 2 of 8 (25%) 2 of 8 (25%) 1 of 8 (12%) 0 of 8 (0%) 3 of 8 (37%) 3 of 8 (37%) 2 of 8 (25%) 4 of 8 (50%) 4 of 8 (50%) 1 of 8 (12%) 3 of 8 (37%) 5 of 8 (62%) 2 of 8 (25%) 5 of 8 (62%) 4 of 8 (50%) 3 of 8 (37%) 6 of 8 (75%) 6 of 8 (75%) 5 of 8 (62%) 4 of 8 (50%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 0 of 8 (0%) 2 of 8 (25%) 2 of 8 (25%) 1 of 8 (12%) 3 of 8 (37%) 3 of 8 (37%) 1 of 8 (12%) 2 of 8 (25%) 4 of 8 (50%) 2 of 8 (25%) 4 of 8 (50%) 5 of 8 (62%) 3 of 8 (37%) 3 of 8 (37%) 5 of 8 (62%) 6 of 8 (75%) 4 of 8 (50%) 4 of 8 (50%) 6 of 8 (75%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 0 of 8 (0%) 2 of 8 (25%) 3 of 8 (37%) 1 of 8 (12%) 4 of 8 (50%) 2 of 8 (25%) 5 of 8 (62%) 6 of 8 (75%) 3 of 8 (37%) 0 of 8 (0%) 4 of 8 (50%) 5 of 8 (62%) 1 of 8 (12%) 6 of 8 (75%) 2 of 8 (25%) 0 of 8 (0%) 3 of 8 (37%) 4 of 8 (50%) 1 of 8 (12%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 0 of 8 (0%) 0 of 8 (0%) 3 of 8 (37%) 3 of 8 (37%) 1 of 8 (12%) 1 of 8 (12%) 4 of 8 (50%) 4 of 8 (50%) 0 of 8 (0%) 2 of 8 (25%) 5 of 8 (62%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 6 of 8 (75%) 3 of 8 (37%) 3 of 8 (37%) 1 of 8 (12%) 4 of 8 (50%) 4 of 8 (50%) 2 of 8 (25%) 5 of 8 (62%) 0 of 8 (0%) 5 of 8 (62%) 3 of 8 (37%) 6 of 8 (75%) 6 of 8 (75%) 4 of 8 (50%) 1 of 8 (12%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 0 of 8 (0%) 3 of 8 (37%) 3 of 8 (37%) 4 of 8 (50%) 4 of 8 (50%) 1 of 8 (12%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 2 of 8 (25%) 3 of 8 (37%) 6 of 8 (75%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 0 of 8 (0%) 2 of 8 (25%) 3 of 8 (37%) 1 of 8 (12%) 4 of 8 (50%) 2 of 8 (25%) 5 of 8 (62%) 3 of 8 (37%) 6 of 8 (75%) 0 of 8 (0%) 4 of 8 (50%) 5 of 8 (62%) 1 of 8 (12%) 6 of 8 (75%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 1 of 8 (12%) 3 of 8 (37%) 2 of 8 (25%) 4 of 8 (50%) 2 of 8 (25%) 0 of 8 (0%) 5 of 8 (62%) 3 of 8 (37%) 3 of 8 (37%) 6 of 8 (75%) 4 of 8 (50%) 1 of 8 (12%) 4 of 8 (50%) 2 of 8 (25%) 5 of 8 (62%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 6 of 8 (75%) 3 of 8 (37%) 1 of 8 (12%) 4 of 8 (50%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 3 of 8 (37%) 3 of 8 (37%) 4 of 8 (50%) 4 of 8 (50%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 4 of 8 (50%) 5 of 8 (62%) 1 of 8 (12%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 4 of 8 (50%) 5 of 8 (62%) 1 of 8 (12%) 6 of 8 (75%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok tests the new semantics for disabling gene/transcript inference ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/create.py:733: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation warnings.warn( 0 of 4 (0%) 1 of 4 (25%) 2 of 4 (50%) /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/create.py:724: UserWarning: It appears you have a transcript feature in your GTF file. You may want to use the `disable_infer_transcripts=True` option to speed up database creation @@ -1028,7 +1094,7 @@ test_one (gffutils.test.test_merge_all.TestMerge_all) ... ok ---------------------------------------------------------------------- -Ran 113 tests in 4.509s +Ran 113 tests in 1.724s OK I: pybuild pybuild:310: find . -name tmp.db -delete @@ -1051,137 +1117,137 @@ creating /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9 creating /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages creating /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +creating /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/scripts +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/scripts/gffutils-flybase-convert.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/scripts +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/iterators.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/gffwriter.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/convert.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/exceptions.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/bins.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/merge_criteria.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/helpers.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/inspect.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/create.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +creating /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/pybedtools_integration.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/constants.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/interface.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/merge_criteria.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/bins.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/attributes.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/__init__.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/helpers.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/parser.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/feature.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/iterators.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/inspect.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/version.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/gffwriter.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/convert.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/create.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/exceptions.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/biopython_integration.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/pybedtools_integration.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/feature.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils creating /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/helpers_test.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/synth_test_base.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/expected.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/feature_test.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test creating /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/random-chr.gff -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/gff_example1.gff3.gz -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/ncbi_gff3.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/ensembl_gtf.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/wormbase_gff2_alt.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/download-large-annotation-files.sh -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/unsanitized.gff -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/jgi_gff2.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/synthetic.gff3 -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/wormbase_gff2_alt.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/gff_example1.gff3.gz -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/keyval_sep_in_attrs.gff -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/intro_docs_example.gff -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/download-large-annotation-files.sh -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/random-chr.gff -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/FBgn0031208.gff -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/F3-unique-3.v2.gff -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/nonascii -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/dm6-chr2L.fa -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/FBgn0031208.gtf -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/hybrid1.gff3 -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/FBgn0031208.gff -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/gencode-v19.gtf -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/dm6-chr2L.fa -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/dm6-chr2L.fa.fai -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/mouse_extra_comma.gff3 -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/gff_example1.gff3 -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/ncbi_gff3.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/nonascii -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/intro_docs_example.gff -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/gencode-v19.gtf -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/hybrid1.gff3 -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/unsanitized.gff -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/keep-order-test.gtf -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/jgi_gff2.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/wormbase_gff2.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/ensembl_gtf.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/glimmer_nokeyval.gff3 -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/wormbase_gff2.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/gff_example1.gff3 -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/dm6-chr2L.fa.fai -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/feature_test.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/attr_test_cases.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/data creating /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/test_merge_all.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/expected.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/test.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/synth_test_base.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/test_biopython_integration.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/__init__.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/attr_test_cases.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/synth_test_base.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/helpers_test.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/parser_test.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/test_merge.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/feature_test.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/performance_test.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/expected.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/test_merge_all.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/test_biopython_integration.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/performance_test.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/test_merge.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/parser_test.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__pycache__/test_merge.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__pycache__ +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/attr_test_cases.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/synth_test_base.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/test.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/performance_test.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/parser_test.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/test_biopython_integration.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/test_merge.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/expected.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/helpers_test.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/__init__.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/test_merge_all.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/gffwriter.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils -creating /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/scripts -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/scripts/gffutils-flybase-convert.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/scripts -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/helpers.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/create.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/pybedtools_integration.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils -creating /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/feature.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/interface.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/constants.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/convert.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/gffwriter.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/bins.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/__init__.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/create.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/pybedtools_integration.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/inspect.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/merge_criteria.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/parser.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/helpers.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/iterators.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/biopython_integration.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/exceptions.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/version.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__pycache__/attributes.cpython-39.pyc -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__pycache__ -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/attributes.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/iterators.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/convert.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/interface.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/bins.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/version.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/merge_criteria.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__init__.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/test/test_biopython_integration.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/parser.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/biopython_integration.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/inspect.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/version.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/constants.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/parser.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils -copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/feature.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/attributes.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/__init__.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +copying /build/python-gffutils-0.10.1/.pybuild/cpython3_3.9_gffutils/build/gffutils/interface.py -> /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/scripts/gffutils-flybase-convert.py to gffutils-flybase-convert.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/iterators.py to iterators.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/gffwriter.py to gffwriter.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/convert.py to convert.cpython-39.pyc byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/exceptions.py to exceptions.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/helpers_test.py to helpers_test.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/synth_test_base.py to synth_test_base.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/expected.py to expected.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/bins.py to bins.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/merge_criteria.py to merge_criteria.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/helpers.py to helpers.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/inspect.py to inspect.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/create.py to create.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/pybedtools_integration.py to pybedtools_integration.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/feature.py to feature.cpython-39.pyc byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/feature_test.py to feature_test.cpython-39.pyc byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/attr_test_cases.py to attr_test_cases.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/performance_test.py to performance_test.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/test_merge.py to test_merge.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/synth_test_base.py to synth_test_base.cpython-39.pyc byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/test.py to test.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/performance_test.py to performance_test.cpython-39.pyc byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/parser_test.py to parser_test.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/test_biopython_integration.py to test_biopython_integration.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/test_merge.py to test_merge.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/expected.py to expected.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/helpers_test.py to helpers_test.cpython-39.pyc byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/test_merge_all.py to test_merge_all.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/gffwriter.py to gffwriter.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/scripts/gffutils-flybase-convert.py to gffutils-flybase-convert.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/helpers.py to helpers.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/create.py to create.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/pybedtools_integration.py to pybedtools_integration.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/attributes.py to attributes.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/iterators.py to iterators.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/convert.py to convert.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/interface.py to interface.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/bins.py to bins.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/version.py to version.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/merge_criteria.py to merge_criteria.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/test/test_biopython_integration.py to test_biopython_integration.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/parser.py to parser.cpython-39.pyc byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/biopython_integration.py to biopython_integration.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/inspect.py to inspect.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/version.py to version.cpython-39.pyc byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/constants.py to constants.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/parser.py to parser.cpython-39.pyc -byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/feature.py to feature.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/attributes.py to attributes.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.9/dist-packages/gffutils/interface.py to interface.cpython-39.pyc running install_egg_info running egg_info writing gffutils.egg-info/PKG-INFO @@ -1228,12 +1294,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/18171/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/18171/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/453 and its subdirectories -I: Current time: Mon Jul 26 17:26:45 -12 2021 -I: pbuilder-time-stamp: 1627363605 +I: removing directory /srv/workspace/pbuilder/18171 and its subdirectories +I: Current time: Tue Aug 30 01:50:29 +14 2022 +I: pbuilder-time-stamp: 1661773829